BAC Information

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BAC

Clone NameB6Ng01-248A15
Chromosome15 (Build37)4 (Build37)
Map Location 13,329,447 - 13,330,11568,254,386 - 68,254,968
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907
Downstream geneLOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248A15.bB6Ng01-248A15.g
ACCGA056215GA056216
length9941,164
definitionB6Ng01-248A15.b B6Ng01-248A15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,329,447 - 13,330,115)(68,254,386 - 68,254,968)
sequence
gaattcttttgcctctcagatacccattttttaatggagtaatttgattc
ccccttcactcttgattcattctcctgttgaaaatgactcccgtacccta
tatgggaaaagccagcattcctgctggatcagtggcccccccccctgtct
tgttgatggcgctctctctctctctctctctctctctctgtctctggtcc
catttgtcgattcttgatcttacagcacaagccattgctgttctattcag
taatttttaccctgtacccatatctgtccctgtttagtttctgtttccat
gatctgtccattggtgaaagtggaatgttgaagtctcccactattattgt
ttgagttacaatgtgtgctttgagctttactaaagtttctttaatgaatg
tggctgcccttgcatttggagcatagatattcagaattgagagttcctct
tggaggattttacctttgatgagtatgaagtgcccctccttgtctttttt
gattattttgggttggaagtccattttgttagatattagaatggctactc
cagattgtttcttcagaccatttgcttgtaatattgttttccagcctttc
attccgaggtagtgtctatctttttctctgagatgagtttcctgtaagca
gcaaaatgtttggatcttgtttgtgtagccagtttgttagtctatgcctt
tttattggggagttgagtccattgatattaagagatattatggaaaagta
attgttgcttcctgttatttttgttttaaagttggcattctgttcttgtg
gctttctctcttagtttgatgagggattacctttcttttattttctagga
tgtggtttccgtccttgtattggtttttttttctgttattatcctttgaa
gggctggactcgtggagagattattatgtgaatttgttttgtcgtggaat
actctagatttcctcatctatcgtaattgagatgtttggctggg
gaattccttgtttgtacatgtgtcccatttttatggtattattttgtatg
ttgtgacttcctatggaggaccggtgtgcggatacttggcccttccttct
aatgggaaacaaagtatccctgtaacgaattacgaagacaaaactcgcag
ctgagacttaatgaaggaccttgcgaagactgcccctgccagggaccctt
accattttctccccccatttgcagacaggattgggtatgcctctcgattt
tgctgacgtgaccctgatatgtcagccgcttgtgacgcggtaccaatgtc
tggctgctacttatgtggatgctcctcatcctctattgcagggaacatag
ggccctcgatggatgagctggagaactccccagggacttcttgggtctgc
aaccctataggagaaacagcaatatgaactagcccctggccctgatttcg
tgtctctagttgcatatgtgatgtaaacatggcataataggaaggaatag
gctaggagaggcccttggtcttgcaaagattatgatgcccctgtactggg
gaacaccagggcttgataagaccgaagatgtgggtcgcggagcaacatcg
taatgtcaagcagacctcaactctggaatatagtgatggtggaattcagt
tgccactatatctggttgacactcagatagagaatgacaatatataagtt
ctagagcagtgagtaggaggcaatgaggagacttgggaggaaccagaata
acctgagtgataaagaaactataacacaccaagaagtggaggtggatctt
caggtgaagcttgcctctatgttctcataatatagtttcattgtcacacc
aaactaagttacaaaacttacccatcaaagacaaaatttagagtgtcaga
gaatcggtacagctcaaaaatacacagaataaatgactgtcctgtgatgg
gaaatccaataattatatcctcttccctgaaaggctcaggaaaacatcat
ggaagatgtggcagaaaagaattgttaaaagcttaactttcttaaggttt
attcctaatattagcttttttctagaccatgggaggaatcctgtccttgg
atgcaatctcaccgttcatggcttgtggtgaatcaagtccaacagtccac
attggactgccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13329447_13330115
seq2: B6Ng01-248A15.b_368_1036 (reverse)

seq1  CCCAGCCAAAC-TCTCAATTACTATAGATGGAGAAATC-AAAGTATTCCA  48
      ||||||||||| |||||||||| |||||||  |||||| | |||||||||
seq2  CCCAGCCAAACATCTCAATTACGATAGATGAGGAAATCTAGAGTATTCCA  50

seq1  TGACAAAACCAAATTCATA-CATTATCTGTCCACGAATCTAGTCCTTCAA  97
       ||||||| |||||||| |  || |||| ||||||| || || |||||||
seq2  CGACAAAA-CAAATTCACATAATAATCTCTCCACGAGTCCAGCCCTTCAA  99

seq1  AGGATAATAACAGAAAAAAAAAACAATAAAAGGACGGAAACCACATCCTA  147
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  AGGATAATAACAGAAAAAAAAACCAATACAAGGACGGAAACCACATCCTA  149

seq1  GAAAAAGCAAG-AAGGTAATCCCTCAACAAAACTAAAAGAAGACAGCCAC  196
      |||||   ||| |||||||||||||| | ||||||| || ||| ||||||
seq2  GAAAATAAAAGAAAGGTAATCCCTCATC-AAACTAAGAG-AGAAAGCCAC  197

seq1  AAGAACAGAAGGCCAACTTTAACAACAAAAATAATAGGAAGCAACAATTA  246
      |||||||||| ||||||||||| ||||||||||| |||||||||||||||
seq2  AAGAACAGAATGCCAACTTTAA-AACAAAAATAACAGGAAGCAACAATTA  246

