BAC Information

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BAC

Clone NameB6Ng01-229E14
Chromosome15 (Build37)
Map Location 103,197,593 - 103,318,639
singlet/doubletdoublet
Overlap gene1700006H03Rik, BC048502, LOC668321, Nckap1l
Upstream geneSp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
Downstream genePde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229E14.bB6Ng01-229E14.g
ACCGA042477GA042478
length328351
definitionB6Ng01-229E14.b B6Ng01-229E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,318,306 - 103,318,639)(103,197,593 - 103,197,949)
sequence
tgtacatgttttgattcccaagtaaggaagttcctaacaccttctttaat
tcttccagctcaccacttcagacctctttcctttaaaggaatcaatcata
agagaaatagcctgttcattataccagaaggaacttgtccccaggctttg
gctgtatttcctgcataacacatttgtttgtactagaggattcaaaaggc
aagctaattccaagggtggagggaatggacagttaactccattcgcctgc
agaagctgttctctctctctctctctctctctctctctctctctctctct
ctctctctctctctctctctctctctct
cgcggctgcccctccccaagctgatagagtggaaagcataggacttttgg
ggtctctgacacaggagcattgggctttatttgctaacgttgggtttgga
agtctctgttctggccctttcttggatttgatacctgaccaagtggccaa
cctctcaattcagttccttcatcagattgcctgatttcctggataagccc
cagaaagataagtgatgggtagcagttgtgatggtggtggtggggagtct
tcaaagggaaccaactttcagcttctgttggccatctgaaacccaagaca
cttgcattatttgtgtaagtagaggaaggggtggtagtaagtgaaggtac
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_103318306_103318639
seq2: B6Ng01-229E14.b_40_373 (reverse)

seq1  AGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAACAGCTTCTGCAGGCGAATGGAGTTAACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAACAGCTTCTGCAGGCGAATGGAGTTAACTGT  100

seq1  CCATTCCCTCCACCCTTGGAATTAGCTTGCCTTTTGAATCCTCTAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCTCCACCCTTGGAATTAGCTTGCCTTTTGAATCCTCTAGTACA  150

seq1  AACAAATGTGTTATGCAGGAAATACAGCCAAAGCCTGGGGACAAGTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGTGTTATGCAGGAAATACAGCCAAAGCCTGGGGACAAGTTCCT  200

seq1  TCTGGTATAATGAACAGGCTATTTCTCTTATGATTGATTCCTTTAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTATAATGAACAGGCTATTTCTCTTATGATTGATTCCTTTAAAGGA  250

seq1  AAGAGGTCTGAAGTGGTGAGCTGGAAGAATTAAAGAAGGTGTTAGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCTGAAGTGGTGAGCTGGAAGAATTAAAGAAGGTGTTAGGAACT  300

seq1  TCCTTACTTGGGAATCAAAACATGTACAGAATTC  334
      ||||||||||||||||||||||||||||||||||
seq2  TCCTTACTTGGGAATCAAAACATGTACAGAATTC  334

seq1: chr15_103197593_103197949
seq2: B6Ng01-229E14.g_67_423

seq1  GAATTCCGCGGCTGCCCCTCCCCAAGCTGATAGAGTGGAAAGCATAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCGGCTGCCCCTCCCCAAGCTGATAGAGTGGAAAGCATAGGAC  50

seq1  TTTTGGGGTCTCTGACACAGGAGCATTGGGCTTTATTTGCTAACGTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGTCTCTGACACAGGAGCATTGGGCTTTATTTGCTAACGTTGGG  100

seq1  TTTGGAAGTCTCTGTTCTGGCCCTTTCTTGGATTTGATACCTGACCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGTCTCTGTTCTGGCCCTTTCTTGGATTTGATACCTGACCAAGT  150

seq1  GGCCAACCTCTCAATTCAGTTCCTTCATCAGATTGCCTGATTTCCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTCTCAATTCAGTTCCTTCATCAGATTGCCTGATTTCCTGGAT  200

seq1  AAGCCCCAGAAAGATAAGTGATGGGTAGCAGTTGTGATGGTGGTGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCAGAAAGATAAGTGATGGGTAGCAGTTGTGATGGTGGTGGTGGG  250

seq1  GAGTCTTCAAAGGGAACCAACTTTCAGCTTCTGTTGGCCATCTGAAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTCAAAGGGAACCAACTTTCAGCTTCTGTTGGCCATCTGAAACCC  300

seq1  AAGACACTTGCATTATTTGTGTAAGTAGAGGAAGGGGTGGTAGTAAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACTTGCATTATTTGTGTAAGTAGAGGAAGGGGTGGTAGTAAGTGA  350

seq1  AGGTACC  357
      |||||||
seq2  AGGTACC  357