BAC Information

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BAC

Clone NameB6Ng01-240N05
Chromosome15 (Build37)
Map Location 40,205,057 - 40,342,676
singlet/doubletdoublet
Overlap genenone
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240N05.bB6Ng01-240N05.g
ACCGA050894GA050895
length1,113410
definitionB6Ng01-240N05.b B6Ng01-240N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,341,557 - 40,342,676)(40,205,057 - 40,205,471)
sequence
gaattcaaaaagtgaaaagtagagaactgtcttgcaagctaagaacacga
gtttgatctctagaaagcttgggaaaatgccaggcttggtggtgtgccct
tactattgcaatgctaggacacagggacaggatatttgatacttcctggc
tggccagattggcctgattagtaagcccaaggccaaggagaggcactgct
tcaaatgaggtgactggtgttcctgagaataacactcaaaaatttcctcc
agtttccaaacacacatgcacacatgtccatgaacaccccacacacatgc
acacatacacacacacacacacacaaatatagcttatgcttaaaattaga
aataaaaagcacagtttataattattttgtgtacaaaaatatgtgagcat
atatgaagtttgttctgagacacagaaatggggtgatcttcataaaacac
ttggaagtaataagaaaaatgtaaacaaatatatgaactaattttgcata
ttgaataaatgtttgtcagtgtgataagataaaaattatattcttatatg
ccaggcataaaagaaattattaagcaatcaagaaatcaagaaacagagtg
ttggtgctggagaaatggctcatcatttatgaaatggagcactgttccat
gaagatgtgtgagagttgactgtagttagagtattctgaagttaaattcc
aaaaggctttgatcacaaaagtgaagagcagaggcctcattaaggtcaat
ttctagcagaaagatgtctcaacaataccaatgacttagcctatactttc
aaagtatagaacaaaatcagaaccaaattacacgtcatgtcacctctccc
cctaggcattgatttatctgcttatatagtcttcatttaatcgattaaga
taaaagtcatatataaacaaaatgtcaagatttgcattttccaatatata
attacacatctatttctgctgggacactgaatctcgaaaatagatgtgaa
atattctaagaaaactactagaataagtcaggtatttttatttttcctac
tcttcatattctgagtaaaaataatattattgaaaattttccaatgatgt
gtgagtgatgggg

tatgaatctgaactaatgttgttagcttgctgggcaagtgcttttaaaca
aagaactatcactttgatttcctggttttgtgtgtgtgttctttgttttg
ttttgtttttgtttgtttgtttggttggttggtttttgagataggatctc
acattgcccagcctggccttaaaggttgtagaaaaattctcctaactttg
acagcttaactgacagtcttcattcttctctaaatgtagctctgtgaaga
aaatgataaaactaagatcaccttttaacattgtctggcccctaagggag
tgaaaacttggacaagcctgctttatgatgtagaatacactggacatcac
caaatggaatcctcaatccaagagaggccttttgttttagaacaaaaagc
aaggtataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40341557_40342676
seq2: B6Ng01-240N05.b_46_1158 (reverse)

seq1  CCCCATCACCTCACCACATCAATTGGAAAATTTTTCAATAATTATATTTT  50
      |||||||| |||| |||||| ||||||||| |||||||||||  ||||||
seq2  CCCCATCA-CTCA-CACATC-ATTGGAAAA-TTTTCAATAATATTATTTT  46

seq1  TACCTCAGAATATGAAGAGTAAGGAAAATAAAATACCCTGACTTATTCTA  100
      || |||||||||||||||||| | |||||||||   ||||||||||||||
seq2  TA-CTCAGAATATGAAGAGTAGGAAAAATAAAAATACCTGACTTATTCTA  95

seq1  GTAGTTTTCTAGAAATATTTCACATCTTATTTTCGAGATTCAGTGTTCCA  150
      ||||||||||   ||||||||||||| ||||||||||||||||||| |||
seq2  GTAGTTTTCTTAGAATATTTCACATC-TATTTTCGAGATTCAGTGTCCCA  144

seq1  GCAGAAATAGATGTGTAATTATATATTGGAAAATGCAAATCTTGACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCAGAAATAGATGTGTAATTATATATTGGAAAATGCAAATCTTGACA-TT  193

seq1  TTGTTTATATATGACTTTTATCTTAATCGATTAAATGAAGACTATATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATATATGACTTTTATCTTAATCGATTAAATGAAGACTATATAAG  243

seq1  CAGATAAATCAATGCCTAGGGGGAGAGGTGACATGACGTGTAATTTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATCAATGCCTAGGGGGAGAGGTGACATGACGTGTAATTTGGTT  293

seq1  CTGATTTTGTTCTATACTTTGAAAGTATAGGCTAAGTCATTGGTATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTGTTCTATACTTTGAAAGTATAGGCTAAGTCATTGGTATTGTT  343

seq1  GAGACATCTTTCTGCTAGAAATTGACCTTAATGAGGCCTCTGCTCTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATCTTTCTGCTAGAAATTGACCTTAATGAGGCCTCTGCTCTTCAC  393

