BAC Information

Click to search

BAC

Clone NameB6Ng01-251D07
Chromosome15 (Build37)
Map Location 20,116,783 - 20,117,947
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251D07.bB6Ng01-251D07.g
ACCGA058537GA058538
length1,2091,166
definitionB6Ng01-251D07.b B6Ng01-251D07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaatgt
tcaacattcttaatcatcagggaaatgcaaatcaaaacaaccctgagatt
cgacctcacaccagtcagatcaaaaattcaggtgacagcagatgctggcg
aggatgtggagaaagaggaacactcctccattgttggtgggattgcaagc
ttgtacaaccactctggaaatcagtctggtggttcctcagaaatttggac
atagtactaccagaggatcccacaatacctctcctgggcatatatccaga
agatgttccaaccggtaagaaagacacatgctccactatgttcattgcag
ccttatttataatagccagaagctagaaagaacccagatgcccctcaaca
gaggaatggatacaaaaaatgtggtacatttacacaatggaggactactc
agctattaaaaagaatgaatttatgaaattcctaggcgaatagatggacc
tggagggcatcatcttgagtgaggtaacccaatcacaaaagaactcacat
gagatgtactcacggataagtggatattaacccagaaacttagaatactc
aacatataagatacaatttgtgaaacacatgaaactcaagaagaatgaag
accaaagtgtggacactttgccccttcttggaattgggaagaaaactctc
atggaagcagttacagagacaaagtttggagctgagacaaaaggatggac
catctagagactatcatatccggggatctttcccataatcaggttccaaa
cgctgacaacattgcatacactagtaagattttgctgaaaggactcagat
atggctgtctcttgtgagactatgctggggcctggcaaacacagaagtgg
atgctcacagtcagctattggattgatcacagggcccccaatggaggagc
tagagaaagtaacaaggaactaaagggatctgccatcctatagtggaaca
acaatatgaactaaccaatacccccactagagctcatgtctctagctgca
tatgaatcagaagatggcctagtaggccatcagtgaaaggagagccccag
tggatgtgcaacttatattgcttcagtacaggggaaacgtcaggccagat
tggagtggggtgaatagggcggagacgtgtatcgtgcctgacgcactcgc
tacgatcgc

gaattctcaattgtggctattcttgaagcctattcttgaagcctaaaata
tccttctaatcctccatactattcatctgcaatcaactattatgtgcctg
catttttaatacccaatatatgttttaatatttaagaaatgagtacaaac
attagaatattcacttcgcagtgattttaaaataaaagtaccatacactt
atttatcaattaattcttttttctggagtgaaaagtggtgtttcattcct
gcaaatgctattgtcttctattgtaactcagagattaatactctacattg
atttcaagtagtttacagtggttctcaagctaatctcattaggagtaaat
taggtgtgaaatcttgcagaaggcaggatcagagaagttatcaaactttc
ctattttaattttttgtttgttccacaaatgaaatgtgtacaataagcat
aatgcgttatattcttgttgttagtatgtattatgagcactttgattata
aatgtctactttgtgaaaatgaaatattttacatatatacagatctctat
aaactatatacatatgtacatatatagtttatagagttttttgttatagg
aataggagacaattgaaagggtacaggttgttgaaatacagtacaatgca
tatgctttgggaaagtcaatcacattatggttttcaaagcacttccttca
acatagttgtatatgaaacataggttatttaataaaaacattaaacataa
cctttggaaactaattaatcaactaatgaatcaacacatgaaaaatatag
caagggattgatcaatgctgtaataataaatagttaaatataagcatgtt
ttagatttaaagaaaaggaatattcacaattcatggtgaattgtcattaa
tcttctcatcttcatgtatcacaacatcgacaaacattttcactttactt
gttatatgtagggtaattatttttctgtatagcacagtaactatactagt
attgtagtatgatttattatttattttattttaattgaaatttatgtttc
aaattactatttatattattatgatattttatcacataaaaatgatgtta
acaatgccaatttaattataaactcagaacacaatgataatggaaaaatt
ataatccttgattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20116783_20117947
seq2: B6Ng01-251D07.g_69_1234

seq1  GAATTCTCAATTGTGGCTATTCTTGAAGCCTATTCTTGAAGCCTAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATTGTGGCTATTCTTGAAGCCTATTCTTGAAGCCTAAAATA  50

seq1  TCCTTCTAATCCTCCATACTATTCATCTGCAATCAACTATTATGTGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAATCCTCCATACTATTCATCTGCAATCAACTATTATGTGCCTG  100

seq1  CATTTTTAATACCCAATATATGTTTTAATATTTAAGAAATGAGTACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAATACCCAATATATGTTTTAATATTTAAGAAATGAGTACAAAC  150

