BAC Information

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BAC

Clone NameB6Ng01-236M16
Chromosome15 (Build37)
Map Location 92,857,603 - 92,950,467
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042529, Cntn1, Pdzrn4, LOC100042552
Downstream geneLOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236M16.bB6Ng01-236M16.g
ACCGA047924GA047925
length1,159991
definitionB6Ng01-236M16.b B6Ng01-236M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,857,603 - 92,858,775)(92,949,480 - 92,950,467)
sequence
gaattcatttaagtaaaggtacttttttaaaatgtatgcacacatagctc
ctagagaaaataacgcacaagcagaagtttgctaaacttagaagtgaata
ataggcatggaaaacggacaattaggctgcatccctttaagaactctccc
ttcgcagaaacaatagatcattgtcattgccccatgactctgggaatgga
acgcctgggttggcctaggcagattgtggttggtcgccacacatcaggaa
gctctctacctctccctcagagatgtgacaccacagcccagtggtcttcc
acacttgttcctctccaagactacttcttcagcaaactgcagctcagcaa
ctcttgcttcaagtttccttttctttccgttttctttctcttttttcttt
ttttttgtttgtttgttttctttttgtttgtaagagtgtctcacaatata
acacatgtgtcctgtggtcttacgggctagcctcctactctcaatccttt
ctctctctttagtactgggattacaagagagcaccatcacgccagactta
ttttgctatctgtctgtctgtttaaaataagttaaccaggaatgatcaat
taaacacgctgcctccctcaggatgtgttgttgctaaacccccaagttca
gcaaagctaatgttttcctcacttgggaaaacatttgcaggtgtgagtac
gagacttacagcatccttgatgatacagttgggtcaaaccctgtaaccac
aggactcttacagaacaaaagcagaggaagaagcaccccccaaacaggag
gtggcagagaacagcagcatccacctctggagactgagcctgggtgtcgt
tccatcatgttttccagaaagaacaagcccaccaacacttttactttaac
ccagtcaagggatgccatatctccaaactttgagagcatctgtattgttt
taaactactagaatttatcctaactgcttatagcaacaggaaactaacat
acaggatagtgatattttattatctcacatatgcaaaactcttaaaccta
aataggaagtatttttttaagctctagtgttctattcatcggaagcctat
aatatacctgactttgttattaacctatatccggattcagcctattagag
gtcatcgat

gaattcttcccagtgagcgagggacaagcaaggggcagccaatatatttc
ccccagaactggaggtacagtttgtgaggtacaccatgacatgggaatgc
cgagctctctcattcagaaatgaggaagtgtgtcaagctagcccttgatc
ttccccagtgcaatctgtacagatagacgcacaggtcgcacacctgttgg
cagctccattaatcatgtcccttgtcccaaggcctgttctaggtgacaga
ctcatttcattatcctgacagcattgtaggagagatagcatcagttaccg
ccccccccccccgcccccatcctcggttccttttgattgtgggttccatt
ttctcaatggttcaaaaagtacttgctaggtcttgggtatgaagttttgt
atattttcaaaaatgataactggacatttgggtgtgaatagggaccgagg
taggtggcagagttgtccgggagaatgctggctgctcctgctcccatgtc
acctcggacaggctccagagctgagggaggggggatgggtgacaggattg
gtccatcgcagtccatggcagtttccagaatgagctttcttatgcccctc
agccccagcccctagctttaggcgagagctctgactggctgaaggtcccc
ggggttcccagaatgcacccacggagaagacacacacacaatgactttgg
cttcttttggtctcagctcagagaagctgttcacagtctagtcagctttc
tgttactgtcacctggtcccctactctcctagtttgctctctatttgtgt
ggcaaacaccgtgaccaaagccaattgaggaggaaatggtttatttagtc
ttacaacgcacagtccactgtgaagggacgtcatggggaggatctcaaca
cagacacttcagaggaaggacctgaagcagaggtcatggaggacaccgct
ttactgattgtgccccaatgccctgttcagcctgctttgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92857603_92858775
seq2: B6Ng01-236M16.b_48_1206

seq1  GAATTCATTTAAGTAAAGGTACTTTTTTAAAATGTATGCACACATAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAAGTAAAGGTACTTTTTTAAAATGTATGCACACATAGCTC  50

seq1  CTAGAGAAAATAACGCACAAGCAGAAGTTTGCTAAACTTAGAAGTGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAATAACGCACAAGCAGAAGTTTGCTAAACTTAGAAGTGAATA  100

seq1  ATAGGCATGGAAAACGGACAATTAGGCTGCATCCCTTTAAGAACTCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATGGAAAACGGACAATTAGGCTGCATCCCTTTAAGAACTCTCCC  150

seq1  TTCGCAGAAACAATAGATCATTGTCATTGCCCCATGACTCTGGGAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCAGAAACAATAGATCATTGTCATTGCCCCATGACTCTGGGAATGGA  200

