BAC Information

Click to search

BAC

Clone NameB6Ng01-259M11
Chromosome15 (Build37)
Map Location 15,636,838 - 15,638,017
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040024, LOC100040033, LOC100040046
Downstream geneEG239341, LOC100040087, LOC624183, LOC100040119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259M11.bB6Ng01-259M11.g
ACCGA064873GA064874
length1,2421,173
definitionB6Ng01-259M11.b B6Ng01-259M11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttagatctgcctgtggcccccatgttttaatttaattat
tttgtctattgatatctagtttattatttattgggtattttgtttattta
catttcaaatagtatctcccttcccattttcctctccacaaacccctctc
ccagaagtcctcctgtcaaaaggaaacacagggacaaacagtagagatct
agtttcttcagttctttatatatttttaatatcagctttcctcatattca
aagttgatgaaaatcttgtccaatactctaggctattggtttatcaaatg
gatggtttccttggctaacagaatcttttcaggtttatttcaatgtcatg
taggttccatttattaattgctaagtttggtgcctgcactatcatgttca
gttcataaaatcatctcctatgccaatgtgttcaagggtattttcccatt
tcttttcaattgggttcagtgtgtctgtattaaagtttgatcctcttgga
cttgtgttttctgcaggataataatgatgcatcagtttgcactgtttttc
atatagacatccagttttaccagcaccatttgctgaaaaagctgcttttc
ttccagtatgtttatttctggcttctttatcaaaaatcatgtctccatat
gtgtgttgattgatgtctggatctttgcttctactcagttgatcaatact
gtatatttttatgagcacattatgtcatttttactactatagcgcttggt
acacatgaaatcaggaatgatgttatctccctggattttcattgttcagg
gttgtcttagatatcttggtgtcacttttgtttttgcttttgttccgatt
tcatatacagttcagaattttcctttttaagtccatgaagaacagtgttg
gaattttgatggggattaggttgaatctaattagactgcatttcataaga
tgggccatttttgctatgtgaatcctacatgagcatggagatcttttcca
tcttatgatagctttttttattttcttttcagcaaacaccttaatgtttt
actatactaatctttcctgctggattaaagttacttccagaatattttat
tatcattggaaggccaagcccagtcttaaatattgtaaccttttatccag
aagaataagctccatatatggtttgcctaatatctctttaccattgactg
ggagtgtaaagaatctgggaatgagtgagaatatcactccct

gaattccaggatgggtgatctctatgttaatctgtggggacaaagcacat
tatggggaattccaggatgggtgatctctatgttaatatgtggggacatt
gaagaattattaccaggggtggaaactattgctgaggaagactggtaatt
attgctgaggtctggaaactgctactgacccattgtctctgcctcaggcc
aggtggcgggtcagtctctgatggcatggcagtttctgattagctgcctg
aagcctgggttttttcctgcctggattttagcctagactcccaaccaact
accttgaagcctgccatggagtcagccttgtcttctgaaagtgatgctac
aaaaagtgttccattgtctcattcctgattttagggattaccatcatgcc
aagtcgctgaactgccttcaaagtgtgtgaaaaccacatgcttctcatgg
ggctcagtctgtcactcttctgtcaacagggctgtctggtttgtcttaga
ggtgtgaaatcaaagtatttttctgtttttttgagccaaaacactggaac
tatatacctcttttatacttctctgcacatcctttcctttgttctatgct
atccagctgttatatctctcatattcttgattctcaaacctcacttttat
ttcaaactgcacaataatcttttttaatacacttgctcctcacattccca
gagtcacccaaaggaaatcagtaatccgacatctcactttggatgtcttc
attattttcacaagaaaacttgtaaaatgaatatattttaaccctgcagc
atgaattcagacagttttgatacatagtactccagaggtagaagccaaga
gatttttgaatctatacaaaggaaaatatctactaccatgtttgagagca
tcgtgtcaaattcagtacaaaattaaatgaaccggaaatggaaatgtgtc
agaaatatttagggcaataattaaaggcaaacattcaaacattttactca
gtctttgattcagagctagatcatcaaagtatgagcattacaagctacta
ggtagatatggagtaacttgaaaactgaaaaatcagaaaaaaaacaacag
ccatagactgttcttttattacaaatccattaaaattagaagtcctaaat
acagttatgcaggtcattaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_15636838_15638017
seq2: B6Ng01-259M11.g_66_1238 (reverse)

seq1  CCTTT-ATGACCTTGGCATAA-TGTATTTGGGGATTTTTCTAATTTTTAA  48
      ||||| |||||||  |||||| ||||||| ||     |||||||||| | 
seq2  CCTTTAATGACCT--GCATAACTGTATTTAGG---ACTTCTAATTTTAAT  45

seq1  TGATTTGTAATAAAAGAACAGTCTATGCTTGTTG--TTTTTTCTGATTTT  96
       ||||||||||||||||||||||||||  |||||  ||||||||||||||
seq2  GGATTTGTAATAAAAGAACAGTCTATGGCTGTTGTTTTTTTTCTGATTTT  95

