BAC Information

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BAC

Clone NameB6Ng01-240O13
Chromosome15 (Build37)
Map Location 100,289,014 - 100,510,204
singlet/doubletdoublet
Overlap geneLetmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1
Upstream gene4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982
Downstream geneGalnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240O13.bB6Ng01-240O13.g
ACCGA050956GA050957
length1,109930
definitionB6Ng01-240O13.b B6Ng01-240O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,289,014 - 100,290,114)(100,509,286 - 100,510,204)
sequence
gaattcagttctgcacacttgcccaagaaacaaccaactaaataaacttg
ctagccttccattatctttaagcattctcagtgctttaacttattatttt
gtgtgcacggatgttttgtgtgtctgtgtagcgtgtgcatgcagggtctg
tggaggctgatagagggcgttgggttccatggaattggagttgcagacag
ctgtgagctgccatgtggttgctgggaactgaacttgggtcctctggaag
aacagccagtgttcctaacctctgagccatctctctaaaattatttgtta
ttgtgattgtgtttgtgtgtgtgtgcatataagtgcatggacactcggaa
gattaaagcagggaggtcatgagttcaaggctattccaggctatatagca
agttctagtccagcctgggctactcactgagaactgtcagggaaacaaag
gataggtcatggtggctcacacctatgattctagtacctgggggctgaga
taggaggattgccacctgtttgaagccaacctggacttcacctgtgttgc
aggcttatgaagctgcagagcgaaactttgtctaaaagcaaaacaagccg
gacgtggtggtgcatgcctttaatcccagcacttgggaggcagaggcagg
caaacttctgaattggaggccagcctggtctacagagtgaattccaggac
agccagggctacacagagaaaccctgtctcgaaaaactgaaaaaacaaac
aaacaaacaaaagcaaagcaaaacaaaacctcacaaattctaaccaaaaa
caccaaaattctggaaaaaaaaaaatgaaccaaaggagaaagtgaaatga
tttaggtaacaccagttctgtcccaacgtgggagtctgccgctcagcctt
gggtgagacattcaagtgaacccctagccttaactaagatactcaaggtg
aggcacttctctctcccgccccccagcagccttggcgacgattctgggac
tgtctcttgacatgacggtggttcaagcaaattatggtgtgctctggaag
aatactgcttgaactcttgcaagaaagctagctattaacaggggcactgc
aaagccctc
gaattcttcagggctgggtggaagagagaaaacatacccagacccaagaa
agggcggtaacaggcaataaggacttgcaaaacctgaggaagacccgcag
gtcatcccatagccgggggttttgatgaacgagctctgtggctactaagt
ggctaatctggttactgtcgtggcaaggatgtctgtagaaggtggggaca
gtcacacaagggcaggtaagggtaagaaggcatttgtcaggtacccttgg
atgaggggagaggtacataaaaatctggtgacattagaaacagaagtcac
agacaggtgggtctttaatggggaagaaaatccagggtaacaataggcag
agaagatttattggagggcgaagagggcagataatggatggaccatgatc
ctagtaaagaagggagagctggaagccagaggccagccagctggacacgg
ctttaactgggggtgggggacgatgggggtgttccctgaccgcgggcagg
tttgcaaactgggcagccgcaagttggcaggtgttctattttattgcttc
tggttactcatgaactaggaaatcaacttgactgcaaaaaaaaaggaaag
tgcaaaggttgtgcaagcgcggatagctacggtgaacaggaagggttcac
cctttcgagagggcgagcttggcatacgcttcactcacattttcctagga
taactaacatgaaccggaaagggttacccttcaagacagagagcttcgga
attcggctccactcactcttcccagggtaactcatgtgaacccagaaaat
gggttatcttttgagcccttcgagtttggcatatggcttcgctcacgcac
tcttcctaggataacttaagagatgtgaaccgcaaagggttctccttttg
agactgcgaacctgggccttggggtacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100289014_100290114
seq2: B6Ng01-240O13.b_44_1152

seq1  GAATTCAGTTCTGCACACTTGCCCAAGAAACAACCAACTAAATAAACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTGCACACTTGCCCAAGAAACAACCAACTAAATAAACTTG  50

seq1  CTAGCCTTCCATTATCTTTAAGCATTCTCAGTGCTTTAACTTATTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTCCATTATCTTTAAGCATTCTCAGTGCTTTAACTTATTATTTT  100

seq1  GTGTGCACGGATGTTTTGTGTGTCTGTGTAGCGTGTGCATGCAGGGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACGGATGTTTTGTGTGTCTGTGTAGCGTGTGCATGCAGGGTCTG  150

