BAC Information

Click to search

BAC

Clone NameB6Ng01-232O23
Chromosome15 (Build37)
Map Location 52,151,976 - 52,153,042
singlet/doubletsinglet
Overlap geneSlc30a8
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219
Downstream geneLOC100039748, Thrap6, LOC100039745, Ext1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232O23.bB6Ng01-232O23.g
ACCGA045146GA045147
length1,2171,079
definitionB6Ng01-232O23.b B6Ng01-232O23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggatcccttcatattaaaagtcttggaaaaatcagaaattcaa
ggccccttcataaacataataaaagcaatatacagcaaaccagtagccaa
catcaaactaaatggagagaaacttgaagcaattctaccaaaatcaagcc
taggatttagccttgtctaaaaccaagagacaaggctgcccactctctct
ccctacatagtcaacatagtacttgaagttttagctagggcaattagaca
tcaaaaggaggtcaaagggattaaaaattagaatggaagaaattaaaata
ttactatttgcggataatatgattatgtacttaagtggccccaaaaattt
caccagagaactaaagctggtaaacaacttcagcaaagtggctggatata
aaataaactcaaacaaatcagtagtcttcctctactcaaaggataaacag
gctgagaaagaaattagggaaacaacacacttcacaatagtcacaaataa
tataaaataccttggtgtaattctaaccaaggaagtgaaagatctgtgct
acatccactccagtagtgacttgcttgacaggcttagaaacttttaagca
gtcctgaggcaaagagtttcacagaaacttagtctcctggaactgtggca
tcccgtataaggaatgctccaaacttgtccttgtgaatggatctgtgtac
tttctttcagtattgttttattataggtgcctccaagcaatgacttgcca
aatacctaaggaaaatcaaactttgcttcctggccttcaccaatgcccta
gatagtccttgagcgacattgggcttggaattcagtaagaatgttgccta
ttcagtgaccttcagaattgcctttagtattgtaagagagatagtgaaag
aaatcaggcattactatcaactacatagagttagaaatctcaggcaagct
tagcaagtaagtttagaattcttattatagttatgtatgccagactacat
tacttattagtagaaagtccccccacactatcacttagaataaaagacaa
gtcacctcccatatataggaatttaacatgcctaaggaagttagtcagct
gtggtttagaaatatgcattattcatgagaaagttagctagacggaaact
cctaatagaactattgcttggggtttcaaagtcctttggtcgggaagacg
cataaagaactcattca
gaattcattaggctccctattactgggtaattttcagcaaatttttagaa
catattaattgctgcctgccctccctgttctcctggggaattttaattta
cacaggtgctaaaatgatgaaaacttattagggagggatgaaataatgag
atacgacgagtaaaatgtgtttagaaactcttaatttcaccataaaacat
ttacaacttgccagcactggcacctttagaggaataagctagtaaaaaag
gaaagcatcagagtgtactttacgaaaatgggtttcatttgccaacccga
catattgtaaacacagaggcagactcaagggcttctcggggctgcaactg
ctctttaagagcaacctcaaggaaaagaaacatctaatggaaacatttgc
attaatatttgaagataagggagatctcagtgtgcttgtttaaaaaagaa
cgtacttcggctcacatggacattccttaatatctcaccttgttctttca
accttgtagatagactttaaaaccccacaaaggtctattctctactcctt
gccctggtttcattcttgtgctgtgacaaacaccaatctaggagaagaat
gggtttgtttggcttaacttccaggccacaatctatcgtagagggaagtc
aagaccagaactcaagcaagaacttaaagaagaaaccatagaggagtgct
gctttgatggtttatgtttagctagactttcttatgcagcacaagaccac
cagcctagggattggtgccacccatattaggcagggccctccaagagcaa
tcaagactatcctccagagacatgcccacaagcctgtggctaatctgccc
acagacttaatctgatctaggcaatctcttagttgagagtttcttctcag
ttgactataagctgtatcaagacaattaacaccaactacaacacttccct
tttacattattcttatgtattagagtcttgctaaagcagaattatagact
ttaatctaccatgtggctaattgccttcttctgacctcagttcagcttaa
tataaccatcttcatttttttgccatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_52151976_52153042
seq2: B6Ng01-232O23.g_66_1144 (reverse)

seq1  AATATGGCAAAAAAATGAAGATTG-TATAT--AGCTG-ACTGGAGTCAG-  45
      |||||||||||||||||||||| | |||||  ||||| ||||  ||||| 
seq2  AATATGGCAAAAAAATGAAGATGGTTATATTAAGCTGAACTGAGGTCAGA  50

seq1  AGAA-GCAATTAGCCACATGGTAGATTAAAGTCTATAATTCTGCTTTAGC  94
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAATTAGCCACATGGTAGATTAAAGTCTATAATTCTGCTTTAGC  100

