BAC Information

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BAC

Clone NameB6Ng01-227M15
Chromosome15 (Build37)4 (Build37)
Map Location 69,821,108 - 69,822,28338,110,314 - 38,110,727
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKhdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227M15.bB6Ng01-227M15.g
ACCGA041368GA041369
length1,171969
definitionB6Ng01-227M15.b B6Ng01-227M15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,821,108 - 69,822,283)(38,110,314 - 38,110,727)
sequence
gaattcacacccagtcactgcccatctcagggcatagtaatggggtgatg
ggcaagcaactaatcaggtgctgtcacgccacatcaggtgctgaaacgtc
acactgcgggctatataagcagcaccattttccgggttcgggtcttcctt
atgtggaagcaataaaagctttgccgtagaaggatccagttgtccaagtg
aattcttgccggcgagatactagcttgggcaagacctagccaatatcctg
cttttgggaacaggtgtgttctcccagatacaaagcgattctgcatcctc
ctcctccccatacccagcttctgtgggcataaaacctgcctgggattaat
aaaaatttgacagctgggtcaatcagtccttgtgtttcttgcctctcgtt
ctctccacaggtggttcctcagaccctgttcgacggggttggcagcaagg
gattgaaggaagacataatctggatgttcctactgcaagcaatcctcagg
gaatgctggcagcattgtggaatacaaatgtattgcaggtgacaaggctg
ctgctggtgtacctacggggacctgggaggcaagggtcttggcacagagt
cctatctggttgtttcagaatttggaaggccctcaggaatcagacagaat
tttgggctaagagatggatggacctcagggacagggaacacctcactgct
cctgggtgccttagcatgaccatgtaggccagggattggagggtaaatga
ctcacctggatatccttgatcctagcaggcataagaaaaggcaggcatag
ccatgggccaggatatggagcacagtaaacagggtgcagtaaacaggggc
ggggggggtgacacttctgtattttgttttctcacttcagttttggggaa
tgtaatggctatgaattgcctgttttatggctttgtcagctggtgtgttc
atggtaaattcctgatggaattggatactgggatgagtttgaaaaggcaa
tttgaagtgtctttgtgatccttggggaatggggtcagagtagaaagaag
accaatccatttttcttgttatcaattggaatgattgatatcaggaggag
tagaagtaatgggcctaccttcagctatttgtttgtccctgaagctcgca
cgctcttggcttagcattgat
gaattcctgatctttccaaaacttttaccatgaagggatgttgaatttta
tccaatgctttttcagcatctaatgaaatcattatgtaggtttttttttt
ttccttcgagtttgtttatatagtggattatattggtgacttctttatat
tgaagcatccctgcatcctagggatgaagccaaccttgatcatgatggtt
gattgttttgatgttttcttggattcagtttgtgagaatttagtgaatac
ttttgcattgataaggaaaactgctctgaaattctctttcactgttgggt
ttttgtgagactttgctatcagtgtaactgtggcttcatagaatgaatca
aatagtgtttctctttctattttttggattagtttgaagagtattggtat
tagatcttcttagaaggtcttatagaccttatttttgtttctatatagtt
gatttcagttctgtgtttgatttttttcctgccatctactccttttaggt
gtatttggttctttttgttctagaattttcaggtatgctgtcaagctgct
agtgtatgctttctccagtttctttttggagtcactcagcgttatgagtt
ttcctcttagcactgctttcattatgtcccaaaagtttgtgtttcttatg
ccttcattttcatttaaattctgaaaagtcttaaccacataaaattttat
tcagagaatcttatattttaaataaaattttatatttaaaattcaggaag
ttttagaagaaattttgatttgtttaccataataaaaattttatttgaaa
tgatagatatgtttcaactcatataacaagatagggatatgtcaagttgc
acagaggactccatcaatagtgtatgattttatgtttttatttattaagt
aaaataagtttttttcagttaatgacatcaaatggtttgtgtctatttat
tagtttgaacaattttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_69821108_69822283
seq2: B6Ng01-227M15.b_46_1216

