BAC Information

Click to search

BAC

Clone NameB6Ng01-251B05
Chromosome15 (Build37)
Map Location 32,187,814 - 32,331,312
singlet/doubletdoublet
Overlap geneSema5a
Upstream geneDap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251B05.bB6Ng01-251B05.g
ACCGA058441GA058442
length1,1231,084
definitionB6Ng01-251B05.b B6Ng01-251B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,187,814 - 32,188,944)(32,330,222 - 32,331,312)
sequence
gaattcctcggtcccatcaccagcttgtgaagagaaatcattcaggagag
agcgagctggcaaggaagagtctcggagattcattcacttgaaagcctac
gcctgcctgcaaatggtatttaactcaagcagttcctccagggccacctg
ctgagtttccatctcctggaggtttattttggtacttgggaaagccaggg
aaggacttgcagtggggaacatactggacacatccgagaggcaagactta
gcagcaaggcttttagggtttcacactcacggcgtcggagcaatgtcagt
ccgttttccattaccttaatgtaatatacaagactgggtaacttagtaat
aaaagaagttatggttctagagatataaggatgtgtcaccagggaggttt
ggcactaatgagaaccttatgataggtagtatcataatggtggaagaaat
tagacaggaagttgcagccttgggaggagccaacagaaacctccatcgct
taaagatcctacttcctttacatcaccacagggaagatcaggctacttca
tcccattcttgcctggtgtttagtttttgcaactgtaaacaggagacatt
aagacatcatggtgctgtaccccaataataaaacacctagaagacatttc
ttaaaggaacagatacacatttttcactatttcttaaatgtatatgaaag
gagattaatggttggaatttgggccaagggtagagaggaaattgacttcc
ctggtttgtagagaatatatcctgaaattctgatgggaggaggcatttct
gtgtgttgatatcatatggaaaaaagaggatgttttcatgtagattgaaa
tagaaaacatatacttcagtgcacaccttggggtcccagttctggttggt
gaagaggagcaggagagactggaacacagaacacctgacaggtggtcttc
atttgatctgtgtgaatgactgcccttgagaatatcctagaaacacacac
acacacacacacacacacacacacacactcactcacgctcactcacaaat
tttcctcactgtatctaattccttgttctgttctactagaaaagaatcag
ctctccagtgtcatattatactg
gaattcaatgaagagttggtaaagccataacactaagttaacatagtgtt
ccagccaaatagctatcctgacatgtatccaaaatcatgactggacacta
ttattacagaaatgcatggagattaaattaaagcttccatgcgctttgtt
gatcgtaaagggggaatcaggttggccatgacacattaaaccttcaattt
ttatgtacattgaacaaaaatatcaaacacttttgtattgttttaatgca
tgcaccctaactgtcaaggttcagcctaaagcaattttccatacatgatt
agtgaaatgactttaggaatatgttaacctaaaaacacttatcagactta
tacagagaatgacaacaggctgccaccctcagctattgaataggaacaga
ctgttatccagagagttccaccatatatgaactccgatgaggaggaattt
tatggctatataaaataaccttatagtataaaatggggaaaagaaaacat
taaacgattttatacatttcagtaatagttcagctccagtgaccttattt
tatacctctcttcaaatggaattgttattacgctcttgcttccttccccc
tgtttagctctagattgccccgaggaatgataaaaataaatggagtccat
tagataaaattattatttgctcaaagacaatattaattttatctgtcagc
aggttttaaaactaagtgaaagttcatccattctgcttctgttagctaga
ccaacaagagcattttctggggaaaaaaatatacttaagtaatggagact
tcaggcaacatagccatatgaacaatttctaaaggacttacgcagcttcc
ttttctaaggcaagaaaatcatatggcccattacagtaatcatgctgtaa
gtgactctcagtagtgcaatagtacaggtcacaggccacacagggacagc
accttctcctgacatcactatgtgtattcttttatagacatgcagacaga
ttgccacgtctgggagaaaaaaccgtgtgggttcacagcactagtctctg
tttgacttgcacatgccagtgatctatgtactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32187814_32188944
seq2: B6Ng01-251B05.b_47_1169

seq1  GAATTCCTCGGTCCCATCACCAGCTTGTGAAGAGAAATCATTCAGGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGGTCCCATCACCAGCTTGTGAAGAGAAATCATTCAGGAGAG  50

seq1  AGCGAGCTGGCAAGGAAGAGTCTCGGAGATTCATTCACTTGAAAGCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGCTGGCAAGGAAGAGTCTCGGAGATTCATTCACTTGAAAGCCTAC  100

seq1  GCCTGCCTGCAAATGGTATTTAACTCAAGCAGTTCCTCCAGGGCCACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTGCAAATGGTATTTAACTCAAGCAGTTCCTCCAGGGCCACCTG  150

