BAC Information

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BAC

Clone NameB6Ng01-242N04
Chromosome15 (Build37)
Map Location 92,210,756 - 92,243,208
singlet/doubletdoublet
Overlap genePdzrn4
Upstream geneSlc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242N04.bB6Ng01-242N04.g
ACCGA052365GA052366
length1,093696
definitionB6Ng01-242N04.b B6Ng01-242N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,210,756 - 92,211,846)(92,242,513 - 92,243,208)
sequence
gaattctctgagaattctggttctgtgctgactagcttagcaatcttatc
catatgagcgatgccagtaatacagtcaccccaggacttacatgtttcaa
taagcagggattgtataggaaaagcctggcttggttcatatcattatctt
catgaccatcttttatggaaagacctaaagcccagatcaccatacctttc
cttcctggctttcttaccaatcccaatgcccaccccttcaatataacata
cccctcccccatactccccagctataattcacctgccttctgattctgtt
ctccagagtttggataaaagtggctaagatggtaagctgagggattcatg
atgcctgtgagggagggacttaggatgcccatggctgaaggagacaaacg
tggaaacaaggagaggagtctgtagaaatctgcgttgatatcctaagttg
ccagttaggagccatataattcagggtcaaatgtttgacctttttcaact
atggtgacatcatctgaaaaaaaaaatcaaaatactatagggtttttctt
cacctcctgacattgctgtggctctaacacaaatgctgtcctattttaag
aagtctcacatactcactaaaaagattgaacttcacacagacctgtactg
gtaaccatgtctgtgtgcattgcattttctttgcccattcggttttttta
gtgggcatctaggctgaggccataccttaactactgtgaataattcatac
aataagtatgaatgtggactgtttaattcctttgctcgtgtcccaggaag
taggacaattaactgggttctttgtttttgttttattctttcaattttat
tgcaaagttcctctatacagttctcataattacaacaataatttaccttt
ccatgagcagtatgtgagcctttattgaatttattgcctctgcctatttt
ttcagcattttaaacctttatttacttggtggggagccattctgactgaa
gtggggatgggtatctcaatacagttttgattgggattgtctgatgctaa
ggatatatacataccttcccatatatgttgggccttgcatgtg

gaattctggacagacacaaccaactgcttctttaaagctgcctgactgca
aagagtcagcttgcagatcatttcctttcacatctttgcagcctgttgtt
gtccgcatgcttatccctagtgtgtgtccaccttgagtatgaaggcagtg
ttcctcggagagtaatatgcgctgtctctggctttgtgttcttctgtagt
gttagggaattggtggccttgcgcacactgaaaatgttcttcatgactgg
gtagggcttagggcatggagagaactttgcacacctatcttcgtgacaga
ccattttaaatattcctcagatgcatggtgtccatttcacagctttggtt
aaaagggcacatacctagaggcacacatgcccttgtacataccactacca
ccataagaggaagactggggcagagctcagaaaatgttacccacttaaca
cagaaacctctttctttcggccttcaaaaatatttgctaaaattgtctac
actctgaaaatacaggtccagacctagtgaaatatgtttttgggaaaaga
ataggtaagaaaatatactcagtgttgttattggttttaactttttaaaa
tgtacatcatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtttgaaattatttctgtctgtgttaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92210756_92211846
seq2: B6Ng01-242N04.b_45_1137

seq1  GAATTCTCTGAGAATTCTGGTTCTGTGCTGACTAGCTTAGCAATCTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGAATTCTGGTTCTGTGCTGACTAGCTTAGCAATCTTATC  50

seq1  CATATGAGCGATGCCAGTAATACAGTCACCCCAGGACTTACATGTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGCGATGCCAGTAATACAGTCACCCCAGGACTTACATGTTTCAA  100

seq1  TAAGCAGGGATTGTATAGGAAAAGCCTGGCTTGGTTCATATCATTATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGGATTGTATAGGAAAAGCCTGGCTTGGTTCATATCATTATCTT  150

seq1  CATGACCATCTTTTATGGAAAGACCTAAAGCCCAGATCACCATACCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCATCTTTTATGGAAAGACCTAAAGCCCAGATCACCATACCTTTC  200

seq1  CTTCCTGGCTTTCTTACCAATCCCAATGCCCACCCCTTCAATATAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCTTTCTTACCAATCCCAATGCCCACCCCTTCAATATAACATA  250

seq1  CCCCTCCCCCATACTCCCCAGCTATAATTCACCTGCCTTCTGATTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCATACTCCCCAGCTATAATTCACCTGCCTTCTGATTCTGTT  300

seq1  CTCCAGAGTTTGGATAAAAGTGGCTAAGATGGTAAGCTGAGGGATTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGTTTGGATAAAAGTGGCTAAGATGGTAAGCTGAGGGATTCATG  350

seq1  ATGCCTGTGAGGGAGGGACTTAGGATGCCCATGGCTGAAGGAGACAAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGAGGGAGGGACTTAGGATGCCCATGGCTGAAGGAGACAAACG  400

seq1  TGGAAACAAGGAGAGGAGTCTGTAGAAATCTGCGTTGATATCCTAAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAAGGAGAGGAGTCTGTAGAAATCTGCGTTGATATCCTAAGTTG  450

seq1  CCAGTTAGGAGCCATATAATTCAGGGTCAAATGTTTGACCTTTTTCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAGGAGCCATATAATTCAGGGTCAAATGTTTGACCTTTTTCAACT  500

seq1  ATGGTGACATCATCTGAAAAAAAAAATCAAAATACTATAGGGTTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACATCATCTGAAAAAAAAAATCAAAATACTATAGGGTTTTTCTT  550

