BAC Information

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BAC

Clone NameB6Ng01-229P02
Chromosome15 (Build37)
Map Location 5,406,047 - 5,407,142
singlet/doubletsinglet
Overlap genenone
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308
Downstream geneLOC666291, LOC666319, LOC100039358, LOC666323, Dab2, C9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229P02.bB6Ng01-229P02.g
ACCGA042937GA042938
length1,1141,126
definitionB6Ng01-229P02.b B6Ng01-229P02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatttacctggaaagaaaaatgaaaccatgagctctgcaaataa
ataaatgtaactagaaaagatcatattgagtgacgtaattcagaccttta
aggtcatagatttcatgttctctctcattggagctcctagttccaaatct
tcagacaggagcacataccctagagtaactgcagaaaccagcaaagtaca
aagggaccatttctaggatagaggttggggaaaatagagaagggaagaac
aggaagaattatattttaaagtcaagtaacctttaatatatataatcaga
gaactagcaaataaaattgggcctcagttactcctttggaatacaaagat
cttatttttaaatctgccagaaattgatcagtttgagaacaggatttctg
tcagatctagcatttatgcagcttgtttgacatctgctgtcagcttcaag
atagatcctgagatcctagctgttcatgtatagacttgaactaacacatg
aacactgttttaagataataatcagtgttaacttgacacacttcaataga
aaaccactgcaatgctaataccaggaaaataaatgcatgtctagactctg
taaaacaggaaagagagattttttaaaaaagtcataaacacaaaggcaag
tcaccgacaacatttaattatttttattttgggacaggatttcatgcagc
gtaggatgttcttaaactcactgtgtggccaagaatgaccttgaattctt
gaccttcctctttctgttttcatgagtgctggagttaaatacataaccca
tcacccctggagccatacaggactagggatccaacccagaggcctctaat
atgccagtcaagcactgtacacactgagatacacctggtagctctgtgtc
taaccgctggcatctcaacagcaatagtaaagtctagataaccaccaaaa
tcatattgtccagcatggtgaaagaaaaagaagtttgtttagaggaaggg
gtttctcaacccttccctaatgcgcccccttcatgtttatggtgaacccc
gaacctaaaaatatttccactgtctacttttgtacctgcactttttgata
ttggtctagcaatc
gaattcaagaaggtggactccagaaaaatcaaataactccattaaaaaat
ggggctcagagctaaacaaagaattcttacctgaggaataccgaatggct
gagaagcacctgaaaaaaaatgtttaacatccttaatcatcagggaaatg
caaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaa
aatcaaaaattcaggtgacagcagatgctggtgaggatgtggagaaagag
gaacactcctccattattggtgggattgtaagcttgaacaaccactctgg
aaatcagtctggcggttcctcagaaaattggacatagtactaccggagga
tcccgcaataactctcctgagcatatattcagaagatgttccaaccggta
agaaggacacatgctccactatgttcatagcagccttatttataatagcc
agaagctggaaagaacccagatgcccctcaacagaagaatagatacagaa
aatgtggtacatttacacaatggagtactactcagctattaaaaagaatg
aatttatgaaattcctaggcaaatggatggacctggagtgcatcattcta
agtgaggtaacccaatcacaaaggaactcacacaatatgtactcactgat
aagtggatattagcccagaaacttagaatacccaagatataagatacaat
ttgctaaacacacgaaactcaagaagaactgagaccaaagtgtggacatt
tttccccttcttagaattgggaacaaaacacccatggaaggagttacaga
gacaaagtttggagctgagacaaaatgatgaaccatctagagactgccat
accggggatccatcccataatcagcctccaaacgctgacaccattgcata
tgaaagactctgaaggagcccttcgctcaggcctcagacatagccggaca
cccaagaactcaccaatagaccgagcttgttgcaaaccacatgaggcttt
atttcgggaaaagcagagttcttggacaactcatatcccacacggaggta
gaggagtcgacctgcgaggctgatgtcctagttttatagccctcaggggt
aatggaaaaatatgggaaagacggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5406047_5407142
seq2: B6Ng01-229P02.b_45_1158

seq1  GAATTCTATTTACCTGGAAAGAAAAATGAAACCATGAGCTCTGCAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTACCTGGAAAGAAAAATGAAACCATGAGCTCTGCAAATAA  50

seq1  ATAAATGTAACTAGAAAAGATCATATTGAGTGACGTAATTCAGACCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAACTAGAAAAGATCATATTGAGTGACGTAATTCAGACCTTTA  100

seq1  AGGTCATAGATTTCATGTTCTCTCTCATTGGAGCTCCTAGTTCCAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATAGATTTCATGTTCTCTCTCATTGGAGCTCCTAGTTCCAAATCT  150

