BAC Information

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BAC

Clone NameB6Ng01-239A16
Chromosome15 (Build37)
Map Location 89,949,178 - 90,117,843
singlet/doubletdoublet
Overlap geneAlg10b
Upstream geneHdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
Downstream geneCpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239A16.bB6Ng01-239A16.g
ACCGA049574GA049575
length982771
definitionB6Ng01-239A16.b B6Ng01-239A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,117,176 - 90,117,843)(89,949,178 - 89,949,940)
sequence
gaattctttacagcttaatacaataatgaataaaaatttatttttaaata
aaataaccactgaaaataacaaacacaagaatttgttttagatttgatta
ctaatcttttgaaataatattcagagaaagaaataagaacaaaaaagagg
ttataagtatatgggaactaattaaggggggaaatgagttataggagtca
caaggaagaatacatggagagagaaacatgaatcctattaatgaaatcat
aagtgaagacttccaagttctagagaaaaggatgacatactgtttgatca
acgctgacttgattcatctccaaaagttcttctctaggccacaatatatt
taacagaaactattcaggctaggaaagggataaaatgtatccacagtatc
taaatacatacatacatatatacatacatacatacatgcatgcatgcata
catacatatgtagagccagccaaaaatgctaaaacataaagtttgtttgt
ggttttgttttgttttgtcttctgtcaggaaaaaaaaccacacacacacc
tgaaaggaatcattacctttaggccagtctcacaggaaatactcaatgaa
gtcttaaaaccagaagacaaaaacctaaaaaacaaaacaaaacaaaacaa
aacaaaacaaaacaaacaaatctaaaaaccctgccacgacgaaagcctga
tgaagcagatacttcataagatgcttgacaaagacaaaaaaagggaatca
aagtttgtcaacatagagaagtttaaaactataaatatagacaggaagaa
acaaagaaaggaaaaccagatatgcaaaccaacccggaaaaaattaaaat
ggatacggtagattatagcttataataatcttgaatgtaaattaattaaa
atttcaaatagaaggatatgaacttgttgaacaaaatttttaaaagtctt
aactaaatagtgtttgcaggaataacattatg
tttggaggaaacaccacactaaatctcacaatagttgcaccaatttgcat
tcctagcagcagtaagtgtcctcctttccccatacccacaccagaattgg
ccatcattagttattatttttttaatcttagaaattctgattaaaggaaa
ggtgaaatattaaaaagtatagatctgcatttccctgatagcaaagaatg
tggatcttttaaatgtttgttgttgttgttatacctggatatttatttat
aaatcttataaacccatttagcattttttaagaaatgggagagcaggcac
cttcggaggctccatagcctttgcttaggtggggttttggtttgtttgtt
tgttttgtttgtttgttgtttgtgtttggaggccttagcagcagccattg
ctgtcttctctgatgcctatgtggtctttcttacttctgtggcagccctg
ataggtctgttctccctgagcatgtctgccctctgatctctgactcctga
tggctattacaaagcagcaggagatgcaccagtgatggccagcttgaact
tgactgtgtggcaggaatcttttctcttgactttcttccacctgtccctt
tttgtgtgctttcttccatagaggatagctccatatatctgccaagggtt
ttcttttgggtaaagaacatggtctagcatttttcatttaagaaactgga
aaactttggcagcgcatcctggctcaacactgttggtggtgttaagagcg
ggtgtggggtcagtgaaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_90117176_90117843
seq2: B6Ng01-239A16.b_47_714 (reverse)

seq1  TGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTAGGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTAGGTTTTT  50

seq1  GTCTTCTGGTTTTAAGACTTCATTGAGTATTTCCTGTGAGACTGGCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGGTTTTAAGACTTCATTGAGTATTTCCTGTGAGACTGGCCTAA  100

seq1  AGGTAATGATTCCTTTCAGGTGTGTGTGTGGTTTTTTTTCCTGACAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATGATTCCTTTCAGGTGTGTGTGTGGTTTTTTTTCCTGACAGAAG  150

seq1  ACAAAACAAAACAAAACCACAAACAAACTTTATGTTTTAGCATTTTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACAAAACCACAAACAAACTTTATGTTTTAGCATTTTTGGC  200

seq1  TGGCTCTACATATGTATGTATGCATGCATGCATGTATGTATGTATGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTACATATGTATGTATGCATGCATGCATGTATGTATGTATGTATA  250

seq1  TATGTATGTATGTATTTAGATACTGTGGATACATTTTATCCCTTTCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATGTATTTAGATACTGTGGATACATTTTATCCCTTTCCTAG  300

seq1  CCTGAATAGTTTCTGTTAAATATATTGTGGCCTAGAGAAGAACTTTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATAGTTTCTGTTAAATATATTGTGGCCTAGAGAAGAACTTTTGGA  350

seq1  GATGAATCAAGTCAGCGTTGATCAAACAGTATGTCATCCTTTTCTCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCAAGTCAGCGTTGATCAAACAGTATGTCATCCTTTTCTCTAGA  400