seq1  CACCTCCTGACATTGCTGTGGCTCTAACACAAATGCTGTCCTATTTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTGACATTGCTGTGGCTCTAACACAAATGCTGTCCTATTTTAAG  600

seq1  AAGTCTCACATACTCACTAAAAAGATTGAACTTCACACAGACCTGTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCACATACTCACTAAAAAGATTGAACTTCACACAGACCTGTACTG  650

seq1  GTAACCATGTCTGTGTGCATTGCATTTTCTTTGCCCATTCGGTTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCATGTCTGTGTGCATTGCATTTTCTTTGCCCATTCGGTTTTTTTA  700

seq1  GTGGGCATCTAGGCTGAGGCCATACCTTAACTACTGTGAATAATTCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATCTAGGCTGAGGCCATACCTTAACTACTGTGAATAATTCATAC  750

seq1  AATAAGTATGAATGTGGACTGTTTAATTCCTTTGCTCGTGTCCCAGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATGAATGTGGACTGTTTAATTCCTTTGCTCGTGTCCCAGGAAG  800

seq1  TAGGACAATTAACTGGGTTCTTTGTTTTTGTTTTATTCTTTCAATTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAATTAACTGGGTTCTTTGTTTTTGTTTTATTCTTTCAATTTTAT  850

seq1  TGCAAAGTTCCTCTATACAGTTCTCATAATTACAACAATAATTTACCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTTCCTCTATACAGTTCTCATAATTACAACAATAATTTACCTTT  900

seq1  CCATGAGCAGTATGTGAGCCTTTATTGAATTTATTGCCTCTGCCTATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGCAGTATGTGAGCCTTTATTGAATTTATTGCCTCTGCCTATTTT  950

seq1  TTCAGCA-TTTAAAACTTTATTTACTTGGT-GGGAGCCATTCTGACTGAA  998
      ||||||| |||||| ||||||||||||||| |||||||||||||||||||
seq2  TTCAGCATTTTAAACCTTTATTTACTTGGTGGGGAGCCATTCTGACTGAA  1000

seq1  GT-GGGAT-GGTATCTCAATACAGTTTTGATTTGGATTGTCTTGATTGCT  1046
      || ||||| ||||||||||||||||||||||| |||||||| ||| ||||
seq2  GTGGGGATGGGTATCTCAATACAGTTTTGATTGGGATTGTC-TGA-TGCT  1048

seq1  AAGGATATTATACATA-CTTTCCATATATGTTGGGCCTTGCATGTG  1091
      ||||||| |||||||| ||| |||||||||||||||||||||||||
seq2  AAGGATA-TATACATACCTTCCCATATATGTTGGGCCTTGCATGTG  1093


seq1: chr15_92242513_92243208
seq2: B6Ng01-242N04.g_64_759 (reverse)

seq1  TCTTTAACACAGACAGAAATAATTTCACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTTAACACAGACAGAAATAATTTCAAACACACACACACACACACACAC  50

seq1  ACACACACACACACACACACACACATATATATATATATGATGTACATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACATATATATATATATGATGTACATTTT  100

seq1  AAAAAGTTAAAACCAATAACAACACTGAGTATATTTTCTTACCTATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTAAAACCAATAACAACACTGAGTATATTTTCTTACCTATTCTT  150

seq1  TTCCCAAAAACATATTTCACTAGGTCTGGACCTGTATTTTCAGAGTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAAACATATTTCACTAGGTCTGGACCTGTATTTTCAGAGTGTAG  200

seq1  ACAATTTTAGCAAATATTTTTGAAGGCCGAAAGAAAGAGGTTTCTGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTAGCAAATATTTTTGAAGGCCGAAAGAAAGAGGTTTCTGTGTT  250

seq1  AAGTGGGTAACATTTTCTGAGCTCTGCCCCAGTCTTCCTCTTATGGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGTAACATTTTCTGAGCTCTGCCCCAGTCTTCCTCTTATGGTGGT  300

seq1  AGTGGTATGTACAAGGGCATGTGTGCCTCTAGGTATGTGCCCTTTTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTATGTACAAGGGCATGTGTGCCTCTAGGTATGTGCCCTTTTAACC  350

seq1  AAAGCTGTGAAATGGACACCATGCATCTGAGGAATATTTAAAATGGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTGAAATGGACACCATGCATCTGAGGAATATTTAAAATGGTCTG  400

seq1  TCACGAAGATAGGTGTGCAAAGTTCTCTCCATGCCCTAAGCCCTACCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAAGATAGGTGTGCAAAGTTCTCTCCATGCCCTAAGCCCTACCCAG  450

seq1  TCATGAAGAACATTTTCAGTGTGCGCAAGGCCACCAATTCCCTAACACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGAACATTTTCAGTGTGCGCAAGGCCACCAATTCCCTAACACTA  500

seq1  CAGAAGAACACAAAGCCAGAGACAGCGCATATTACTCTCCGAGGAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAACACAAAGCCAGAGACAGCGCATATTACTCTCCGAGGAACACT  550

seq1  GCCTTCATACTCAAGGTGGACACACACTAGGGATAAGCATGCGGACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATACTCAAGGTGGACACACACTAGGGATAAGCATGCGGACAACA  600

seq1  ACAGGCTGCAAAGATGTGAAAGGAAATGATCTGCAAGCTGACTCTTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGCAAAGATGTGAAAGGAAATGATCTGCAAGCTGACTCTTTGCA  650

seq1  GTCAGGCAGCTTTAAAGAAGCAGTTGGTTGTGTCTGTCCAGAATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCAGCTTTAAAGAAGCAGTTGGTTGTGTCTGTCCAGAATTC  696


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