seq1  CTGAGTTTCCATCTCCTGGAGGTTTATTTTGGTACTTGGGAAAGCCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTCCATCTCCTGGAGGTTTATTTTGGTACTTGGGAAAGCCAGGG  200

seq1  AAGGACTTGCAGTGGGGAACATACTGGACACATCCGAGAGGCAAGACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTGCAGTGGGGAACATACTGGACACATCCGAGAGGCAAGACTTA  250

seq1  GCAGCAAGGCTTTTAGGGTTTCACACTCACGGCGTCGGAGCAATGTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGGCTTTTAGGGTTTCACACTCACGGCGTCGGAGCAATGTCAGT  300

seq1  CCGTTTTCCATTACCTTAATGTAATATACAAGACTGGGTAACTTAGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTCCATTACCTTAATGTAATATACAAGACTGGGTAACTTAGTAAT  350

seq1  AAAAGAAGTTATGGTTCTAGAGATATAAGGATGTGTCACCAGGGAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTTATGGTTCTAGAGATATAAGGATGTGTCACCAGGGAGGTTT  400

seq1  GGCACTAATGAGAACCTTATGATAGGTAGTATCATAATGGTGGAAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAATGAGAACCTTATGATAGGTAGTATCATAATGGTGGAAGAAAT  450

seq1  TAGACAGGAAGTTGCAGCCTTGGGAGGAGCCAACAGAAACCTCCATCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGGAAGTTGCAGCCTTGGGAGGAGCCAACAGAAACCTCCATCGCT  500

seq1  TAAAGATCCTACTTCCTTTACATCACCACAGGGAAGATCAGGCTACTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCCTACTTCCTTTACATCACCACAGGGAAGATCAGGCTACTTCA  550

seq1  TCCCATTCTTGCCTGGTGTTTAGTTTTTGCAACTGTAAACAGGAGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCTTGCCTGGTGTTTAGTTTTTGCAACTGTAAACAGGAGACATT  600

seq1  AAGACATCATGGTGCTGTACCCCAATAATAAAACACCTAGAAGACATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCATGGTGCTGTACCCCAATAATAAAACACCTAGAAGACATTTC  650

seq1  TTAAAGGAACAGATACACATTTTTCACTATTTCTTAAATGTATATGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAACAGATACACATTTTTCACTATTTCTTAAATGTATATGAAAG  700

seq1  GAGATTAATGGTTGGAATTTGGGCCAAGGGTAGAGAGGAAATTGACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAATGGTTGGAATTTGGGCCAAGGGTAGAGAGGAAATTGACTTCC  750

seq1  CTGGTTTGTAGAGAATATATCCTGAAATTCTGATGGGAGGAGGCATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGTAGAGAATATATCCTGAAATTCTGATGGGAGGAGGCATTTCT  800

seq1  GTGTGTTGATATCATATGGAAAAAAGAGGATGTTTTCATGTAGATTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGATATCATATGGAAAAAAGAGGATGTTTTCATGTAGATTGAAA  850

seq1  TAGAAAACATATACTTCAGGTGCACACCTTGGGGTCCCAGTTCTGGTTGG  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGAAAACATATACTTCA-GTGCACACCTTGGGGTCCCAGTTCTGGTTGG  899

seq1  TGAAGAGGAGCAGGAGAGACTGGAACACAGAACACCTGACAGGTGGTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGAGCAGGAGAGACTGGAACACAGAACACCTGACAGGTGGTCTT  949

seq1  CATTTGATCTGTGTGAATGACTG-CCTTGAGAATATCCTAGAAACACACA  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATTTGATCTGTGTGAATGACTGCCCTTGAGAATATCCTAGAAACACACA  999

seq1  CACACACACACACACACACACACACACACACACACACACTCACTCACAAA  1049
      ||||||||||||||||||||||||||||| ||| ||| ||||||||||||
seq2  CACACACACACACACACACACACACACACTCACTCACGCTCACTCACAAA  1049

seq1  TTTTCCTCACTGTATCTAAATTCCTTGTTCTGTTTTCCTACTAGGAAAAG  1099
      ||||||||||||||||| ||||||||||||||||   |||||| ||||||
seq2  TTTTCCTCACTGTATCT-AATTCCTTGTTCTGTT---CTACTA-GAAAAG  1094

seq1  AATCAGGCTCTCCCAGTGGTCATATTATACTG  1131
      ||||| ||||| ||||| ||||||||||||||
seq2  AATCA-GCTCT-CCAGT-GTCATATTATACTG  1123

seq1: chr15_32330222_32331312
seq2: B6Ng01-251B05.g_65_1148 (reverse)

seq1  CCAGTTACATAAGATCACT-GCATGTGCCAGTCAAACAGAGACTAGTGCT  49
      |||| ||||| |||||||| |||||||| |||||||||||||||||||||
seq2  CCAG-TACAT-AGATCACTGGCATGTGCAAGTCAAACAGAGACTAGTGCT  48

