BAC Information

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BAC

Clone NameB6Ng01-233D06
Chromosome15 (Build37)
Map Location 43,346,186 - 43,479,995
singlet/doubletdoublet
Overlap geneTtc35
Upstream geneAngpt1, Rspo2, LOC675960, Eif3s6
Downstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233D06.bB6Ng01-233D06.g
ACCGA045334GA045335
length967990
definitionB6Ng01-233D06.b B6Ng01-233D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,346,186 - 43,347,151)(43,479,006 - 43,479,995)
sequence
gaattcagtttcttttctcttgtaagattccaattataaatgcattcctt
cactgttcttgcctcttactctttttctttttctttttttctgtgattct
gtcattttaacataataataagctatggtgtttgttcactttctttttct
ttttccacattgagttggtaactgtgtgggatgggcactggagatgtgat
aaggtagctttcctggccttactgtgtcctcctccctttgttgctgagat
ctccgttataaccgctgggtgtctggtctttgtgccagttaagcctgact
tggttttcttttcttttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttctttctttcttttttttttattagaaa
aaaatttattttattttttttattagatattttcttcatttatgtttcaa
atgctatcccctttcctagttttctctccttaagtcccctataccctccc
cccgccctgctccttaacccacccactcctgcttcctggcccttacattc
ctctgtactggggcatataatcttcacaaggccaagggcctctcctccca
atgatggccgactaggattttctgattctggtcttcagttacacctcaca
gagttctgtaggcgtggagtcctctgagcctgtggtgtccactctgctgt
tagctcctcctcagcttccttagatcatttcttcctcctgttccatgttt
ctgtcctatgcaatttggtttcggatgttagtatttttcttcatactttg
aaggatttatgcttcaagaaacagaagtaattggctgctagtttgagatc
ttatatatagttcaatttgtttaatcatgttacatacagttttcaaatgt
gcctgtaatttgaaggctgggaagatacttaccgaggttgtgtgttgttg
tttgtttgtttgtttgt

gaattctcatctcatatcatttctgcaaaagtcctgatctgttacaatat
tccagatttgataatgagcatgagataacagaactttatccatatctaaa
actggttagctacatgcatttggcaagccaactagactcatttatttatc
tggaaaataagactaattattttactacttatatttgcttcaaaaatagt
cactatttgtgaaacttatgatgctttatgtaatggtattaagtaccatt
tttaattatttcattactttatgagccataatactgttaagtatattcca
ctgttcagaaaatttggccaatcttcaatactaccttatttaacacaaaa
ataatacgagctcaaaggatataaaaaaatcaatgctgaaaaatgtacgg
aacaatcatatgcaaatatttgaagatacgcctttctgataatgaatgac
aagttagctcactggcagaaagataatcattatttgatatatttattagt
tattagaagctagatggaaacagagatgttatgggaaaaaaagagttatg
tgctctcctgtaggaggaggtgctaatactaaagtctggttccctaattg
gttctggatttggtcagtaaaggaggctgagaccaggagacaatggctgg
gaggaagggacaagtgggacttccaggtcccaggagggaaaggagatgca
gggaaagagaaagggcttttttttgttttggtttgttttttgtttttttt
ttcttttttttttaattacatattttcttcaattacatttccaatgctat
cccaaaagcccccccccccccccactcccctacccacccattcccatttt
ttggccctggcattcccctgtactggggcatataaacgtttgcctgacca
atgagcctctctttccagtgatgggccgactaggccatctttgatacata
tgcagctagagtccagagctctgggtactgttagttcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43346186_43347151
seq2: B6Ng01-233D06.b_45_1011

seq1  GAATTCAGTTTCTTTTCTCTTGTAAGATTCCAATTATAAATGCATTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTTTTCTCTTGTAAGATTCCAATTATAAATGCATTCCTT  50

seq1  CACTGTTCTTGCCTCTTACTCTTTTTCTTTTTCTTTTTTTCTGTGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCTTGCCTCTTACTCTTTTTCTTTTTCTTTTTTTCTGTGATTCT  100

