BAC Information

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BAC

Clone NameB6Ng01-227K09
Chromosome15 (Build37)3 (Build37)
Map Location 99,610,602 - 99,611,75732,026,252 - 32,026,390
singlet/doubletsingletsinglet
Overlap geneLima1
Upstream geneWnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5
Downstream geneLOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K09.bB6Ng01-227K09.g
ACCGA041265GA041266
length1,159235
definitionB6Ng01-227K09.b B6Ng01-227K09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,610,602 - 99,611,757)(32,026,252 - 32,026,390)
sequence
gaattcatttccaaagttgctcccacatgaatgacccttggcgccaagct
gcctgtttctgcgcaccacttgataaagggcagtgagttgctaaccaaaa
tctaaggccagaaccatggcggccggtcattcttcatcctcgtcctcatc
atagtaccggtttctctttatctgttcctccacagacagctctcggacca
cttctccctcccagaacccgacatcttgggatttttgattctgggtagtg
aattctttagcagccgtggtgtctacaaagccagaccaacccggagcctc
gggttctaacggggactgctgtgcgtggacatggttgtcatcttcagcta
tgtttgctccattttccataaaattctcactctccagctcaaaagaacta
cggtccttgctcctcggcacttcctcgccctgccagcgtgattttcccac
attctctttctccccagagggtctggcattttccgtttgtttcctttcca
tcgtcgctatccctcctccaaactcctcactctgctcggactcgctccaa
cctttcctgagagatggcgaagaggccttggggctcttgatggaagaggt
tcgaaaggaagctgctaccgtaaacgggcggctcctctccttcagggacg
aagaccgccgcagcttcttcaggtccagatctacatcctccggggcctcc
gtcttgcagacgtcatcctccggaggccacttgggcttcgatactttgat
cccttcctccagggcacttccggaaccgcccagctcggctggcggaggcc
aggcgatcctcagcttcttggtctccgcaggcttatcctccctctccctc
tgagaagaggccttggcttccatacttgccgccagcacgccgaccttggc
gatgggggcatcttctacacccgggctatgggggctctcccctgcattag
gcggctgggctggtctccccaaagtctcctcattgtcgctcttgcttgcc
cacagatccttatgctgcttgtgcccaaagccctcgtcaatagttgcctt
tggacttgagagttgattgaagtgaagccttacagtaaattcgtccatgt
aaggatgcatatgttcctagaactgtcacaaaagagaaaaacacctaagt
cagcgaatc
agtcatcctggtctagaatgagactctgtctaaaacaaaacaatccgtca
tacttaaaactgataatacatttctctgaaagtttctttttctcctatga
ctttcagaagtctatattctcataatttgctttttatctttttggccatt
tgctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgcgagtgagtgcgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99610602_99611757
seq2: B6Ng01-227K09.b_46_1204

seq1  GAATTCATTTCCAAAGTTGCTCCCACATGAATGACCCTTGGCGCCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCAAAGTTGCTCCCACATGAATGACCCTTGGCGCCAAGCT  50

seq1  GCCTGTTTCTGCGCACCACTTGATAAAGGGCAGTGAGTTGCTAACCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTCTGCGCACCACTTGATAAAGGGCAGTGAGTTGCTAACCAAAA  100

seq1  TCTAAGGCCAGAACCATGGCGGCCGGTCATTCTTCATCCTCGTCCTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGCCAGAACCATGGCGGCCGGTCATTCTTCATCCTCGTCCTCATC  150

seq1  ATAGTACCGGTTTCTCTTTATCTGTTCCTCCACAGACAGCTCTCGGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACCGGTTTCTCTTTATCTGTTCCTCCACAGACAGCTCTCGGACCA  200

seq1  CTTCTCCCTCCCAGAACCCGACATCTTGGGATTTTTGATTCTGGGTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTCCCAGAACCCGACATCTTGGGATTTTTGATTCTGGGTAGTG  250

seq1  AATTCTTTAGCAGCCGTGGTGTCTACAAAGCCAGACCAACCCGGAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTAGCAGCCGTGGTGTCTACAAAGCCAGACCAACCCGGAGCCTC  300

seq1  GGGTTCTAACGGGGACTGCTGTGCGTGGACATGGTTGTCATCTTCAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTAACGGGGACTGCTGTGCGTGGACATGGTTGTCATCTTCAGCTA  350

seq1  TGTTTGCTCCATTTTCCATAAAATTCTCACTCTCCAGCTCAAAAGAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTCCATTTTCCATAAAATTCTCACTCTCCAGCTCAAAAGAACTA  400