seq1  GTTGAACCCACAACGGTTTTTTCTCCCAGACGTGGCAATCTGTTCTTGCA  99
      | ||||||||| |||||||||||||||||||||||||||||||   ||||
seq2  G-TGAACCCAC-ACGGTTTTTTCTCCCAGACGTGGCAATCTGT--CTGCA  94

seq1  TGTTCTTATAAAGAATACACATAGTGATTGTCAGGAGAAGGTGCTGTCCC  149
      || |||   |||||||||||||||||| ||||||||||||||||||||||
seq2  TG-TCTATAAAAGAATACACATAGTGA-TGTCAGGAGAAGGTGCTGTCCC  142

seq1  TGTGTGGCCTGTGACCTGTACTATTGCACTACTGAGAGTCACTTACAGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCCTGTGACCTGTACTATTGCACTACTGAGAGTCACTTACAGCA  192

seq1  TGATTACTGTAATGGGCCATATGATTTTCTTGCCTTAGAAAAGGAAGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTGTAATGGGCCATATGATTTTCTTGCCTTAGAAAAGGAAGCTG  242

seq1  CGTAAGTCCTTTAGAAATTGTTCATATGGCTATGTTGCCTGAAGTCTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGTCCTTTAGAAATTGTTCATATGGCTATGTTGCCTGAAGTCTCCA  292

seq1  TTACTTAAGTATATTTTTTTCCCCAGAAAATGCTCTTGTTGGTCTAGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAAGTATATTTTTTTCCCCAGAAAATGCTCTTGTTGGTCTAGCTA  342

seq1  ACAGAAGCAGAATGGATGAACTTTCACTTAGTTTTAAAACCTGCTGACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCAGAATGGATGAACTTTCACTTAGTTTTAAAACCTGCTGACAG  392

seq1  ATAAAATTAATATTGTCTTTGAGCAAATAATAATTTTATCTAATGGACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAATATTGTCTTTGAGCAAATAATAATTTTATCTAATGGACTC  442

seq1  CATTTATTTTTATCATTCCTCGGGGCAATCTAGAGCTAAACAGGGGGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTTTATCATTCCTCGGGGCAATCTAGAGCTAAACAGGGGGAAG  492

seq1  GAAGCAAGAGCGTAATAACAATTCCATTTGAAGAGAGGTATAAAATAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGAGCGTAATAACAATTCCATTTGAAGAGAGGTATAAAATAAGG  542

seq1  TCACTGGAGCTGAACTATTACTGAAATGTATAAAATCGTTTAATGTTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAGCTGAACTATTACTGAAATGTATAAAATCGTTTAATGTTTTC  592

seq1  TTTTCCCCATTTTATACTATAAGGTTATTTTATATAGCCATAAAATTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCATTTTATACTATAAGGTTATTTTATATAGCCATAAAATTCCT  642

seq1  CCTCATCGGAGTTCATATATGGTGGAACTCTCTGGATAACAGTCTGTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCGGAGTTCATATATGGTGGAACTCTCTGGATAACAGTCTGTTCC  692

seq1  TATTCAATAGCTGAGGGTGGCAGCCTGTTGTCATTCTCTGTATAAGTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATAGCTGAGGGTGGCAGCCTGTTGTCATTCTCTGTATAAGTCTG  742

seq1  ATAAGTGTTTTTAGGTTAACATATTCCTAAAGTCATTTCACTAATCATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTTTTTAGGTTAACATATTCCTAAAGTCATTTCACTAATCATGT  792

seq1  ATGGAAAATTGCTTTAGGCTGAACCTTGACAGTTAGGGTGCATGCATTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATTGCTTTAGGCTGAACCTTGACAGTTAGGGTGCATGCATTAA  842

seq1  AACAATACAAAAGTGTTTGATATTTTTGTTCAATGTACATAAAAATTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACAAAAGTGTTTGATATTTTTGTTCAATGTACATAAAAATTGAA  892

seq1  GGTTTAATGTGTCATGGCCAACCTGATTCCCCCTTTACGATCAACAAAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATGTGTCATGGCCAACCTGATTCCCCCTTTACGATCAACAAAGC  942

seq1  GCATGGAAGCTTTAATTTAATCTCCATGCATTTCTGTAATAATAGTGTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAAGCTTTAATTTAATCTCCATGCATTTCTGTAATAATAGTGTCC  992

seq1  AGTCATGATTTTGGATACATGTCAGGATAGCTATTTGGCTGGAACACTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGATTTTGGATACATGTCAGGATAGCTATTTGGCTGGAACACTAT  1042

seq1  GTTAACTTAGTGTTATGGCTTTACCAACTCTTCATTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTAGTGTTATGGCTTTACCAACTCTTCATTGAATTC  1084