seq1  GTCATTTTAACATAATAATAAGCTATGGTGTTTGTTCACTTTCTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTAACATAATAATAAGCTATGGTGTTTGTTCACTTTCTTTTTCT  150

seq1  TTTTCCACATTGAGTTGGTAACTGTGTGGGATGGGCACTGGAGATGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACATTGAGTTGGTAACTGTGTGGGATGGGCACTGGAGATGTGAT  200

seq1  AAGGTAGCTTTCCTGGCCTTACTGTGTCCTCCTCCCTTTGTTGCTGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCTTTCCTGGCCTTACTGTGTCCTCCTCCCTTTGTTGCTGAGAT  250

seq1  CTCCGTTATAACCGCTGGGTGTCTGGTCTTTGTGCCAGTTAAGCCTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTATAACCGCTGGGTGTCTGGTCTTTGTGCCAGTTAAGCCTGACT  300

seq1  TGGTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  350

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTATTAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTATTAGAAA  400

seq1  AAAATTTATTTTATTTTTTTTATTAGATATTTTCTTCATTTATGTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATTTTATTTTTTTTATTAGATATTTTCTTCATTTATGTTTCAA  450

seq1  ATGCTATCCCCTTTCCTAGTTTTCTCTCCTTAAGTCCCCTATACCCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCCCTTTCCTAGTTTTCTCTCCTTAAGTCCCCTATACCCTCCC  500

seq1  CCCGCCCTGCTCCTTAACCCACCCACTCCTGCTTCCTGGCCCTTACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCTGCTCCTTAACCCACCCACTCCTGCTTCCTGGCCCTTACATTC  550

seq1  CTCTGTACTGGGGCATATAATCTTCACAAGGCCAAGGGCCTCTCCTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACTGGGGCATATAATCTTCACAAGGCCAAGGGCCTCTCCTCCCA  600

seq1  ATGATGGCCGACTAGGATTTTCTGATTCTGGTCTTCAGTTACACCTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCCGACTAGGATTTTCTGATTCTGGTCTTCAGTTACACCTCACA  650

seq1  GAGTTCTGTAGGCGTGGAGTCCTCTGAGCCTGTGGTGTCCACTCTGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGTAGGCGTGGAGTCCTCTGAGCCTGTGGTGTCCACTCTGCTGT  700

seq1  TAGCTCCTCCTCAGCTTCCTTAGATCATTTCTTCCTCCTGTTCCATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTCCTCAGCTTCCTTAGATCATTTCTTCCTCCTGTTCCATGTTT  750

seq1  CTGTCCTATGCAATTTGGTTTCGGATGTTAGTATTTTTCTTCATACTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTATGCAATTTGGTTTCGGATGTTAGTATTTTTCTTCATACTTTG  800

seq1  AAGGATTTATGCTTCAAGAAACAGAAGTAATTGGCTGCTAGTTTGAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTATGCTTCAAGAAACAGAAGTAATTGGCTGCTAGTTTGAGATC  850

seq1  TTATATATAGTTCAATTTGTTTAATCATGTTTACATACAGTTTTCAAATG  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTATATATAGTTCAATTTGTTTAATCATG-TTACATACAGTTTTCAAATG  899

seq1  TGCCTGTAATTTGAAGGCTGGGAAGATACTTACCGAGGTTGTGTGT--TT  948
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TGCCTGTAATTTGAAGGCTGGGAAGATACTTACCGAGGTTGTGTGTTGTT  949

seq1  GTTTGTTTGTTTGTTTGT  966
      ||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGT  967


seq1: chr15_43479006_43479995
seq2: B6Ng01-233D06.g_65_1054 (reverse)

seq1  TATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATC  50
      |||||||||| ||||| ||||||||||| |||||||||||||||||||||
seq2  TATGAACTAA-CAGTA-CCCAGAGCTCTGGACTCTAGCTGCATATGTATC  48