seq1  TGGAGGCTGATAGAGGGCGTTGGGTTCCATGGAATTGGAGTTGCAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTGATAGAGGGCGTTGGGTTCCATGGAATTGGAGTTGCAGACAG  200

seq1  CTGTGAGCTGCCATGTGGTTGCTGGGAACTGAACTTGGGTCCTCTGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCTGCCATGTGGTTGCTGGGAACTGAACTTGGGTCCTCTGGAAG  250

seq1  AACAGCCAGTGTTCCTAACCTCTGAGCCATCTCTCTAAAATTATTTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCAGTGTTCCTAACCTCTGAGCCATCTCTCTAAAATTATTTGTTA  300

seq1  TTGTGATTGTGTTTGTGTGTGTGTGCATATAAGTGCATGGACACTCGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTGTGTTTGTGTGTGTGTGCATATAAGTGCATGGACACTCGGAA  350

seq1  GATTAAAGCAGGGAGGTCATGAGTTCAAGGCTATTCCAGGCTATATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGCAGGGAGGTCATGAGTTCAAGGCTATTCCAGGCTATATAGCA  400

seq1  AGTTCTAGTCCAGCCTGGGCTACTCACTGAGAACTGTCAGGGAAACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGTCCAGCCTGGGCTACTCACTGAGAACTGTCAGGGAAACAAAG  450

seq1  GATAGGTCATGGTGGCTCACACCTATGATTCTAGTACCTGGGGGCTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTCATGGTGGCTCACACCTATGATTCTAGTACCTGGGGGCTGAGA  500

seq1  TAGGAGGATTGCCACCTGTTTGAAGCCAACCTGGACTTCACCTGTGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGATTGCCACCTGTTTGAAGCCAACCTGGACTTCACCTGTGTTGC  550

seq1  AGGCTTATGAAGCTGCAGAGCGAAACTTTGTCTAAAAGCAAAACAAGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATGAAGCTGCAGAGCGAAACTTTGTCTAAAAGCAAAACAAGCCG  600

seq1  GACGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  650

seq1  CAAACTTCTGAATTGGAGGCCAGCCTGGTCTACAGAGTGAATTCCAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCTGAATTGGAGGCCAGCCTGGTCTACAGAGTGAATTCCAGGAC  700

seq1  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACTGAAAAAACAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACTGAAAAAACAAAC  750

seq1  AAACAAACAAAAGCAAAGCAAAACAAAACCTCACAAATTCTAACCAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAAGCAAAGCAAAACAAAACCTCACAAATTCTAACCAAAAA  800

seq1  CACCAAAATTCTGGAAAAAAAAAAATGAACCAAAGGAGAAAGTGAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAATTCTGGAAAAAAAAAAATGAACCAAAGGAGAAAGTGAAATGA  850

seq1  TTTAGGTAACACCAGTTCTGTCCCAACGT-GGAGTCTGCCGCTCAGCCTT  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTAGGTAACACCAGTTCTGTCCCAACGTGGGAGTCTGCCGCTCAGCCTT  900

seq1  GGGTGAGACATTCAAGTGAACCCCTAGCCTTAGCTAAGATACTCAA-GTG  948
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  GGGTGAGACATTCAAGTGAACCCCTAGCCTTAACTAAGATACTCAAGGTG  950

seq1  AGGCACTTCTCTCTCCCGCCCCCCAGCAGCCTTGGCGACGATTCTGGGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTCTCTCTCCCGCCCCCCAGCAGCCTTGGCGACGATTCTGGGAC  1000

seq1  TGTCTC-TGACATTGACAGTGGTCCAAGCAAATTATGTGGTG-TCTGGAA  1046
      |||||| ||||| |||| ||||| |||||||||||||  ||| |||||||
seq2  TGTCTCTTGACA-TGACGGTGGTTCAAGCAAATTATGGTGTGCTCTGGAA  1049

seq1  G-ATACTGC-TGAGC-CTTGCAAAGAAAGC-AGCT-TTTACA-GGCCACT  1090
      | ||||||| ||| | ||||| |||||||| |||| || ||| || ||||
seq2  GAATACTGCTTGAACTCTTGC-AAGAAAGCTAGCTATTAACAGGGGCACT  1098

seq1  GCAAACCCCTC  1101
      ||||| |||||
seq2  GCAAAGCCCTC  1109

seq1: chr15_100509286_100510204
seq2: B6Ng01-240O13.g_67_996 (reverse)

seq1  AGTGTACCCCAAGG-CCAAGCTCGCAGTCTCAAAAGGAGAACCCTTTCCG  49
      |||||||||||||| ||| | |||||||||||||||||||||||||| ||
seq2  AGTGTACCCCAAGGCCCAGGTTCGCAGTCTCAAAAGGAGAACCCTTTGCG  50