seq1  TCAGACAGGAGCACATACCCTAGAGTAACTGCAGAAACCAGCAAAGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGGAGCACATACCCTAGAGTAACTGCAGAAACCAGCAAAGTACA  200

seq1  AAGGGACCATTTCTAGGATAGAGGTTGGGGAAAATAGAGAAGGGAAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACCATTTCTAGGATAGAGGTTGGGGAAAATAGAGAAGGGAAGAAC  250

seq1  AGGAAGAATTATATTTTAAAGTCAAGTAACCTTTAATATATATAATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAATTATATTTTAAAGTCAAGTAACCTTTAATATATATAATCAGA  300

seq1  GAACTAGCAAATAAAATTGGGCCTCAGTTACTCCTTTGGAATACAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGCAAATAAAATTGGGCCTCAGTTACTCCTTTGGAATACAAAGAT  350

seq1  CTTATTTTTAAATCTGCCAGAAATTGATCAGTTTGAGAACAGGATTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTAAATCTGCCAGAAATTGATCAGTTTGAGAACAGGATTTCTG  400

seq1  TCAGATCTAGCA-AAATGCAGCTTGTTTGACATCTGCTGTCAGCTTCAAG  449
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  TCAGATCTAGCATTTATGCAGCTTGTTTGACATCTGCTGTCAGCTTCAAG  450

seq1  ATAGATCCTGAGATCCTAGCTGTTCATGTATAGACTTGAACTAACACATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCCTGAGATCCTAGCTGTTCATGTATAGACTTGAACTAACACATG  500

seq1  AACACTGTTTTAAGATAATAATCAGTGTTAACTTGACACACTTCAATAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTTTTAAGATAATAATCAGTGTTAACTTGACACACTTCAATAGA  550

seq1  AAACCACTGCAATGCTAATACCAGGAAAATAAATGCATGTCTAGACTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTGCAATGCTAATACCAGGAAAATAAATGCATGTCTAGACTCTG  600

seq1  TAAAACAGGAAAGAGAGATTTTTTAAAAAAGTCATAAACACAAAGGCAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGGAAAGAGAGATTTTTTAAAAAAGTCATAAACACAAAGGCAAG  650

seq1  TCACCGACAACATTTAATTATTTTTATTTTGGGACAGGATTTCATGCAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGACAACATTTAATTATTTTTATTTTGGGACAGGATTTCATGCAGC  700

seq1  GTAGGATGTTCTTAAACTCACTGTGTGGCCAAGAATGACCTTGAATTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGTTCTTAAACTCACTGTGTGGCCAAGAATGACCTTGAATTCTT  750

seq1  GACCTTCCTCTTTCTG-TTTCATGAGTGCTGGAGTTAAATACATAACCCA  798
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACCTTCCTCTTTCTGTTTTCATGAGTGCTGGAGTTAAATACATAACCCA  800

seq1  TCACCCCTGGAGCCATACAGGACTAGGGATCCAACCCAGAGG-CTCTAAT  847
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCACCCCTGGAGCCATACAGGACTAGGGATCCAACCCAGAGGCCTCTAAT  850

seq1  ATGCCAGTCAAGCACTGTACACACTGAGATACA-CTTGTAGCTCTGTGTC  896
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  ATGCCAGTCAAGCACTGTACACACTGAGATACACCTGGTAGCTCTGTGTC  900

seq1  TAACCGCTGGCATCTCAACAGCAATAGTAAAGTCTAGATAACCA-CAAAA  945
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAACCGCTGGCATCTCAACAGCAATAGTAAAGTCTAGATAACCACCAAAA  950

seq1  TCATATTGTCAAGCAT-GTGAAAG-AAAAGAAGTTTGTTTAGA-GAAGGG  992
      |||||||||| ||||| ||||||| |||||||||||||||||| ||||||
seq2  TCATATTGTCCAGCATGGTGAAAGAAAAAGAAGTTTGTTTAGAGGAAGGG  1000

seq1  G-TTCTCAACC--TTCCTAATGCGGCCACCTCATG-TTATGGTG-ACCCC  1037
      | |||||||||  | ||||||||| || | ||||| |||||||| |||||
seq2  GTTTCTCAACCCTTCCCTAATGCGCCCCCTTCATGTTTATGGTGAACCCC  1050

seq1  GAACCATAAAATTATTT-CAATG-CTAC-TTTGTAACTGCA-ATTTTGAT  1083
      ||||| ||||| ||||| || || |||| |||||| |||||  |||||||
seq2  GAACC-TAAAAATATTTCCACTGTCTACTTTTGTACCTGCACTTTTTGAT  1099

seq1  ATTG--TTAGCAATC  1096
      ||||   ||||||||
seq2  ATTGGTCTAGCAATC  1114