seq1  GAATTCACACCCAGTCACTGCCCATCTCAGGGCATAGTAATGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCCAGTCACTGCCCATCTCAGGGCATAGTAATGGGGTGATG  50

seq1  GGCAAGCAACTAATCAGGTGCTGTCACGCCACATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAACTAATCAGGTGCTGTCACGCCACATCAGGTGCTGAAACGTC  100

seq1  ACACTGCGGGCTATATAAGCAGCACCATTTTCCGGGTTCGGGTCTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCGGGCTATATAAGCAGCACCATTTTCCGGGTTCGGGTCTTCCTT  150

seq1  ATGTGGAAGCAATAAAAGCTTTGCCGTAGAAGGATCCAGTTGTCCAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAGCAATAAAAGCTTTGCCGTAGAAGGATCCAGTTGTCCAAGTG  200

seq1  AATTCTTGCCGGCGAGATACTAGCTTGGGCAAGACCTAGCCAATATCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGCCGGCGAGATACTAGCTTGGGCAAGACCTAGCCAATATCCTG  250

seq1  CTTTTGGGAACAGGTGTGTTCTCCCAGATACAAAGCGATTCTGCATCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGAACAGGTGTGTTCTCCCAGATACAAAGCGATTCTGCATCCTC  300

seq1  CTCCTCCCCATACCCAGCTTCTGTGGGCATAAAACCTGCCTGGGATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCATACCCAGCTTCTGTGGGCATAAAACCTGCCTGGGATTAAT  350

seq1  AAAAATTTGACAGCTGGGTCAATCAGTCCTTGTGTTTCTTGCCTCTCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTGACAGCTGGGTCAATCAGTCCTTGTGTTTCTTGCCTCTCGTT  400

seq1  CTCTCCACAGGTGGTTCCTCAGACCCTGTTCGACGGGGTTGGCAGCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACAGGTGGTTCCTCAGACCCTGTTCGACGGGGTTGGCAGCAAGG  450

seq1  GATTGAAGGAAGACATAATCTGGATGTTCCTACTGCAAGCAATCCTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGGAAGACATAATCTGGATGTTCCTACTGCAAGCAATCCTCAGG  500

seq1  GAATGCTGGCAGCATTGTGGAATACAAATGTATTGCAGGTGACAAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGGCAGCATTGTGGAATACAAATGTATTGCAGGTGACAAGGCTG  550

seq1  CTGCTGGTGTACCTACGGGGACCTGGGAGGCAAGGGTCTTGGCACAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTGTACCTACGGGGACCTGGGAGGCAAGGGTCTTGGCACAGAGT  600

seq1  CCTATCTGGTTGTTTCAGAATTTGGAAGGCCCTCAGGAATCAGACAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGGTTGTTTCAGAATTTGGAAGGCCCTCAGGAATCAGACAGAAT  650

seq1  TTTGGGCTAAGAGATGGATGGACCTCAGGGACAGGGAACACCTCACTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCTAAGAGATGGATGGACCTCAGGGACAGGGAACACCTCACTGCT  700

seq1  CCTGGGTGCCTTAGCATGACCATGTAGGCCAGGGATTGGAGGGTAAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGCCTTAGCATGACCATGTAGGCCAGGGATTGGAGGGTAAATGA  750

seq1  CTCACCTGGATATCCTTGATCCTAGCAGGCATAAGAAAAGGCAGGCATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGGATATCCTTGATCCTAGCAGGCATAAGAAAAGGCAGGCATAG  800

seq1  CCATGGGCCAGGATATGGAGCACAGTAAACAGGGTGCAGTAAACAGGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGCCAGGATATGGAGCACAGTAAACAGGGTGCAGTAAACAGGGGC  850

seq1  GGGGGGGGTGACACTTCTGTATTTTGTTTTCTCACTTCAGTTTTGGGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGTGACACTTCTGTATTTTGTTTTCTCACTTCAGTTTTGGGGAA  900

seq1  TGTAATGGCTATGAATTGCCTGTTTTATGGCTTTGTCAGCTGGTGTGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGCTATGAATTGCCTGTTTTATGGCTTTGTCAGCTGGTGTGTTC  950

