BAC Information

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BAC

Clone NameB6Ng01-241G09
Chromosome15 (Build37)
Map Location 34,749,620 - 34,867,557
singlet/doubletdoublet
Overlap geneKcns2, Stk3
Upstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2
Downstream geneOsr2, Vps13b, EG666183, Cox6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241G09.bB6Ng01-241G09.g
ACCGA051321GA051322
length1,138307
definitionB6Ng01-241G09.b B6Ng01-241G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,749,620 - 34,750,750)(34,867,251 - 34,867,557)
sequence
gaattccaggacagccagagttatacagagaaaccctgtctcgaaagaaa
aacaaaaaacaaaaacaaaaaaagaaattgcccaaggttagctactatga
acatatgaacactgtcctattggtacaccagaaatttccatagcccacca
cacctgtgaggagtccatgattataattattcctttacttaagggatatt
ggtgagaggaaaaatgtagctctgaacctaggatcacccaactcttgtat
ctgaatcatttggacatagccttcatccaaactggtatatctctggagaa
ggttctctgggccctgcatttattattattattattattattattattat
tattattattgttattattattaggtatgttcttcatttacatttccaat
gctatcccaaaggttccccatacccccccccactcctctacccacccact
cccacttcttggccctggcgttcccctgtactgaggcatataaaatttgc
aagaccagggccctgcatttcgtgtgccaggcccagacgactcctcactt
atctcctctagagagctgaagatatttgagctttctagggtctgtgacta
gtttgtttgtctggctgggatgggttcagtgaggaaggcaaagtcctgag
tccctggaggacaaagaaaaaccataaaggaggcccttctgcctgtctgt
agatcaagagagctttgctttccagctaccctgggtgtagctggcttctg
gcaggtttatcatgtgtcatctccctcctggacagtatttatcccatgcc
aagagggctgcatctgtttcaaggccatctgggaaagcaggatgtgcttg
ggagcagcctgttctctgaccttgaaccctagaggccttataagttcaac
ccaggtggcatatcacttttcctaggaggagaacacggagtcagttctct
gtaacaattcactgatgagcaatttgctagcagaatcccaggagactagc
ctgtgctctggcctctttccagaagctggaggtaagagacccccctcccc
ccactggggtgtatgacatccagggaggcgctgacatttttttttttgat
ggaccttcctaggctttgagctaattgtggtgaggaga
tttggtaaaataaaaatcattggagtaaaattttgctttagcaagtttta
aataatttgttacttttgcaaaaattatctggaaaagtttttttccaaat
aaaattacaattacttatatttattaataagcataatacttcatagacaa
atagatacatatcttaaaatttcaagtagtattaacttatttttcttaga
tatgataaagttttgggattataattattttaaagtaaaaacttttttta
aaaaatcacctttatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_34749620_34750750
seq2: B6Ng01-241G09.b_44_1181

seq1  GAATTCCAGGACAGCCAGAGTTATACAGAGAAACCCTGTCTCGAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGAGTTATACAGAGAAACCCTGTCTCGAAAGAAA  50

seq1  AACAAAAAACAAAAACAAAAAAAGAAATTGCCCAAGGTTAGCTACTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACAAAAACAAAAAAAGAAATTGCCCAAGGTTAGCTACTATGA  100

seq1  ACATATGAACACTGTCCTATTGGTACACCAGAAATTTCCATAGCCCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAACACTGTCCTATTGGTACACCAGAAATTTCCATAGCCCACCA  150

seq1  CACCTGTGAGGAGTCCATGATTATAATTATTCCTTTACTTAAGGGATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGAGGAGTCCATGATTATAATTATTCCTTTACTTAAGGGATATT  200

seq1  GGTGAGAGGAAAAATGTAGCTCTGAACCTAGGATCACCCAACTCTTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAGGAAAAATGTAGCTCTGAACCTAGGATCACCCAACTCTTGTAT  250

seq1  CTGAATCATTTGGACATAGCCTTCATCCAAACTGGTATATCTCTGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCATTTGGACATAGCCTTCATCCAAACTGGTATATCTCTGGAGAA  300

seq1  GGTTCTCTGGGCCCTGCATTTATTATTATTATTATTATTATTATTATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTGGGCCCTGCATTTATTATTATTATTATTATTATTATTATTAT  350

seq1  TATTATTATTGTTATTATTATTAGGTATGTTCTTCATTTACATTTCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTGTTATTATTATTAGGTATGTTCTTCATTTACATTTCCAAT  400

seq1  GCTATCCCAAAGGTTCCCCATACCCCCCCCCACTCCTCTACCCACCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCCAAAGGTTCCCCATACCCCCCCCCACTCCTCTACCCACCCACT  450