seq1  CCTTTCCTTAATATCTCTTAATATCAATGAGCTCAACTCCCCAATAAAAA  296
      | ||||| |||||||||||||||||||||  |||||||||||||||||||
seq2  CTTTTCCATAATATCTCTTAATATCAATGGACTCAACTCCCCAATAAAAA  296

seq1  GACATAGACTAACAGACTGGCTACACAAACAGGA-CCCAACATTTTGCTG  345
      | |||||||||||| |||||||||||||||| || || ||||||||||||
seq2  GGCATAGACTAACAAACTGGCTACACAAACAAGATCCAAACATTTTGCTG  346

seq1  CTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTATCTCAGAATGA  395
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  CTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCGGAATGA  396

seq1  AAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACATGCTGGA  445
      |||||||||||||||| || |||||||||||| ||||||||||  |||||
seq2  AAGGCTGGAAAACAATATTACAAGCAAATGGTCTGAAGAAACAATCTGGA  446

seq1  GTAGCCATTCTAATATCTAATAAAATCGACTTCCAACCCAAAGTCATCAA  495
      |||||||||||||||||||| ||||| ||||||||||||||| | |||||
seq2  GTAGCCATTCTAATATCTAACAAAATGGACTTCCAACCCAAAATAATCAA  496

seq1  AAAAGACAAGGAGGGGCACTTCATACTCATCAAAGGTAAAAATCCTCCAA  545
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAAGACAAGGAGGGGCACTTCATACTCATCAAAGGT-AAAATCCTCCAA  545

seq1  GATGAACTATCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCAC  595
      || ||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCAC  595

seq1  ATTCATTAAAGAAACTTTAGAAAAGCTCAAAGCACACATTGCACCTCACA  645
      |||||||||||||||||||| |||||||||||||||||||| | |||| |
seq2  ATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGTAACTCAAA  645

seq1  CAATAATAGTGGGAGACTTCAACA  669
      ||||||||||||||||||||||||
seq2  CAATAATAGTGGGAGACTTCAACA  669

seq1: chr4_68254386_68254968
seq2: B6Ng01-248A15.g_626_1228

seq1  CTTGATAAGACCCAAGATATAAGTCTCTATACCACATCATAATGTCAAGC  50
      |||||||||||| ||||| |  ||| |    | ||||| |||||||||||
seq2  CTTGATAAGACCGAAGATGTGGGTCGCGGAGCAACATCGTAATGTCAAGC  50

seq1  AGACCTCAACTCTGGAATATAGTGATGGTGGAATTCAGTTGCCACTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCAACTCTGGAATATAGTGATGGTGGAATTCAGTTGCCACTATAT  100

seq1  CTGGTTGACACTCAGATAGAGAATGACAATATATAAGTTCTAGAGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGACACTCAGATAGAGAATGACAATATATAAGTTCTAGAGCAGTG  150

seq1  AGTAGGAGGCAATGAGGAGACTTGGGAGGAACCAGAATAACCTGAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAGGCAATGAGGAGACTTGGGAGGAACCAGAATAACCTGAGTGAT  200

seq1  AAAGAAACTATAACACACCAAGAAGTGGAGGTGGATCTTCAGGTGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACTATAACACACCAAGAAGTGGAGGTGGATCTTCAGGTGAAGCT  250

seq1  TGCCTCTATGTTCTCATAATATAG-TTCATTGTCACACCAAACTAAGTTA  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCCTCTATGTTCTCATAATATAGTTTCATTGTCACACCAAACTAAGTTA  300

seq1  CAAAACTTA-CCATCAAAGACAAAATTTAGAGTGTCAGAGAATCGTAACA  348
      ||||||||| |||||||||||||||||||||||||||||||||||  |||
seq2  CAAAACTTACCCATCAAAGACAAAATTTAGAGTGTCAGAGAATCGGTACA  350

seq1  GCTC-AAAATACACAGAATAAATGACTGTCCTGTGATGGGAAATCC-ATA  396
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTCAAAAATACACAGAATAAATGACTGTCCTGTGATGGGAAATCCAATA  400

seq1  A-TATAT-CTCTT-CCTGAAAGGCTCAGGAAAACATCATGGAAGAAGGTG  443
      | ||||| ||||| ||||||||||||||||||||||||||||||| |  |
seq2  ATTATATCCTCTTCCCTGAAAGGCTCAGGAAAACATCATGGAAGATGTGG  450

seq1  CAG-AAAGA--TGTTAAAAGC-TAAATTTC-TAAGG-TTATT-CTAATA-  485
      ||| |||||  |||||||||| ||| |||| ||||| ||||| |||||| 
seq2  CAGAAAAGAATTGTTAAAAGCTTAACTTTCTTAAGGTTTATTCCTAATAT  500

seq1  TAGC-TTTTTCTAGA-CATGGGAGG-ATCCTGTCCT--GATGCATTCTCA  530
      |||| |||||||||| ||||||||| ||||||||||  |||||| |||||
seq2  TAGCTTTTTTCTAGACCATGGGAGGAATCCTGTCCTTGGATGCAATCTCA  550

seq1  ACGTTCATGG-TTGT-GTG-ATCAAGTTCAAACCAGTTCACATTGAAACT  577
       ||||||||| |||| ||| ||||||| |||  |||| |||||||  |||
seq2  CCGTTCATGGCTTGTGGTGAATCAAGTCCAA--CAGTCCACATTG-GACT  597

seq1  GCCATG  583
      ||||||
seq2  GCCATG  603