seq1  CGGTCCTTGCTCCTCGGCACTTCCTCGCCCTGCCAGCGTGATTTTCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCTTGCTCCTCGGCACTTCCTCGCCCTGCCAGCGTGATTTTCCCAC  450

seq1  ATTCTCTTTCTCCCCAGAGGGTCTGGCATTTTCCGTTTGTTTCCTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTCTCCCCAGAGGGTCTGGCATTTTCCGTTTGTTTCCTTTCCA  500

seq1  TCGTCGCTATCCCTCCTCCAAACTCCTCACTCTGCTCGGACTCGCTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCGCTATCCCTCCTCCAAACTCCTCACTCTGCTCGGACTCGCTCCAA  550

seq1  CCTTTCCTGAGAGATGGCGAAGAGGCCTTGGGGCTCTTGATGGAAGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTGAGAGATGGCGAAGAGGCCTTGGGGCTCTTGATGGAAGAGGT  600

seq1  TCGAAAGGAAGCTGCTACCGTAAACGGGCGGCTCCTCTCCTTCAGGGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGGAAGCTGCTACCGTAAACGGGCGGCTCCTCTCCTTCAGGGACG  650

seq1  AAGACCGCCGCAGCTTCTTCAGGTCCAGATCTACATCCTCCGGGGCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCGCCGCAGCTTCTTCAGGTCCAGATCTACATCCTCCGGGGCCTCC  700

seq1  GTCTTGCAGACGTCATCCTCCGGAGGCCACTTGGGCTTCGATACTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAGACGTCATCCTCCGGAGGCCACTTGGGCTTCGATACTTTGAT  750

seq1  CCCTTCCTCCAGGGCACTTCCGGAACCGCCCAGCTCGGCTGGCGGAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCCAGGGCACTTCCGGAACCGCCCAGCTCGGCTGGCGGAGGCC  800

seq1  AGGCGATCCTCAGCTTCTTGGTCTCCGCAGGCTTATCCTCCCTCTCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGATCCTCAGCTTCTTGGTCTCCGCAGGCTTATCCTCCCTCTCCCTC  850

seq1  TGAGAAGAGGCCTTGGCTTCCATACTTGCCGCCAGCACGCCGACCTTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAGGCCTTGGCTTCCATACTTGCCGCCAGCACGCCGACCTTGGC  900

seq1  GATGGGGGCATCTTCTACACCCGGGCTATGGGGGCTCTCCCCTGCATTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGCATCTTCTACACCCGGGCTATGGGGGCTCTCCCCTGCATTAG  950

seq1  GCGGCTGGGCTGGTCTCCCCAAAGTCTCCTCATTGTCGCTCTTGCTTGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTGGGCTGGTCTCCCCAAAGTCTCCTCATTGTCGCTCTTGCTTGCC  1000

seq1  CACAGATCCTTATGCTGCTTGTGCCCAAAGCCCTCGTC-ATAGTTGCCTT  1049
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACAGATCCTTATGCTGCTTGTGCCCAAAGCCCTCGTCAATAGTTGCCTT  1050

seq1  TGGACTTGAAGAGTTGATTGAAGTG-AGGCTTACAGTAGATTCGTCCATG  1098
      |||||||| |||||||||||||||| || ||||||||| |||||||||||
seq2  TGGACTTG-AGAGTTGATTGAAGTGAAGCCTTACAGTAAATTCGTCCATG  1099

seq1  TAAGGATGCATATGTTCCTAG-ACTGTCACCAAAAGAG-AAAACA-CTAA  1145
      ||||||||||||||||||||| ||||||| |||||||| |||||| ||||
seq2  TAAGGATGCATATGTTCCTAGAACTGTCA-CAAAAGAGAAAAACACCTAA  1148

seq1  GTCAGCGAATC  1156
      |||||||||||
seq2  GTCAGCGAATC  1159

seq1: chr3_32026252_32026390
seq2: B6Ng01-227K09.g_139_308

seq1  ATACAGTTTCTCTGAATGTGTACGTTCCTAC-----------GTAGTCTG  39
      ||||| |||||||||| || |   || || |           | ||||| 
seq2  ATACA-TTTCTCTGAAAGTTTCTTTTTCTCCTATGACTTTCAGAAGTCTA  49

seq1  TGTGC-------ATGCATAATCTCCTCCTGGAC----CCCCCCTCTCTCT  78
      | | |        ||| |  | || |  ||| |     | | ||||||||
seq2  TATTCTCATAATTTGCTTTTTATCTTTTTGGCCATTTGCTCTCTCTCTCT  99

seq1  CTCTCTCTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGT  128
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  149

seq1  GTGTGTGTGTG----------  139
      ||| | ||| |          
seq2  GTGCGAGTGAGTGCGTGTGTG  170