seq1  -AGGCTCTAATACATAAGAATAATGTAAA--GGGAGTGTTGTAGTTGGTG  141
       || |||||||||||||||||||||||||  || ||||||||||||||||
seq2  AAGACTCTAATACATAAGAATAATGTAAAAGGGAAGTGTTGTAGTTGGTG  150

seq1  TTAATTGTCTTGATACAGCTTATAGTCAACTGAGAAGAAACTCTCAACTA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTCTTGATACAGCTTATAGTCAACTGAGAAGAAACTCTCAACTA  200

seq1  AGAGATTGCCTAGATCAGATT-AGTCTGTGGGCAGATTAGCCACAGGCTT  240
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGATTGCCTAGATCAGATTAAGTCTGTGGGCAGATTAGCCACAGGCTT  250

seq1  GTGGGCATGTCTCTGGAGGATAGTCTTGATTGCTCTTGGAGGGCCCTGCC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATGTCTCTGGAGGATAGTCTTGATTGCTCTTGGAGGGCCCTGCC  300

seq1  TAATATGGGTGGCACCAATCCCTAGGCTGGTGGTCTTGTGCTGCATAAG-  339
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAATATGGGTGGCACCAATCCCTAGGCTGGTGGTCTTGTGCTGCATAAGA  350

seq1  AAGTCTAGCTAAACATAAACCATC-AAGCAGCACTCCTCTATGGTTTCTT  388
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGTCTAGCTAAACATAAACCATCAAAGCAGCACTCCTCTATGGTTTCTT  400

seq1  CTTTAAGTTCTTGCTTGAGTTCTGGTCTTGACTTCCCTCTACGATAGATT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTTCTTGCTTGAGTTCTGGTCTTGACTTCCCTCTACGATAGATT  450

seq1  GTGGCCTGGAAGTTAAGCCAAACAAACCCATTCTTCTCCTAGATTGGTGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTGGAAGTTAAGCCAAACAAACCCATTCTTCTCCTAGATTGGTGT  500

seq1  TTGTCACAGCACAAGAATGAAACCAGGGCAAGGAGTAGAGAATAGACCTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAGCACAAGAATGAAACCAGGGCAAGGAGTAGAGAATAGACCTT  550

seq1  TGTGGGGTTTTAAAGTCTATCTACAAGGTTGAAAGAACAAGGTGAGATAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTTTTAAAGTCTATCTACAAGGTTGAAAGAACAAGGTGAGATAT  600

seq1  TAAGGAATGTCCATGTGAGCCGAAGTACGTTCTTTTTTAAACAAGCACAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATGTCCATGTGAGCCGAAGTACGTTCTTTTTTAAACAAGCACAC  650

seq1  TGAGATCTCCCTTATCTTCAAATATTAATGCAAATGTTTCCATTAGATGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTCCCTTATCTTCAAATATTAATGCAAATGTTTCCATTAGATGT  700

seq1  TTCTTTTCCTTGAGGTTGCTCTTAAAGAGCAGTTGCAGCCCCGAGAAGCC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCTTGAGGTTGCTCTTAAAGAGCAGTTGCAGCCCCGAGAAGCC  750

seq1  CTTGAGTCTGCCTCTGTGTTTACAATATGTCGGGTTGGCAAATGAAACCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTCTGCCTCTGTGTTTACAATATGTCGGGTTGGCAAATGAAACCC  800

seq1  ATTTTCGTAAAGTACACTCTGATGCTTTCCTTTTTTACTAGCTTATTCCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCGTAAAGTACACTCTGATGCTTTCCTTTTTTACTAGCTTATTCCT  850

seq1  CTAAAGGTGCCAGTGCTGGCAAGTTGTAAATGTTTTATGGTGAAATTAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGTGCCAGTGCTGGCAAGTTGTAAATGTTTTATGGTGAAATTAAG  900

seq1  AGTTTCTAAACACATTTTACTCGTCGTATCTCATTATTTCATCCCTCCCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAAACACATTTTACTCGTCGTATCTCATTATTTCATCCCTCCCT  950

seq1  AATAAGTTTTCATCATTTTAGCACCTGTGTAAATTAAAATTCCCCAGGAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTTTCATCATTTTAGCACCTGTGTAAATTAAAATTCCCCAGGAG  1000

seq1  AACAGGGAGGGCAGGCAGCAATTAATATGTTCTAAAAATTTGCTGAAAAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGAGGGCAGGCAGCAATTAATATGTTCTAAAAATTTGCTGAAAAT  1050

seq1  TACCCAGTAATAGGGAGCCTAATGAATTC  1067
      |||||||||||||||||||||||||||||
seq2  TACCCAGTAATAGGGAGCCTAATGAATTC  1079