seq1  ATTAGAATATTCACTTCGCAGTGATTTTAAAATAAAAGTACCATACACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATATTCACTTCGCAGTGATTTTAAAATAAAAGTACCATACACTT  200

seq1  ATTTATCAATTAATTCTTTTTTCTGGAGTGAAAAGTGGTGTTTCATTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCAATTAATTCTTTTTTCTGGAGTGAAAAGTGGTGTTTCATTCCT  250

seq1  GCAAATGCTATTGTCTTCTATTGTAACTCAGAGATTAATACTCTACATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCTATTGTCTTCTATTGTAACTCAGAGATTAATACTCTACATTG  300

seq1  ATTTCAAGTAGTTTACAGTGGTTCTCAAGCTAATCTCATTAGGAGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGTAGTTTACAGTGGTTCTCAAGCTAATCTCATTAGGAGTAAAT  350

seq1  TAGGTGTGAAATCTTGCAGAAGGCAGGATCAGAGAAGTTATCAAACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGAAATCTTGCAGAAGGCAGGATCAGAGAAGTTATCAAACTTTC  400

seq1  CTATTTTAATTTTTTGTTTGTTCCACAAATGAAATGTGTACAATAAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAATTTTTTGTTTGTTCCACAAATGAAATGTGTACAATAAGCAT  450

seq1  AATGCGTTATATTCTTGTTGTTAGTATGTATTATGAGCACTTTGATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGTTATATTCTTGTTGTTAGTATGTATTATGAGCACTTTGATTATA  500

seq1  AATGTCTACTTTGTGAAAATGAAATATTTTACATATATACAGATCTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTACTTTGTGAAAATGAAATATTTTACATATATACAGATCTCTAT  550

seq1  AAACTATATACATATGTACATATATAGTTTATAGAGTTTTTTGTTATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATATACATATGTACATATATAGTTTATAGAGTTTTTTGTTATAGG  600

seq1  AATAGGAGACAATTGAAAGGGTACAGGTTGTTGAAATACAGTACAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGACAATTGAAAGGGTACAGGTTGTTGAAATACAGTACAATGCA  650

seq1  TATGCTTTGGGAAAGTCAATCACATTATGGTTTTCAAAGCACTTCCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTGGGAAAGTCAATCACATTATGGTTTTCAAAGCACTTCCTTCA  700

seq1  ACATAGTTGTATATGAAACATAGGTTATTTAATAAAAACATTAAACATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTGTATATGAAACATAGGTTATTTAATAAAAACATTAAACATAA  750

seq1  CCTTTGGAAACTAATTAATCAACTAATGAATCAACACATGAAAAATATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAAACTAATTAATCAACTAATGAATCAACACATGAAAAATATAG  800

seq1  CAAGGGATTGATCAATGCTGTAATAATAAATAGTTAAATATAAGCATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGATTGATCAATGCTGTAATAATAAATAGTTAAATATAAGCATGTT  850

seq1  TTAGATTTAAAGAAAAGGAATATTCACAATTCATGGTGAATTGTCATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTAAAGAAAAGGAATATTCACAATTCATGGTGAATTGTCATTAA  900

seq1  TCTTCTCATCTTCATGTATCAC-ACATCGACAAACATTTTCACTTTACTT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTTCTCATCTTCATGTATCACAACATCGACAAACATTTTCACTTTACTT  950

seq1  GTTATATGTA-GGTAATTATTTTTCTGTATAGCACAGTAACTATACTAGT  998
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGTAGGGTAATTATTTTTCTGTATAGCACAGTAACTATACTAGT  1000

seq1  ATTGTAGTATGATTTATTATTTATTTTATTTTAAATTGAAATTTATGTTT  1048
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTGTAGTATGATTTATTATTTATTTTATTTT-AATTGAAATTTATGTTT  1049

seq1  CAAATTACTATATATAAATTATTATGAATATTTTATCACATAAAATGGAT  1098
      ||||||||||| |||  ||||||||| ||||||||||||||||||  |||
seq2  CAAATTACTATTTAT--ATTATTATG-ATATTTTATCACATAAAAATGAT  1096

seq1  GTTAACAATG-CAATTTAA-TATAAACTCAAGAACACAAATGATAATTGA  1146
      |||||||||| |||||||| ||||||||| ||||||| ||||||||| ||
seq2  GTTAACAATGCCAATTTAATTATAAACTC-AGAACAC-AATGATAATGGA  1144

seq1  AAA--TATAAT-CTTGAATTTT  1165
      |||  |||||| ||||| ||||
seq2  AAAATTATAATCCTTGATTTTT  1166


| Home | SequenceCutter | Blast | Download |