seq1  TCAGTTTTTCAAGTTACTCCATATCTACCTAGTAGCTTGTAATTGCTCAT  146
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAG-TTTTCAAGTTACTCCATATCTACCTAGTAGCTTGTAA-TGCTCAT  143

seq1  ACTTTGATGATCTAGCTCTGAAATCAAAGACTGAGTAAAATGTTTGAATG  196
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTTTGATGATCTAGCTCTG-AATCAAAGACTGAGTAAAATGTTTGAATG  192

seq1  TTTGCCTTTAAATTATTTGCCCTAAAATATTTCCTGACACA-TTCCATTT  245
      ||||||||| ||||| ||||||| |||||||| |||||||| ||||||||
seq2  TTTGCCTTT-AATTA-TTGCCCT-AAATATTT-CTGACACATTTCCATTT  238

seq1  CCGGTTCATTTAATTTTGTACTGAATTTGACACGATGCTCTCAAACATGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTCATTTAATTTTGTACTGAATTTGACACGATGCTCTCAAACATGG  288

seq1  TAGTAGATATTTTCCTTTGTATAGATTCAAAAATCTCTTGGCTTCTACCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATATTTTCCTTTGTATAGATTCAAAAATCTCTTGGCTTCTACCT  338

seq1  CTGGAGTACTATGTATCAAAACTGTCTGAATTCATGCTGCAGGGTTAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTACTATGTATCAAAACTGTCTGAATTCATGCTGCAGGGTTAAAA  388

seq1  TATATTCATTTTACAAGTTTTCTTGTGAAAATAATGAAGACATCCAAAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATTTTACAAGTTTTCTTGTGAAAATAATGAAGACATCCAAAGT  438

seq1  GAGATGTCGGATTACTGATTTCCTTTGGGTGACTCTGGGAATGTGAGGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCGGATTACTGATTTCCTTTGGGTGACTCTGGGAATGTGAGGAG  488

seq1  CAAGTGTATTAAAAAAGATTATTGTGCAGTTTGAAATAAAAGTGAGGTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTATTAAAAAAGATTATTGTGCAGTTTGAAATAAAAGTGAGGTTT  538

seq1  GAGAATCAAGAATATGAGAGATATAACAGCTGGATAGCATAGAACAAAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCAAGAATATGAGAGATATAACAGCTGGATAGCATAGAACAAAGG  588

seq1  AAAGGATGTGCAGAGAAGTATAAAAGAGGTATATAGTTCCAGTGTTTTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGTGCAGAGAAGTATAAAAGAGGTATATAGTTCCAGTGTTTTGG  638

seq1  CTCAAAAAAACAGAAAAATACTTTGATTTCACACCTCTAAGACAAACCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAAACAGAAAAATACTTTGATTTCACACCTCTAAGACAAACCAG  688

seq1  ACAGCCCTGTTGACAGAAGAGTGACAGACTGAGCCCCATGAGAAGCATGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTGTTGACAGAAGAGTGACAGACTGAGCCCCATGAGAAGCATGT  738

seq1  GGTTTTCACACACTTTGAAGGCAGTTCAGCGACTTGGCATGATGGTAATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCACACACTTTGAAGGCAGTTCAGCGACTTGGCATGATGGTAATC  788

seq1  CCTAAAATCAGGAATGAGACAATGGAACACTTTTTGTAGCATCACTTTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATCAGGAATGAGACAATGGAACACTTTTTGTAGCATCACTTTCA  838

seq1  GAAGACAAGGCTGACTCCATGGCAGGCTTCAAGGTAGTTGGTTGGGAGTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAAGGCTGACTCCATGGCAGGCTTCAAGGTAGTTGGTTGGGAGTC  888

seq1  TAGGCTAAAATCCAGGCAGGAAAAAACCCAGGCTTCAGGCAGCTAATCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAAAATCCAGGCAGGAAAAAACCCAGGCTTCAGGCAGCTAATCAG  938

seq1  AAACTGCCATGCCATCAGAGACTGACCCGCCACCTGGCCTGAGGCAGAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCCATGCCATCAGAGACTGACCCGCCACCTGGCCTGAGGCAGAGA  988

seq1  CAATGGGTCAGTAGCAGTTTCCAGACCTCAGCAATAATTACCAGTCTTCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGTCAGTAGCAGTTTCCAGACCTCAGCAATAATTACCAGTCTTCC  1038

seq1  TCAGCAATAGTTTCCACCCCTGGTAATAATTCTTCAATGTCCCCACATAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATAGTTTCCACCCCTGGTAATAATTCTTCAATGTCCCCACATAT  1088

seq1  TAACATAGAGATCACCCATCCTGGAATTCCCCATAATGTGCTTTGTCCCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGAGATCACCCATCCTGGAATTCCCCATAATGTGCTTTGTCCCC  1138

seq1  ACAGATTAACATAGAGATCACCCATCCTGGAATTC  1180
      |||||||||||||||||||||||||||||||||||
seq2  ACAGATTAACATAGAGATCACCCATCCTGGAATTC  1173


| Home | SequenceCutter | Blast | Download |