BAC Information

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BAC

Clone NameB6Ng01-247N09
Chromosome15 (Build37)
Map Location 47,712,973 - 47,879,741
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream geneEG665146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247N09.bB6Ng01-247N09.g
ACCGA056069GA056070
length1,136567
definitionB6Ng01-247N09.b B6Ng01-247N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,712,973 - 47,714,110)(47,879,175 - 47,879,741)
sequence
gaattccatcaggaataagagatccactaacttcctttaatagcatctcg
ttttctggtggaccatcccaaactcggagtatatcatgtgaggcttctgt
atcgaaagcaagaaactgtaggctgtgggaaagccatacatctttggtta
ttttaaataaggaaaacaatcatattatcaaaagaatcgaacaaatatat
atttttgctttgaatctctgcaactcttttctaagaataaagagtaaatt
gtgtaatggaaagtataacaaaaaatgttttttgaacagcagaatatact
tccttagacaagcatttaagacatgatttcaacattattgcaaattacag
aaatcctaagtagtcattttgtttaatgttcataaattttaactctggta
ataaaataaatacttacaaaggacagtctatgtgccagttactttgaaca
aaatgcattgctaatactttgtataatcgctgtaatgaccttatggagta
gaaacaatttttatctcggttttttggatgttgtgaatggagtctagata
tatcaaataattgctgaaagaggatctgtgtcactcattaaatttaattg
tgtgacttcacagcacatgcttttaccgcttgattacattaacgctggtc
tactttgtgctaatctgtataaaatcatcatgttatttttggttccattg
ggaaacctggctagactctttgtatatgatttatgattgatattgaacta
tcagaactttcaatttttatatattaatatcaaaagctgtttgttaatga
aaagatcccagagtcttgcaaaattaaatatttttgtgtaatatttttta
accttaactaaatcaatgttgtcctaaagatcctaaaggttgaggataga
ggtgccataggccattctgagttctttgagttgctttatattacaaaagc
aatgcagtagttcatactgcattcagtgaaatttcaccacctttgaaaca
tgttctgaattttattttacatcagatagcaaatttttcaggtttaactt
aaagctatctattatttattaatttatttatttatttattaaatagtaga
tgcttttagagactagggttcactggtggcctgggt

agtgtttagctctgtaccccaatttttaattgggttatttgggttgttgt
ctaacttcttgagttctttatacattttggatattagccctctgtcagat
gtatgattggtgaagatccttctccaatctggaggctgccattttgtcct
attgacggtgtattttgcctgacagaagcttcagtttcatgaggtcccat
ttaccaattgttgatcttagagcctgagatattgatgttctgttcaggaa
attgtctcttgcaccaatgtgaatgttcagggccttttcccactttctca
tctctgagattctgtgtatatggttttatgataaagtccttgatccactt
ggacttgtgttttcttaagggtgaagaatatggatctgtttgcattcttc
tacatgatgacatccagtacaaccagcactatttgtttaagatgttttct
tttttctctaattactaaatagaacaatacaatatatagatgaatataac
atctaagctgatacttcataataatgaagtcatacaatcttaccttaatt
atctccctctcccagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47712973_47714110
seq2: B6Ng01-247N09.b_49_1184

seq1  GAATTCCATCAGGAATAAGAGATCCACTAACTTCCTTTAATAGCATCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGGAATAAGAGATCCACTAACTTCCTTTAATAGCATCTCG  50

seq1  TTTTCTGGTGGACCATCCCAAACTCGGAGTATATCATGTGAGGCTTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGTGGACCATCCCAAACTCGGAGTATATCATGTGAGGCTTCTGT  100

seq1  ATCGAAAGCAAGAAACTGTAGGCTGTGGGAAAGCCATACATCTTTGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAAGCAAGAAACTGTAGGCTGTGGGAAAGCCATACATCTTTGGTTA  150

seq1  TTTTAAATAAGGAAAACAATCATATTATCAAAAGAATCGAACAAATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAGGAAAACAATCATATTATCAAAAGAATCGAACAAATATAT  200

seq1  ATTTTTGCTTTGAATCTCTGCAACTCTTTTCTAAGAATAAAGAGTAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTTTGAATCTCTGCAACTCTTTTCTAAGAATAAAGAGTAAATT  250

seq1  GTGTAATGGAAAGTATAACAAAAAATGTTTTTTGAACAGCAGAATATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATGGAAAGTATAACAAAAAATGTTTTTTGAACAGCAGAATATACT  300

seq1  TCCTTAGACAAGCATTTAAGACATGATTTCAACATTATTGCAAATTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGACAAGCATTTAAGACATGATTTCAACATTATTGCAAATTACAG  350

seq1  AAATCCTAAGTAGTCATTTTGTTTAATGTTCATAAATTTTAACTCTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTAAGTAGTCATTTTGTTTAATGTTCATAAATTTTAACTCTGGTA  400

seq1  ATAAAATAAATACTTACAAAGGACAGTCTATGTGCCAGTTACTTTGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAATACTTACAAAGGACAGTCTATGTGCCAGTTACTTTGAACA  450

seq1  AAATGCATTGCTAATACTTTGTATAATCGCTGTAATGACCTTATGGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATTGCTAATACTTTGTATAATCGCTGTAATGACCTTATGGAGTA  500

seq1  GAAACAATTTTTATCTCGGTTTTTTGGATGTTGTGAATGGAGTCTAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATTTTTATCTCGGTTTTTTGGATGTTGTGAATGGAGTCTAGATA  550