seq1  ATGGTAAATTCCTGATGGAATTGGATACTGGGATGAGTTTGAAAAGGCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAATTCCTGATGGAATTGGATACTGGGATGAGTTTGAAAAGGCAA  1000

seq1  TTTTGAAGGTGGTCTTTGTGATTCCTTGGGGAATGGGGTCAGAGTAGAAA  1050
       |||||||   |||||||||| ||||||||||||||||||||||||||||
seq2  -TTTGAAG--TGTCTTTGTGA-TCCTTGGGGAATGGGGTCAGAGTAGAAA  1046

seq1  GGAAGACCAAAACCATTTTCCTGTTATCAAAATTGGAATGATTGAATATC  1100
       |||||||||  |  ||||| |||||||  |||||||||||||| |||||
seq2  -GAAGACCAATCCATTTTTCTTGTTATC--AATTGGAATGATTG-ATATC  1092

seq1  AGGAGGAGTAGAAGT-ATGGGCCTACCTTCAGCCTATTTGTT--GCCCTG  1147
      ||||||||||||||| |||||||||||||||| |||||||||   |||||
seq2  AGGAGGAGTAGAAGTAATGGGCCTACCTTCAG-CTATTTGTTTGTCCCTG  1141

seq1  AAAGCT-GCA-GCTCTTGGGTTAGCATTGAT  1176
       ||||| ||| |||||||| |||||||||||
seq2  -AAGCTCGCACGCTCTTGGCTTAGCATTGAT  1171

seq1: chr4_38110314_38110727
seq2: B6Ng01-227M15.g_74_484 (reverse)

seq1  AAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCATAAAATAGAAGCA  50
      ||||||||||||| ||| | ||   ||||||| |||| |||||||||  |
seq2  AAGAAGATCTAATACCAATACTCTTCAAACTAATCCAAAAAATAGAAAGA  50

seq1  GAATTCTCTCTACCCAATTCATTCTATGAAGCCACAATTATTCTAATACC  100
      |||    | |||    |||||||||||||||||||| |||  || ||| |
seq2  GAA---ACACTATTTGATTCATTCTATGAAGCCACAGTTACACTGATAGC  97

seq1  TAAACCACAGACAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCCC  150
       ||  | || | | ||||||||  || |||||| |||||| || ||| ||
seq2  AAAGTCTCACAAAAACCCAACAGTGAAAGAGAATTTCAGAGCAGTTTTCC  147

seq1  TTATGAATACCAATGCAAAAATACTCAATAAAATTCTTATTAATGAAATC  200
      ||||      |||||||||| || ||| | ||||||| |  ||   ||||
seq2  TTAT------CAATGCAAAAGTATTCACT-AAATTCTCACAAACTGAATC  190

seq1  CAAGAACACATCAAAATAATCATCCATTCTGACCAA-GTAGTTTTCATTC  249
      |||||| ||||||||| ||||| ||||  ||| ||| || |  ||||| |
seq2  CAAGAAAACATCAAAACAATCAACCATCATGATCAAGGTTGGCTTCATCC  240

seq1  CATAGATGCAGGGATGGTTTAATATATGGAAATCCACCAATATAATCCAC  299
      |   |||||||||||| || ||||||  ||| | ||||||||||||||||
seq2  CTAGGATGCAGGGATGCTTCAATATAAAGAAGT-CACCAATATAATCCAC  289

seq1  TATATAAACAAACTC-------AAAGACAAAAGCCACATGATCATCTCCT  342
      |||||||||||||||       ||| | |||| | |||| || || || |
seq2  TATATAAACAAACTCGAAGGAAAAAAAAAAAACCTACATAATGATTTCAT  339

seq1  TAGCTGAAGAGAAAGCATTTGACAAAATCCAACTCCCATTCATGATAAAA  392
      ||| ||  || |||||||| || ||||| ||||  || |||||| |||||
seq2  TAGATGCTGAAAAAGCATTGGATAAAATTCAACATCCCTTCATGGTAAAA  389

seq1  GTTTTGGAAAGATCAGGAATTC  414
      ||||||||||||||||||||||
seq2  GTTTTGGAAAGATCAGGAATTC  411