BAC Information

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BAC

Clone NameB6Ng01-239C20
Chromosome15 (Build37)
Map Location 82,134,836 - 82,135,904
singlet/doubletsinglet
Overlap geneWbp2nl
Upstream geneSlc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3
Downstream geneNaga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239C20.bB6Ng01-239C20.g
ACCGA049672GA049673
length1,2121,093
definitionB6Ng01-239C20.b B6Ng01-239C20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttatatatattggatattagtcccctatccaatttgggatagg
taaagatcctttgtcaatctgttggtggtctttttgtcttattgacggtg
tcttttgccttgcagaagctttgcgattttatgaggtcccatttatcgat
tcacgatctaacggcacaagccattgctgttctattcaggaatttttccc
ctgtacccatatcttcgaggcttttccctactttctcctctataagtttc
agtgtctctggtccacttagatttgaccttagtacaaggagataggaatg
gatcaattggcattcttctacatgataaccaccagttgtgccagcaccat
ttgttgaaaatgctgtcttttttccactggatggttttagctcccttgtc
aaagatcaagtgaacataggtgtccgggttcatctctgggtcttcaattc
tgttccattggtctacttgtctgtcactataccagtaccatgcagttttt
atcacaattgctctgtagtacagctttaggtcaggcatgatgattccacc
agaggttcttttatccttgagaagagtttttgctatcctaggttttttat
tattccagatgaatctgccaattgccctttctaattcgttgaagaattga
gttggaattttgatggggattgcattgaatctgtagattgcttttggcaa
gatagccatttttactatattgatcctgccaatccatgagcatggaagat
ctttccatcttctgagatcttctttaatttctttcttcagagacttgaag
ttcttatcatacagatctttcacttccttacttagagtcacaccaaggta
ttttatattatttgtgactattgagaagggtgttgtttccctaatttctt
tctcagccctttttatcctttgtgtacagaaaggccattgacttgtttgg
agttaattttatatccagctactttcattgaagctgtttaccaggctagg
agttcttctgggtggaaattttagggtcacttatatatactatcatatca
tctgcaaaaagtgatattttgacttcttccctttccaatttgtatcccca
tgatctccgtttggtggttgactgcttctggctaggaacttcaagttacc
atgttggaatactaagtaaagaagatcgttaccagccctgtctctaaaga
ctcccctggaat
gaattctatgtatgtgtgtggagggtgtgtgtgctgtgagtgtttgaatt
ctatgtatatgtgtggagggtgtgtgctgtgagtgttgtggatgcgcatg
tgcctgtgcgtatgaagaatgcgattgtgaggtgtgcatttgtcctatat
agctctgctcactcccaaaactttactgtcagaagttacagtttcatata
ttatcactatcactataagtgtataattattgtcttaaacagacccttct
gctatatcactctagctagcacctcttcctcagtccacgctgaaaaatct
agagcttgctgtttctttttgccggtccagtgagtttcccaagctcagat
cccagacaacttcccaacttggtctcgctactcttcctaactcgactctt
gctgtggcttggttcacccgcatccctaatcttctcccaagcaggcaatc
tgctttccatgttctgcttctccatctctgttaatgccgttgatgccctg
tctggattgtccctgtagccttacctctgcctatttcaacactatctatg
tcttaagactcagctccagccacatcctttccatgggatctttcacaatc
atttccaccagaaataatccctcctgttaaatgcctgggacatttttgtg
ccatttatgtgacacatgtcttctatttcctgcatgatgctctgttcatg
tttccttttcctttccttttctttctttcttttcttttcttttcattttt
tctttttaaatacatgtttagtgcccttaccctttggcagagccacagca
gtgaaagcagcctgttgttgctgcttctaataagcatcagggaagcactg
aacaataaacttaaataataaattacattaattaataaataaagagaaaa
gaaaaagaaaaaaataaaaaactggaaaagctagatttctcaggaagtga
agaagagcatgaatccagttgtccctcaattcggagagaagctggactta
ctggtgccaaggttgtgcgaggcacctcgcttgctctttgctttctttta
accagctaaacatttctggaggagcccatgttccttccaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82134836_82135904
seq2: B6Ng01-239C20.g_64_1156

seq1  GAATTCTATGTATGTGTGTGGAGGGTGTGTGTGCTGTGAGTGTTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTATGTGTGTGGAGGGTGTGTGTGCTGTGAGTGTTTGAATT  50

seq1  CTATGTATATGTGTGGAGGGTGTGTGCTGTGAGTGTTGTGGATGCGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATATGTGTGGAGGGTGTGTGCTGTGAGTGTTGTGGATGCGCATG  100

seq1  TGCCTGTGCGTATGAAGAATGCGATTGTGAGGTGTGCATTTGTCCTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGCGTATGAAGAATGCGATTGTGAGGTGTGCATTTGTCCTATAT  150