seq1  TATCAAATAATTGCTGAAAGAGGATCTGTGTCACTCATTAAATTTAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATAATTGCTGAAAGAGGATCTGTGTCACTCATTAAATTTAATTG  600

seq1  TGTGACTTCACAGCACATGCTTTTACCGCTTGATTACATTAACGCTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTCACAGCACATGCTTTTACCGCTTGATTACATTAACGCTGGTC  650

seq1  TACTTTGTGCTAATCTGTATAAAATCATCATGTTATTTTTGGTTCCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTGCTAATCTGTATAAAATCATCATGTTATTTTTGGTTCCATTG  700

seq1  GGAAACCTGGCTAGACTCTTTGTATATGATTTATGATTGATATTGAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTGGCTAGACTCTTTGTATATGATTTATGATTGATATTGAACTA  750

seq1  TCAGAACTTTCAATTTTTATATATTAATATCAAAAGCTGTTTGTTAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTTTCAATTTTTATATATTAATATCAAAAGCTGTTTGTTAATGA  800

seq1  AAAGATCCCAGAGTCTTGCAAAATTAAATATTTTTGTGTAATA-TTTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAGATCCCAGAGTCTTGCAAAATTAAATATTTTTGTGTAATATTTTTTA  850

seq1  ACCTTAACTAAATCAATGTTGTCCTAAAGATCCT-AAGGTTGAGGATAGA  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCTTAACTAAATCAATGTTGTCCTAAAGATCCTAAAGGTTGAGGATAGA  900

seq1  GGTGCCATAGGCCATTCTGAGTTCTTTGAGTTGCTTTATATTACAAAAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCATAGGCCATTCTGAGTTCTTTGAGTTGCTTTATATTACAAAAGC  950

seq1  AATGCAGTAGTTCATACTGCATTCAGTG-AATTTCACCACC-TTGAAACA  996
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  AATGCAGTAGTTCATACTGCATTCAGTGAAATTTCACCACCTTTGAAACA  1000

seq1  TG-TCTGAATTTTA-TTTACATCAGATAGCAAAATTTTTCAGG-TTAACT  1043
      || ||||||||||| ||||||||||||||| |||||||||||| ||||||
seq2  TGTTCTGAATTTTATTTTACATCAGATAGC-AAATTTTTCAGGTTTAACT  1049

seq1  TAAAGCTATTCTTATTTATTTATTTATTTATTTATTTATTTATTTAATAA  1093
      |||||||| |||   ||||||||| ||||||||||||||||||| ||| |
seq2  TAAAGCTA-TCT--ATTATTTATTAATTTATTTATTTATTTATTAAAT-A  1095

seq1  TTAGATTGGTTTTTAGAGACTAGGTTTCACTGTGTTGCCCTGGGT  1138
       |||||  | |||||||||||||| |||||  || || |||||||
seq2  GTAGAT--GCTTTTAGAGACTAGGGTTCAC--TGGTGGCCTGGGT  1136


seq1: chr15_47879175_47879741
seq2: B6Ng01-247N09.g_75_641 (reverse)

seq1  GACTGGGAGAGGGAGATAATTAAGGTAAGATTGTATGACTTCATTATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGAGAGGGAGATAATTAAGGTAAGATTGTATGACTTCATTATTAT  50

seq1  GAAGTATCAGCTTAGATGTTATATTCATCTATATATTGTATTGTTCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCAGCTTAGATGTTATATTCATCTATATATTGTATTGTTCTATT  100

seq1  TAGTAATTAGAGAAAAAAGAAAACATCTTAAACAAATAGTGCTGGTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTAGAGAAAAAAGAAAACATCTTAAACAAATAGTGCTGGTTGTA  150

seq1  CTGGATGTCATCATGTAGAAGAATGCAAACAGATCCATATTCTTCACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTCATCATGTAGAAGAATGCAAACAGATCCATATTCTTCACCCT  200

seq1  TAAGAAAACACAAGTCCAAGTGGATCAAGGACTTTATCATAAAACCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACACAAGTCCAAGTGGATCAAGGACTTTATCATAAAACCATAT  250

seq1  ACACAGAATCTCAGAGATGAGAAAGTGGGAAAAGGCCCTGAACATTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAATCTCAGAGATGAGAAAGTGGGAAAAGGCCCTGAACATTCACA  300

seq1  TTGGTGCAAGAGACAATTTCCTGAACAGAACATCAATATCTCAGGCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCAAGAGACAATTTCCTGAACAGAACATCAATATCTCAGGCTCTA  350

seq1  AGATCAACAATTGGTAAATGGGACCTCATGAAACTGAAGCTTCTGTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAACAATTGGTAAATGGGACCTCATGAAACTGAAGCTTCTGTCAGG  400

seq1  CAAAATACACCGTCAATAGGACAAAATGGCAGCCTCCAGATTGGAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACACCGTCAATAGGACAAAATGGCAGCCTCCAGATTGGAGAAGG  450

seq1  ATCTTCACCAATCATACATCTGACAGAGGGCTAATATCCAAAATGTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACCAATCATACATCTGACAGAGGGCTAATATCCAAAATGTATAA  500

seq1  AGAACTCAAGAAGTTAGACAACAACCCAAATAACCCAATTAAAAATTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGAAGTTAGACAACAACCCAAATAACCCAATTAAAAATTGGG  550

seq1  GTACAGAGCTAAACACT  567
      |||||||||||||||||
seq2  GTACAGAGCTAAACACT  567


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