BAC Information

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BAC

Clone NameB6Ng01-245H06
Chromosome15 (Build37)
Map Location 4,391,908 - 4,393,101
singlet/doubletsinglet
Overlap genePlcxd3
Upstream geneGhr, LOC223278, Fbxo4, AW549877, LOC100039196, Oxct1
Downstream geneC6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245H06.bB6Ng01-245H06.g
ACCGA054333GA054334
length1,1881,163
definitionB6Ng01-245H06.b B6Ng01-245H06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcagtattacaaagcatcatttagctttacttgtaactctatt
ctggttggatactgttcccaaactatgatgacatctcatgagtgtgcatt
accttttcattccattagctggagaactcctgaaatgacaaaattaaaga
agtacaaagcaatctttggatatacttccttcttgagttattactagtgt
ctaggccagagtttcctctaaaattttacataataactttaattggaggc
gagcagtgatgtcaattattatataatatttatatacagtactcagtagg
ttacttatctgttattttaaatgtgcttcctagcgcagtattggtttctc
cctcagattagagtttatttttacatatgtcctaaaatgtctgaaatgtc
ttttttaaattttaatacttttaatttatttatttattttgatgtagggt
gcatttggagtcactcatacatgccagagctattcatatcaaggtctgag
gacagttgcaggactgggttttctcctgccactttataggttctatgaac
tgatgccagaacttggttgtaagtacctttacctattaagttatattgcc
agctcctcaatctttcttaggaataatgatattatagccaatcatgtctc
aatatggaagagcagggtcaaagaaagaatttctaattttaccttaactt
ggaatatcaggaaaaatggagtcaaattttgctttagtttggaaagattc
atttagtgcatctcagtggtatctgccaatgttttgttttgtttttttca
cctggtagtaacatcaactttgtctaccaagaatgaactataagcctact
actataagtagtatgacaatctccctcacagactcaagtatttaggcact
tggtccccagatgggtcccattgtttgagggagatgatgtggcatggcct
agatgaagcagtagcttggggcaggcaggctttgaaagtttttgccttaa
cccactaccagttcactctacttgtcaaatgattgctatttattcctcat
accctaataggatagatagatatccttatgattagaatattatctagtac
atttagaattatttttagaatcctaggattcctaaatatcgactagtcct
tatcctaattctatcttgaagtctaaccctttccacag
gaattctgttagaagctagaaaaaatatcttgggagccgacgggcagcct
acacagctacaaaatgagatcgacatgggattccctttgactcaccccag
ttgggactgcaacatggccgaaggtagggagagcttgaaaatctattgcc
aggctctggtctccaaggtgcctgaagacagccccctaatttggctaagg
taagagttaatgcaggggccaattgaatatccttcagtgctccttgaaag
gcttcaggcggttcactccctttgatcttacctcagaagcccagaaggcc
tcagtggccctggccttcataaggcagttagccccggtatcagaaagaaa
cttcagagataggaaggtgtattacgagagagagagagagagagagagag
agagagagagagagagagagagagagagagagacagagagagagacagag
agagagacagagagagagagacagagagagagagagacagagacagagag
agagacagagagagagagagagacagagagagagagacagagagagagag
agagacagagacagagagacagagagagagagagacagagagagagagag
aggtgggaggaagaagaaagagaaaagaggaggaatcgtagacaagaaag
aaatttgactagacttttggccgcagtggtaggagagagagaaaaaagac
aggacctagaaacttgggcaacagaagaccaagcctcagctaaaaaggct
ctcaactgtgtcagactgaagttacttatttgggatacacccttcgagat
gggaagcagtggttaagggaagccagaaaaaagactaactcaggatcctc
accccaactacaccaaggcaagtaagagaatttcttgggcaccactggct
tctgcagactctggacacctgggttggtgacccttagctgccccattgta
accctaaactgaggaagtgtaagtgtttgtgtggaccccagatccacaga
agcctttaaagaaataaaagggccctactgaacagcagcttggacttgct
gactaatcagcttacctcttatgtggaaagacgagcaagaatgcagaagg
tcctaactcagacctggaacctgaaaaaggccagtgccttatcctaattc
aggaagagtttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_4391908_4393101
seq2: B6Ng01-245H06.b_47_1234 (reverse)

seq1  CTGT-GAAAGGGTTAGAATTAAGGATAAGAATTAGAATTAAGGACTAGGT  49
      |||| |||||||||||| || | ||| |||||||| | ||||||||| ||
seq2  CTGTGGAAAGGGTTAGACTTCAAGAT-AGAATTAGGA-TAAGGACTA-GT  47

seq1  CGATTATTAAGGATTCTAAGATATCT-AAAATAATCCTAAAATTGTACCT  98
      ||||  ||| | || ||| ||| ||| |||||||| |||||  |||||  
seq2  CGATATTTAGGAATCCTAGGAT-TCTAAAAATAATTCTAAA--TGTAC--  92