seq1  AGCTCTGCTCACTCCCAAAACTTTACTGTCAGAAGTTACAGTTTCATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCTCACTCCCAAAACTTTACTGTCAGAAGTTACAGTTTCATATA  200

seq1  TTATCACTATCACTATAAGTGTATAATTATTGTCTTAAACAGACCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTATCACTATAAGTGTATAATTATTGTCTTAAACAGACCCTTCT  250

seq1  GCTATATCACTCTAGCTAGCACCTCTTCCTCAGTCCACGCTGAAAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATCACTCTAGCTAGCACCTCTTCCTCAGTCCACGCTGAAAAATCT  300

seq1  AGAGCTTGCTGTTTCTTTTTGCCGGTCCAGTGAGTTTCCCAAGCTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGCTGTTTCTTTTTGCCGGTCCAGTGAGTTTCCCAAGCTCAGAT  350

seq1  CCCAGACAACTTCCCAACTTGGTCTCGCTACTCTTCCTAACTCGACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACAACTTCCCAACTTGGTCTCGCTACTCTTCCTAACTCGACTCTT  400

seq1  GCTGTGGCTTGGTTCACCCGCATCCCTAATCTTCTCCCAAGCAGGCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCTTGGTTCACCCGCATCCCTAATCTTCTCCCAAGCAGGCAATC  450

seq1  TGCTTTCCATGTTCTGCTTCTCCATCTCTGTTAATGCCGTTGATGCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCATGTTCTGCTTCTCCATCTCTGTTAATGCCGTTGATGCCCTG  500

seq1  TCTGGATTGTCCCTGTAGCCTTACCTCTGCCTATTTCAACACTATCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTGTCCCTGTAGCCTTACCTCTGCCTATTTCAACACTATCTATG  550

seq1  TCTTAAGACTCAGCTCCAGCCACATCCTTTCCATGGGATCTTTCACAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGACTCAGCTCCAGCCACATCCTTTCCATGGGATCTTTCACAATC  600

seq1  ATTTCCACCAGAAATAATCCCTCCTGTTAAATGCCTGGGACATTTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACCAGAAATAATCCCTCCTGTTAAATGCCTGGGACATTTTTGTG  650

seq1  CCATTTATGTGACACATGTCTTCTATTTCCTGCATGATGCTCTGTTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATGTGACACATGTCTTCTATTTCCTGCATGATGCTCTGTTCATG  700

seq1  TTTCC-TTTCCTTTCCTTTTCTTTCTTTC-TTTCTTTTCTTTTCATTTTT  748
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCCTTTTCCTTTCCTTTTCTTTCTTTCTTTTCTTTTCTTTTCATTTTT  750

seq1  TCTTTTTAAATACATGTTTAGTG-CCTTACCCTTTGGCAGAGCCACAGCA  797
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTTTTTAAATACATGTTTAGTGCCCTTACCCTTTGGCAGAGCCACAGCA  800

seq1  GTG-AAGCAGCCTGTTGTTGCTGCTTCTAATAAGCATCAGGGAAGCACTG  846
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCAGCCTGTTGTTGCTGCTTCTAATAAGCATCAGGGAAGCACTG  850

seq1  AACAAATAAACTAAAATAAATAAATAAATAAATAAATAAAATAAAGAGAA  896
      ||| |||||||| ||||||  || || || ||| ||| ||||||||||||
seq2  AAC-AATAAACTTAAATAATAAATTACATTAATTAAT-AAATAAAGAGAA  898

seq1  AAGAAAAAGAAAAAAA-AAAAAACTGG-AAAGCTAGATT--CCAGG-AGT  941
      |||||||||||||||| |||||||||| |||||||||||   |||| |||
seq2  AAGAAAAAGAAAAAAATAAAAAACTGGAAAAGCTAGATTTCTCAGGAAGT  948

seq1  G-AGAAGAGCATGAATCCAGTTGTCC--CCATTCGGAGAGAAGCTGGAC-  987
      | ||||||||||||||||||||||||  | ||||||||||||||||||| 
seq2  GAAGAAGAGCATGAATCCAGTTGTCCCTCAATTCGGAGAGAAGCTGGACT  998

seq1  TACT-GTGCC-AGGGTGTGCGA-GCACC-CGCCTG--CCTTGCCTTCTTT  1031
      |||| ||||| ||| ||||||| ||||| ||| ||  | |||| ||||||
seq2  TACTGGTGCCAAGGTTGTGCGAGGCACCTCGCTTGCTCTTTGCTTTCTTT  1048

seq1  --ACCAGCTAAACA-TTCTG--AGAGCCCA-GTT-CTTCCCAGTT  1069
        |||||||||||| |||||   ||||||| ||| ||||| ||||
seq2  TAACCAGCTAAACATTTCTGGAGGAGCCCATGTTCCTTCCAAGTT  1093