seq1  ACGCCTGGGTTGGCCTAGGCAGATTGTGGTTGGTCGCCACACATCAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGGGTTGGCCTAGGCAGATTGTGGTTGGTCGCCACACATCAGGAA  250

seq1  GCTCTCTACCTCTCCCTCAGAGATGTGACACCACAGCCCAGTGGTCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTACCTCTCCCTCAGAGATGTGACACCACAGCCCAGTGGTCTTCC  300

seq1  ACACTTGTTCCTCTCCAAGACTACTTCTTCAGCAAACTGCAGCTCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTTCCTCTCCAAGACTACTTCTTCAGCAAACTGCAGCTCAGCAA  350

seq1  CTCTTGCTTCAAGTTTCCTTTTCTTTCCGTTTTCTTTCTCTTTTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTTCAAGTTTCCTTTTCTTTCCGTTTTCTTTCTCTTTTTTCTTT  400

seq1  TTTTTTGTTTGTTTGTTTTCTTTTTGTTTGTAAGAGTGTCTCACAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTGTTTGTTTTCTTTTTGTTTGTAAGAGTGTCTCACAATATA  450

seq1  ACACATGTGTCCTGTGGTCTTACGGGCTAGCCTCCTACTCTCAATCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGTCCTGTGGTCTTACGGGCTAGCCTCCTACTCTCAATCCTTT  500

seq1  CTCTCTCTTTAGTACTGGGATTACAAGAGAGCACCATCACGCCAGACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTTAGTACTGGGATTACAAGAGAGCACCATCACGCCAGACTTA  550

seq1  TTTTGCTATCTGTCTGTCTGTTTAAAATAAGTTAACCAGGAATGATCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATCTGTCTGTCTGTTTAAAATAAGTTAACCAGGAATGATCAAT  600

seq1  TAAACACGCTGCCTCCCTCAGGATGTGTTGTTGCTAAACCCCCAAGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACGCTGCCTCCCTCAGGATGTGTTGTTGCTAAACCCCCAAGTTCA  650

seq1  GCAAAGCTAATGTTTTCCTCACTTGGGAAAACATTTGCAGGTGTGAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTAATGTTTTCCTCACTTGGGAAAACATTTGCAGGTGTGAGTAC  700

seq1  GAGACTTACAGCATCCTTGATGATACAGTTGGGTCAAACCCTGTAACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTACAGCATCCTTGATGATACAGTTGGGTCAAACCCTGTAACCAC  750

seq1  AGGACTCTTACAGAACAAAAGCAGAGGAAGAAGCACCCCCCAAACAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTTACAGAACAAAAGCAGAGGAAGAAGCACCCCCCAAACAGGAG  800

seq1  GTGGCAGAGAACAGCAGCATCCACCTCTGGAGACTGAGCCTGGGTGTCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAGAACAGCAGCATCCACCTCTGGAGACTGAGCCTGGGTGTCGT  850

seq1  TCCATCATGTTTTCCAGAAAGAACAAGCCCACCAACACTTTTACTTTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATGTTTTCCAGAAAGAACAAGCCCACCAACACTTTTACTTTAAC  900

seq1  CCAGTCAAGGGATGCCATATCTCCAAACTTTGAGAGCATCTGTATTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAAGGGATGCCATATCTCCAAACTTTGAGAGCATCTGTATTGTTT  950

seq1  TAAACTACTAG-ATTTATCCTAACTGCTTATAGCAACAGGAAACTAACAT  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACTAGAATTTATCCTAACTGCTTATAGCAACAGGAAACTAACAT  1000

seq1  ACAGGATAGTGAATATTTTATTATCTCACAATATTGCAAAAACTCTTAAA  1049
      ||||||||||| ||||||||||||||||| ||| ||| ||||||||||||
seq2  ACAGGATAGTG-ATATTTTATTATCTCAC-ATA-TGC-AAAACTCTTAAA  1046

seq1  ACCCTTAAAATTAGGAAGGTATTTTTTTTAAGCTCTAGTGTTCTATTCAA  1099
        |||   || |||||| ||| |||||||||||||||||||||||||| |
seq2  --CCT---AAATAGGAA-GTA-TTTTTTTAAGCTCTAGTGTTCTATTC-A  1088

seq1  TCGGAAAGCTTATAAATATA-CTGACTTTG-TATTAAACTATAATCCCGA  1147
      |||| |||| ||| |||||| ||||||||| |||||| |||| |||| ||
seq2  TCGG-AAGCCTAT-AATATACCTGACTTTGTTATTAACCTAT-ATCCGGA  1135

seq1  TTTCAAAGCTATAGAAGGTCATCGAT  1173
      ||   |  ||||   |||||||||||
seq2  TT--CAGCCTATTAGAGGTCATCGAT  1159


seq1: chr15_92949480_92950467
seq2: B6Ng01-236M16.g_65_1055 (reverse)