seq1  AAAAGATGGCCTAGTCGG-CCATCACTGGAAAGAGAGGCTCATTGGTCAG  99
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  -AAAGATGGCCTAGTCGGCCCATCACTGGAAAGAGAGGCTCATTGGTCAG  97

seq1  GCAAACG-TTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAATGG  148
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACGTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAATGG  147

seq1  GAATGGGTGGGTAGGGGAGT-GGGGGGGGGGGGGGCTTTTGGGATAGCAT  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATGGGTGGGTAGGGGAGTGGGGGGGGGGGGGGGCTTTTGGGATAGCAT  197

seq1  TGGAAATGTAATTGAAGAAAATATGTAATTAAAAAAAAAAGAAAAAAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTAATTGAAGAAAATATGTAATTAAAAAAAAAAGAAAAAAAAA  247

seq1  ACAAAAAACAAACCAAAACAAAAAAAAGCCCTTTCTCTTTCCCTGCATCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAAACCAAAACAAAAAAAAGCCCTTTCTCTTTCCCTGCATCT  297

seq1  CCTTTCCCTCCTGGGACCTGGAAGTCCCACTTGTCCCTTCCTCCCAGCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTCCTGGGACCTGGAAGTCCCACTTGTCCCTTCCTCCCAGCCA  347

seq1  TTGTCTCCTGGTCTCAGCCTCCTTTACTGACCAAATCCAGAACCAATTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCTGGTCTCAGCCTCCTTTACTGACCAAATCCAGAACCAATTAG  397

seq1  GGAACCAGACTTTAGTATTAGCACCTCCTCCTACAGGAGAGCACATAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGACTTTAGTATTAGCACCTCCTCCTACAGGAGAGCACATAACT  447

seq1  CTTTTTTTCCCATAACATCTCTGTTTCCATCTAGCTTCTAATAACTAATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCCCATAACATCTCTGTTTCCATCTAGCTTCTAATAACTAATA  497

seq1  AATATATCAAATAATGATTATCTTTCTGCCAGTGAGCTAACTTGTCATTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCAAATAATGATTATCTTTCTGCCAGTGAGCTAACTTGTCATTC  547

seq1  ATTATCAGAAAGGCGTATCTTCAAATATTTGCATATGATTGTTCCGTACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGAAAGGCGTATCTTCAAATATTTGCATATGATTGTTCCGTACA  597

seq1  TTTTTCAGCATTGATTTTTTTATATCCTTTGAGCTCGTATTATTTTTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGCATTGATTTTTTTATATCCTTTGAGCTCGTATTATTTTTGTG  647

seq1  TTAAATAAGGTAGTATTGAAGATTGGCCAAATTTTCTGAACAGTGGAATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGGTAGTATTGAAGATTGGCCAAATTTTCTGAACAGTGGAATA  697

seq1  TACTTAACAGTATTATGGCTCATAAAGTAATGAAATAATTAAAAATGGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAACAGTATTATGGCTCATAAAGTAATGAAATAATTAAAAATGGTA  747

seq1  CTTAATACCATTACATAAAGCATCATAAGTTTCACAAATAGTGACTATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACCATTACATAAAGCATCATAAGTTTCACAAATAGTGACTATTT  797

seq1  TTGAAGCAAATATAAGTAGTAAAATAATTAGTCTTATTTTCCAGATAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAAATATAAGTAGTAAAATAATTAGTCTTATTTTCCAGATAAAT  847

seq1  AAATGAGTCTAGTTGGCTTGCCAAATGCATGTAGCTAACCAGTTTTAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTCTAGTTGGCTTGCCAAATGCATGTAGCTAACCAGTTTTAGAT  897

seq1  ATGGATAAAGTTCTGTTATCTCATGCTCATTATCAAATCTGGAATATTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAAAGTTCTGTTATCTCATGCTCATTATCAAATCTGGAATATTGT  947

seq1  AACAGATCAGGACTTTTGCAGAAATGATATGAGATGAGAATTC  990
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCAGGACTTTTGCAGAAATGATATGAGATGAGAATTC  990


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