seq1  GTTCACATCTCCTTAGTTATCCTAGGAAGAGTGCGTGAGCGAAG-CATAT  98
      ||||||||||| | |||||||||||||||||||||||||||||| |||||
seq2  GTTCACATCTCTTAAGTTATCCTAGGAAGAGTGCGTGAGCGAAGCCATAT  100

seq1  GCCAAACTCG-AGGGCTCAAAAGATAACC--ATTTCT-GGTTCACATGAG  144
      |||||||||| ||||||||||||||||||   ||||| ||||||||||||
seq2  GCCAAACTCGAAGGGCTCAAAAGATAACCCATTTTCTGGGTTCACATGAG  150

seq1  TTACCCTGGGAAGAGTGAGTGGAGCCG-ATTCCG-AGCTCTCTGTCTTGA  192
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  TTACCCTGGGAAGAGTGAGTGGAGCCGAATTCCGAAGCTCTCTGTCTTGA  200

seq1  AGGGTAACCCTTTCCGGTTCATGTTAGTTATCCTAGG-AAATGTGAGTGA  241
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGGTAACCCTTTCCGGTTCATGTTAGTTATCCTAGGAAAATGTGAGTGA  250

seq1  AGCGTATGCCAAGCTCGCCCTCTCG-AAGGGTG-ACCCTTCCTGTTCACC  289
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  AGCGTATGCCAAGCTCGCCCTCTCGAAAGGGTGAACCCTTCCTGTTCACC  300

seq1  GTAGCTATCCGCGCTTGCACAACCTTTGCACTTTCCTTTTTTTTTGCAGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTATCCGCGCTTGCACAACCTTTGCACTTTCCTTTTTTTTTGCAGT  350

seq1  CAAGTTGATTTCCTAGTTCATGAGTAACCAGAAGCAATAAAATAGAACAC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGATTTCCTAGTTCATGAGTAACCAGAAGCAATAAAATAGAACAC  400

seq1  CTGCCAACTTGCGGCTGCCCAGTTTGCAAACCTGCCCGCGGTCAGGGAAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAACTTGCGGCTGCCCAGTTTGCAAACCTGCCCGCGGTCAGGGAAC  450

seq1  ACCCCCATCGTCCCCCACCCCCAGTTAAAGCCGTGTCCAGCTGGCTGGCC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCATCGTCCCCCACCCCCAGTTAAAGCCGTGTCCAGCTGGCTGGCC  500

seq1  TCTGGCTTCCAGCTCTCCCTTCTTTACTAGGATCATGGTCCATCCATTAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCCAGCTCTCCCTTCTTTACTAGGATCATGGTCCATCCATTAT  550

seq1  CTGCCCTCTTCGCCCTCCAATAAATCTTCTCTGCCTATTGTTACCCTGGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCTTCGCCCTCCAATAAATCTTCTCTGCCTATTGTTACCCTGGA  600

seq1  TTTTCTTCCCCATTAAAGACCCACCTGTCTGTGACTTCTGTTTCTAATGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCCCATTAAAGACCCACCTGTCTGTGACTTCTGTTTCTAATGT  650

seq1  CACCAGATTTTTATGTACCTCTCCCCTCATCCAAGGGTACCTGACAAATG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGATTTTTATGTACCTCTCCCCTCATCCAAGGGTACCTGACAAATG  700

seq1  CCTTCTTACCCTTACCTGCCCTTGTGTGACTGTCCCCACCTTCTACAGAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTACCCTTACCTGCCCTTGTGTGACTGTCCCCACCTTCTACAGAC  750

seq1  ATCCTTGCCACGACAGTAACCAGATTAGCCACTTAGTAGCCACAGAGCTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCCACGACAGTAACCAGATTAGCCACTTAGTAGCCACAGAGCTC  800

seq1  GTTCATCAAAACCCCCGGCTATGGGATGACCTGCGGGTCTTCCTCAGGTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCAAAACCCCCGGCTATGGGATGACCTGCGGGTCTTCCTCAGGTT  850

seq1  TTGCAAGTCCTTATTGCCTGTTACCGCCCTTTCTTGGGTCTGGGTATGTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTCCTTATTGCCTGTTACCGCCCTTTCTTGGGTCTGGGTATGTT  900

seq1  TTCTCTCTTCCACCCAGCCCTGAAGAATTC  919
      ||||||||||||||||||||||||||||||
seq2  TTCTCTCTTCCACCCAGCCCTGAAGAATTC  930