seq1  CCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAATTTGC  500

seq1  AAGACCAGGGCCCTGCATTTCGTGTGCCAGGCCCAGACGACTCCTCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGGGCCCTGCATTTCGTGTGCCAGGCCCAGACGACTCCTCACTT  550

seq1  ATCTCCTCTAGAGAGCTGAAGATATTTGAGCTTTCTAGGGTCTGTGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCTAGAGAGCTGAAGATATTTGAGCTTTCTAGGGTCTGTGACTA  600

seq1  GTTTGTTTGTCTGGCTGGGATGGGTTCAGTGAGGAAGGCAAAGTCCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTCTGGCTGGGATGGGTTCAGTGAGGAAGGCAAAGTCCTGAG  650

seq1  TCCCTGGAGGACAAAGAAAAACCATAAAGGAGGCCCTTCTGCCTGTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAGGACAAAGAAAAACCATAAAGGAGGCCCTTCTGCCTGTCTGT  700

seq1  AGATCAAGAGAGCTTTGCTTTCCAGCTACCCTGGGTGTAGCTGGCTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGAGAGCTTTGCTTTCCAGCTACCCTGGGTGTAGCTGGCTTCTG  750

seq1  GCAGGTTTATCATGTGTCATCTCCCTCCTGGACAGTATTTATCCCATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTATCATGTGTCATCTCCCTCCTGGACAGTATTTATCCCATGCC  800

seq1  AAGAGGGCTGCATCTG-TTCAAGGCCATCTGGGAAAGCAGGATGTGCTTG  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAGGGCTGCATCTGTTTCAAGGCCATCTGGGAAAGCAGGATGTGCTTG  850

seq1  GGAGCAGCCTGTTCTCTGAACCTTGAACCCTAGAGGCCTTATAAGTTTCA  899
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  GGAGCAGCCTGTTCTCTG-ACCTTGAACCCTAGAGGCCTTATAAG-TTCA  898

seq1  ACCCAGGTGGCATATCACTTTTTCCTAGGA-GAGAACACGGAGTCAGTTC  948
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  ACCCAGGTGGCATATCAC-TTTTCCTAGGAGGAGAACACGGAGTCAGTTC  947

seq1  TCTGTAAC-ATTCACTGATGAGCAATTTGCTAAGCAGAATCCCAGGAGAC  997
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  TCTGTAACAATTCACTGATGAGCAATTTGCT-AGCAGAATCCCAGGAGAC  996

seq1  CAGCCTGTGCTCTGGCCTC-TTCCAGAAGCT-GAGGTAAGAGACCCCCCT  1045
       |||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TAGCCTGTGCTCTGGCCTCTTTCCAGAAGCTGGAGGTAAGAGACCCCCCT  1046

seq1  -CCCCCACT-GGGTGTATGACA-CCAGGGAGGCGCTGACATTTTTTTTTT  1092
       |||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CCCCCCACTGGGGTGTATGACATCCAGGGAGGCGCTGACATTTTTTTTTT  1096

seq1  TGAT-GACTTCCCTAGGCCTTGAGCTAATTGTG--AAGGAGA  1131
      |||| ||| | ||||||| ||||||||||||||   ||||||
seq2  TGATGGACCTTCCTAGGCTTTGAGCTAATTGTGGTGAGGAGA  1138

seq1: chr15_34867251_34867557
seq2: B6Ng01-241G09.g_73_379 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACAAATAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACAAATAAAGGT  50

seq1  GATTTTTTAAAAAAAGTTTTTACTTTAAAATAATTATAATCCCAAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTAAAAAAAGTTTTTACTTTAAAATAATTATAATCCCAAAACTT  100

seq1  TATCATATCTAAGAAAAATAAGTTAATACTACTTGAAATTTTAAGATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATCTAAGAAAAATAAGTTAATACTACTTGAAATTTTAAGATATG  150

seq1  TATCTATTTGTCTATGAAGTATTATGCTTATTAATAAATATAAGTAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTTGTCTATGAAGTATTATGCTTATTAATAAATATAAGTAATTG  200

seq1  TAATTTTATTTGGAAAAAAACTTTTCCAGATAATTTTTGCAAAAGTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTTGGAAAAAAACTTTTCCAGATAATTTTTGCAAAAGTAACA  250

seq1  AATTATTTAAAACTTGCTAAAGCAAAATTTTACTCCAATGATTTTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTAAAACTTGCTAAAGCAAAATTTTACTCCAATGATTTTTATTT  300

seq1  TACCAAA  307
      |||||||
seq2  TACCAAA  307