seq1  TTTTGTGATCAAAGCCTTTTGGAATTTAACTTCAGAATACTCTAACTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGATCAAAGCCTTTTGGAATTTAACTTCAGAATACTCTAACTACA  443

seq1  GTCAACTCTCACACATCTTCATGGAACAGTGCTCCATTTCATAAATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTCTCACACATCTTCATGGAACAGTGCTCCATTTCATAAATGATG  493

seq1  AGCCATTTCTCCAGCACCAACACTCTGTTTCTTGATTTCTTGATTGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTCTCCAGCACCAACACTCTGTTTCTTGATTTCTTGATTGCTTA  543

seq1  ATAATTTCTTTTATGCCTGGCATATAAGAATATAATTTTTATCTTATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTTTTATGCCTGGCATATAAGAATATAATTTTTATCTTATCAC  593

seq1  ACTGACAAACATTTATTCAATATGCAAAATTAGTTCATATATTTGTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAAACATTTATTCAATATGCAAAATTAGTTCATATATTTGTTTAC  643

seq1  ATTTTTCTTATTACTTCCAAGTGTTTTATGAAGATCACCCCATTTCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTATTACTTCCAAGTGTTTTATGAAGATCACCCCATTTCTGTG  693

seq1  TCTCAGAACAAACTTCATATATGCTCACATATTTTTGTACACAAAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAACAAACTTCATATATGCTCACATATTTTTGTACACAAAATAAT  743

seq1  TATAAACTGTGCTTTTTATTTCTAATTTTAAGCATAAGCTATATTTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTGTGCTTTTTATTTCTAATTTTAAGCATAAGCTATATTTGTGT  793

seq1  GTGTGTGTGTGTGTATGTGTGCATGTGTGTGGGGTGTTCATGGACATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATGTGTGCATGTGTGTGGGGTGTTCATGGACATGTG  843

seq1  TGCATGTGTGTTTGGAAACTGGAGGAAATTTTTGAGTGTTATTCTCAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGTTTGGAAACTGGAGGAAATTTTTGAGTGTTATTCTCAGGA  893

seq1  ACACCAGTCACCTCATTTGAAGCAGTGCCTCTCCTTGGCCTTGGGCTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTCACCTCATTTGAAGCAGTGCCTCTCCTTGGCCTTGGGCTTAC  943

seq1  TAATCAGGCCAATCTGGCCAGCCAGGAAGTATCAAATATCCTGTCCCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGGCCAATCTGGCCAGCCAGGAAGTATCAAATATCCTGTCCCTGT  993

seq1  GTCCTAGCATTGCAATAGTAAGGGCACACCACCAAGCCTGGCATTTTCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGCATTGCAATAGTAAGGGCACACCACCAAGCCTGGCATTTTCCC  1043

seq1  AAGCTTTCTAGAGATCAAACTCGTGTTCTTAGCTTGCAAGACAGTTCTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCTAGAGATCAAACTCGTGTTCTTAGCTTGCAAGACAGTTCTCT  1093

seq1  ACTTTTCACTTTTTGAATTC  1120
      ||||||||||||||||||||
seq2  ACTTTTCACTTTTTGAATTC  1113


seq1: chr15_40205057_40205471
seq2: B6Ng01-240N05.g_69_484

seq1  GAATTCTATGAATCTGAACTAATGTTGTTAGCTTGCTGGGCAAGTGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAATCTGAACTAATGTTGTTAGCTTGCTGGGCAAGTGCTTT  50

seq1  TAAACAAAGAACTATCACTTTGATTTCCTGGTTTTGTGTGTGTGTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAGAACTATCACTTTGATTTCCTGGTTTTGTGTGTGTGTTCTTT  100

seq1  GTTTTGTTTTGTTTTTGTTTGTTTGTTTGGTTGGTTGGTTTTTGAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTTGTTTGTTTGTTTGGTTGGTTGGTTTTTGAGATAG  150

seq1  GATCTCACATTGCCCAGCCTGGCCTTAAAGGTTGTAGAAAAATTCTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCACATTGCCCAGCCTGGCCTTAAAGGTTGTAGAAAAATTCTCCTA  200

seq1  ACTTTGACAGCTTAACTGACAGTCTTCATTCTTCTCTAAATGTAGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACAGCTTAACTGACAGTCTTCATTCTTCTCTAAATGTAGCTCTG  250

seq1  TGAAGAAAATGATAAAACTAAGATCACCTTTTAACATTGTCTGGCCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAATGATAAAACTAAGATCACCTTTTAACATTGTCTGGCCCCTA  300

seq1  AGGGAGTGAAAACTTGGACAAGCCTGCTTAGTGATGTAGAATACACTGGA  350
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  AGGGAGTGAAAACTTGGACAAGCCTGCTTTATGATGTAGAATACACTGGA  350

seq1  CATCACCAAATGGAATCCTCAATCCAAGAGAGGCC-TTGGTTTTAGAACA  399
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  CATCACCAAATGGAATCCTCAATCCAAGAGAGGCCTTTTGTTTTAGAACA  400

seq1  AAAAGCAAGGTATAAG  415
      ||||||||||||||||
seq2  AAAAGCAAGGTATAAG  416


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