seq1  ACTTGGAAGTCTTCACTTATGATTTCATTAATAGGATTCATGTTTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAGTCTTCACTTATGATTTCATTAATAGGATTCATGTTTCTCTC  450

seq1  TCCATGTATTCTTCCTTGTGACTCCTATAACTCATTTCCCCCCTTAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTATTCTTCCTTGTGACTCCTATAACTCATTTCCCCCCTTAATTA  500

seq1  GTTCCCATATACTTATAACCTCTTTTTTGTTCTTATTTCTTTCTCTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATATACTTATAACCTCTTTTTTGTTCTTATTTCTTTCTCTGAAT  550

seq1  ATTATTTCAAAAGATTAGTAATCAAATCTAAAACAAATTCTTGTGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCAAAAGATTAGTAATCAAATCTAAAACAAATTCTTGTGTTTGT  600

seq1  TATTTTCAGTGGTTATTTTATTTAAAAATAAATTTTTATTCATTATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGTGGTTATTTTATTTAAAAATAAATTTTTATTCATTATTGTA  650

seq1  TTAAGCTGTAAAGAATTC  668
      ||||||||||||||||||
seq2  TTAAGCTGTAAAGAATTC  668

seq1: chr15_89949178_89949940
seq2: B6Ng01-239A16.g_76_845

seq1  TTTGGAGGAAACACCACACTAAATCTCACAATAGTTGCACCAATTTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGAAACACCACACTAAATCTCACAATAGTTGCACCAATTTGCAT  50

seq1  TCCTAGCAGCAGTAAGTGTCCTCCTTTCCCCATACCCACACCAGAATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAGCAGTAAGTGTCCTCCTTTCCCCATACCCACACCAGAATTGG  100

seq1  CCATCATTAGTTATTATTTTTTTAATCTTAGAAATTCTGATTAAAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTAGTTATTATTTTTTTAATCTTAGAAATTCTGATTAAAGGAAA  150

seq1  GGTGAAATATTAAAAAGTATAGATCTGCATTTCCCTGATAGCAAAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATATTAAAAAGTATAGATCTGCATTTCCCTGATAGCAAAGAATG  200

seq1  TGGATCTTTTAAATGTTTGTTGTTGTTGTTATACCTGGATATTTATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTTTAAATGTTTGTTGTTGTTGTTATACCTGGATATTTATTTAT  250

seq1  AAATCTTATAAACCCATTTAGCATTTTTTAAGAAATGGGAGAGCAGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTATAAACCCATTTAGCATTTTTTAAGAAATGGGAGAGCAGGCAC  300

seq1  CTTCGGAGGCTCCATAGCCTTTGCTTAGGTGGGGTTTTGGTTTGTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGAGGCTCCATAGCCTTTGCTTAGGTGGGGTTTTGGTTTGTTTGTT  350

seq1  TGTTTTGTTTGTTTGTTGTTTGTGTTTGGAGGCCTTAGCAGCAGCCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTGTTTGTTGTTTGTGTTTGGAGGCCTTAGCAGCAGCCATTG  400

seq1  CTGTCTTCTCTGATGCCTATGTGGTCTTTCTTACTTCTGTGGCAGCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTCTGATGCCTATGTGGTCTTTCTTACTTCTGTGGCAGCCCTG  450

seq1  ATAGGTCTGTTCTCCCTGAGCATGTCTGCCCTCTGATCTCTGACTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCTGTTCTCCCTGAGCATGTCTGCCCTCTGATCTCTGACTCCTGA  500

seq1  TGGCTATTACAAAGCAGCAGGAGATGCACCAGTGATGGCCAGCTTGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATTACAAAGCAGCAGGAGATGCACCAGTGATGGCCAGCTTGAACT  550

seq1  TGACTGTGTGGCAGGAATCTTTTCTCTTGACTTTCTTCCACCTGTCCC-T  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGACTGTGTGGCAGGAATCTTTTCTCTTGACTTTCTTCCACCTGTCCCTT  600

seq1  TTTGTGTGCTTTCTTCCATAGAGGATAGCTCCATATATCTGCCAAGGG-T  648
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGTGTGCTTTCTTCCATAGAGGATAGCTCCATATATCTGCCAAGGGTT  650

seq1  TTCTTTTGGGT-AAGAACATGGTCTAGCATTTTTCATTTAAG-AACTGGA  696
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  TTCTTTTGGGTAAAGAACATGGTCTAGCATTTTTCATTTAAGAAACTGGA  700

seq1  AAACTTT-GCAGCGCATCCTGGCTCAACACTGTTGGT-GTGTTAAGAGC-  743
      ||||||| ||||||||||||||||||||||||||||| ||||||||||| 
seq2  AAACTTTGGCAGCGCATCCTGGCTCAACACTGTTGGTGGTGTTAAGAGCG  750

seq1  GGTGTGGGTTCAGTGAAACT  763
      |||||||| |||||||||||
seq2  GGTGTGGGGTCAGTGAAACT  770