seq1  TACAAAGCAGGCTGAACAGGGCATTGGGGCAC-ATCAGT-AAGCGGTGCT  48
      |||||||||||||||||||||||||||||||| |||||| |||||||| |
seq2  TACAAAGCAGGCTGAACAGGGCATTGGGGCACAATCAGTAAAGCGGTG-T  49

seq1  CCTCCATGACCTCTGCTTCAGGTCCTTCCTCTG-AGTGTCTGTGTTGAGT  97
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CCTCCATGACCTCTGCTTCAGGTCCTTCCTCTGAAGTGTCTGTGTTGAGA  99

seq1  TCCTCCCC-TGACGTCCCTTCACAGTGGACTGTGCGTTGTAAGACTAAAT  146
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCATGACGTCCCTTCACAGTGGACTGTGCGTTGTAAGACTAAAT  149

seq1  AAACCATTTCCTCCTCAATTGGCTTTTGGTCACGGTGTTTGCCACACAAA  196
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACCATTTCCTCCTCAATTGGC-TTTGGTCACGGTGTTTGCCACACAAA  198

seq1  TAGAGAGCAAACTAGGAGAGTAGGGGACCAGGTGACAGTAACAGAAAGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCAAACTAGGAGAGTAGGGGACCAGGTGACAGTAACAGAAAGCT  248

seq1  GACTAGACTGTGAACAGCTTCTCTGAGCTGAGACCAAAAGAAGCC-AAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GACTAGACTGTGAACAGCTTCTCTGAGCTGAGACCAAAAGAAGCCAAAGT  298

seq1  CATTGTGTGTGTGTCTTCTCCGTGGGTGCATTCTGGGAACCCCGGGGACC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTGTGTGTCTTCTCCGTGGGTGCATTCTGGGAACCCCGGGGACC  348

seq1  TTCAGCCAGTCAGAGCTCTCGCCTAAAGCTAGGGGCTGGGGCTGAGGGGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCAGTCAGAGCTCTCGCCTAAAGCTAGGGGCTGGGGCTGAGGGGC  398

seq1  ATAAG-AAGCTCATTCTGGAAACTGCCATGGACTGCGATGGACCAATCCT  444
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGCTCATTCTGGAAACTGCCATGGACTGCGATGGACCAATCCT  448

seq1  GTCACCCATCCCCCCTCCCTCAGCTCTGGAGCCTGTCCGAGGTGACATGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCATCCCCCCTCCCTCAGCTCTGGAGCCTGTCCGAGGTGACATGG  498

seq1  GAGCAGGAGCAGCCAGCATTCTCCCGGACAACTCTGCCACCTACCTCGGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAGCAGCCAGCATTCTCCCGGACAACTCTGCCACCTACCTCGGT  548

seq1  CCCTATTCACACCCAAATGTCCAGTTATCATTTTTGAAAATATACAAAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTCACACCCAAATGTCCAGTTATCATTTTTGAAAATATACAAAAC  598

seq1  TTCATACCCAAGACCTAGCAAGTACTTTTTGAACCATTGAGAAAATGGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACCCAAGACCTAGCAAGTACTTTTTGAACCATTGAGAAAATGGAA  648

seq1  CCCACAATCAAAAGGAACCGAGGATGGGGGCGGGGGGGGGGGGGCGGTAA  694
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCACAATCAAAAGGAACCGAGGATGGGGGC-GGGGGGGGGGGGCGGTAA  697

seq1  CTGATGCTATCTCTCCTACAATGCTGTCAGGATAATGAAATGAGTCTGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTATCTCTCCTACAATGCTGTCAGGATAATGAAATGAGTCTGTC  747

seq1  ACCTAGAACAGGCCTTGGGACAAGGGACATGATTAATGGAGCTGCCAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAACAGGCCTTGGGACAAGGGACATGATTAATGGAGCTGCCAACA  797

seq1  GGTGTGCGACCTGTGCGTCTATCTGTACAGATTGCACTGGGGAAGATCAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCGACCTGTGCGTCTATCTGTACAGATTGCACTGGGGAAGATCAA  847

seq1  GGGCTAGCTTGACACACTTCCTCATTTCTGAATGAGAGAGCTCGGCATTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGCTTGACACACTTCCTCATTTCTGAATGAGAGAGCTCGGCATTC  897

seq1  CCATGTCATGGTGTACCTCACAAACTGTACCTCCAGTTCTGGGGGAAATA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCATGGTGTACCTCACAAACTGTACCTCCAGTTCTGGGGGAAATA  947

seq1  TATTGGCTGCCCCTTGCTTGTCCCTCGCTCACTGGGAAGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTGCCCCTTGCTTGTCCCTCGCTCACTGGGAAGAATTC  991


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