seq1  AAGATAATA-TCTAATCATTAAGGATATCTATCTAATCCTAT--AGGTAT  145
       |||||||| |||||||| ||||||||||||||| |||||||   |||||
seq2  TAGATAATATTCTAATCA-TAAGGATATCTATCT-ATCCTATTAGGGTAT  140

seq1  TGAGAATAAATAGCAATCCATTTGACAAGTAGAGTGAACTGGTAGTGGGT  195
         |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGGAATAAATAGCAAT-CATTTGACAAGTAGAGTGAACTGGTAGTGGGT  189

seq1  TAAGGCAAAAAACTTTCAAAGCCTGCCTGCCCCAAGCTACCTGCTTCATC  245
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAGGC-AAAAACTTTCAAAGCCTGCCTGCCCCAAGCTA-CTGCTTCATC  237

seq1  TA-GCCATGCCACATCATCT-CCTCAAACAATGGGA-CCATCTGGGGACC  292
      || ||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TAGGCCATGCCACATCATCTCCCTCAAACAATGGGACCCATCTGGGGACC  287

seq1  AAGTGCCTAAATACTTGAGTCTGTGAGGGAGATTGTCATACTACTTATAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTAAATACTTGAGTCTGTGAGGGAGATTGTCATACTACTTATAG  337

seq1  TAGTAGGCTTATAGTTCATTCTTGGTAGACAAAGTTGATGTTACTACCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGCTTATAGTTCATTCTTGGTAGACAAAGTTGATGTTACTACCAG  387

seq1  GTGAAAAAAACAAAACAAAACATTGGCAGATACCACCTGAGATGCACTAA  442
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGAAAAAAACAAAACAAAACATTGGCAGATACCA-CTGAGATGCACTAA  436

seq1  ATGAATCTTTCCAAACTAAAGCAAAATTTGACTCCATTTTTCCTGATATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTTTCCAAACTAAAGCAAAATTTGACTCCATTTTTCCTGATATT  486

seq1  CCAAGTTAAGGTAAAATTAGAAATTCTTTCTTTGACCCTGCTCTTCCATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTAAGGTAAAATTAGAAATTCTTTCTTTGACCCTGCTCTTCCATA  536

seq1  TTGAGACATGATTGGCTATAATATCATTATTCCTAAGAAAGATTGAGGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACATGATTGGCTATAATATCATTATTCCTAAGAAAGATTGAGGAG  586

seq1  CTGGCAATATAACTTAATAGGTAAAGGTACTTACAACCAAGTTCTGGCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAATATAACTTAATAGGTAAAGGTACTTACAACCAAGTTCTGGCAT  636

seq1  CAGTTCATAGAACCTATAAAGTGGCAGGAGAAAACCCAGTCCTGCAACTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATAGAACCTATAAAGTGGCAGGAGAAAACCCAGTCCTGCAACTG  686

seq1  TCCTCAGACCTTGATATGAATAGCTCTGGCATGTATGAGTGACTCCAAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACCTTGATATGAATAGCTCTGGCATGTATGAGTGACTCCAAAT  736

seq1  GCACCCTACATCAAAATAAATAAATAAATTAAAAGTATTAAAATTTAAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTACATCAAAATAAATAAATAAATTAAAAGTATTAAAATTTAAAA  786

seq1  AAGACATTTCAGACATTTTAGGACATATGTAAAAATAAACTCTAATCTGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTCAGACATTTTAGGACATATGTAAAAATAAACTCTAATCTGA  836

seq1  GGGAGAAACCAATACTGCGCTAGGAAGCACATTTAAAATAACAGATAAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAACCAATACTGCGCTAGGAAGCACATTTAAAATAACAGATAAGT  886

seq1  AACCTACTGAGTACTGTATATAAATATTATATAATAATTGACATCACTGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACTGAGTACTGTATATAAATATTATATAATAATTGACATCACTGC  936

seq1  TCGCCTCCAATTAAAGTTATTATGTAAAATTTTAGAGGAAACTCTGGCCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTCCAATTAAAGTTATTATGTAAAATTTTAGAGGAAACTCTGGCCT  986

seq1  AGACACTAGTAATAACTCAAGAAGGAAGTATATCCAAAGATTGCTTTGTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTAGTAATAACTCAAGAAGGAAGTATATCCAAAGATTGCTTTGTA  1036

seq1  CTTCTTTAATTTTGTCATTTCAGGAGTTCTCCAGCTAATGGAATGAAAAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTAATTTTGTCATTTCAGGAGTTCTCCAGCTAATGGAATGAAAAG  1086

seq1  GTAATGCACACTCATGAGATGTCATCATAGTTTGGGAACAGTATCCAACC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCACACTCATGAGATGTCATCATAGTTTGGGAACAGTATCCAACC  1136

seq1  AGAATAGAGTTACAAGTAAAGCTAAATGATGCTTTGTAATACTGATGAAT  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAGTTACAAGTAAAGCTAAATGATGCTTTGTAATACTGATGAAT  1186

seq1  TC  1194
      ||
seq2  TC  1188