BAC Information

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BAC

Clone NameB6Ng01-260L19
Chromosome15 (Build37)
Map Location 22,635,854 - 22,764,053
singlet/doubletdoublet
Overlap geneEG545091
Upstream geneLOC100040351
Downstream geneCdh18, LOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260L19.bB6Ng01-260L19.g
ACCGA065585GA065586
length1,085498
definitionB6Ng01-260L19.b B6Ng01-260L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,635,854 - 22,636,960)(22,763,556 - 22,764,053)
sequence
gaattcagatattggagcgttttgtacctgcaccatcaaataccttggtc
tgattttcaatatccatcctagagatcaatttagcttttgtgattggggt
cacaaacctacaactatctggattgcctcatttttatcctttcttgtact
gattcttcaacgatcaggaataacatagttcccatttccttacatttatc
tttaataagcactattcacaatccaagtaaagtttttgctgactaatatt
tacagctctgcataatgaattgtatcgttgaaccaaattcctgtactgag
acgtgtaacaggttttagctgatattcctttcaccacacatatccttatt
cgttactcatcagttatgaatttctaattcaatgtaaactgaatacatgc
tctcatgttagcactccaagtctctctgctccctagctttatgaaattat
ttgaattaaagaatatgtttctcaatctttcttctgtgtctgtaattatg
gtcaaggaattttcatattgacaatatggaagatatgcatcagaatgtga
agttgacatagtaaactcttagataggcctttgtagagaatagactaaat
atggacttgcaatacattgcatatcatcttattatataaagaatctaata
taaggaatatttatgtttaatgtatgaagaacctataaaaaagtagagat
gaattgactgatcacagtagcagcattcttatatatatatataaattctt
tttattaggtattttcctcatttacatttccaatgctatcccaaaagtcc
cccataccctccccccccccacccccccggcagtattcatagtatctttt
gcattagaggatgacaaatagtctatgattgggttcaacaagctacagtg
agtttatctttcaacctaaatgatgggcagagacatgactttactcgatt
ttacatacttgtatgcaagagctagaaaacaaagagactgagagggcact
gctgctgaacccactgtacacctcaagatgtattattaaatcttccatag
tagaacatcttctgaaatgaatgaaattaattaaa

gaattctcataggtagacacaggttatcaaaaggagaaataacggtaata
gaaaaatagaaaggatataaataataataatatactgttcactgagaggg
gaaggagacataaaaggagaaatgttttttaaaaagtacacaaatactgc
ttctagatccctctgtaagagttgggaggaggatcgaaagagctaaaggg
gatggcaaccctataagaagaccacagtatcaagggaccctggttcccag
agactgagcatccaaccacagagcacacattggctacttcatgcctctcc
ctgcccccaccatatatctagcagaggactgctttgtttggcctcagtga
gagaagatgagtctaatacagtagagacttgatttcccagggaaggggga
tgctgctgttgctgctgctgctactgctgctgttgctggtggtggtggtg
ggtaaatcaatcagggatgggtgttagttgggtaggggtggctggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22635854_22636960
seq2: B6Ng01-260L19.b_46_1130

seq1  GAATTCAGATATTGGAGCGTTTTGTACCTGCACCATCAAATACCTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATATTGGAGCGTTTTGTACCTGCACCATCAAATACCTTGGTC  50

seq1  TGATTTTCAATATCCATCCTAGAGATCAATTTAGCTTTTGTGATTGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCAATATCCATCCTAGAGATCAATTTAGCTTTTGTGATTGGGGT  100

seq1  CACAAACCTACAACTATCTGGATTGCCTCATTTTTATCCTTTCTTGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCTACAACTATCTGGATTGCCTCATTTTTATCCTTTCTTGTACT  150

seq1  GATTCTTCAACGATCAGGAATAACATAGTTCCCATTTCCTTACATTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCAACGATCAGGAATAACATAGTTCCCATTTCCTTACATTTATC  200

seq1  TTTAATAAGCACTATTCACAATCCAAGTAAAGTTTTTGCTGACTAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAGCACTATTCACAATCCAAGTAAAGTTTTTGCTGACTAATATT  250

seq1  TACAGCTCTGCATAATGAATTGTATCGTTGAACCAAATTCCTGTACTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTCTGCATAATGAATTGTATCGTTGAACCAAATTCCTGTACTGAG  300

seq1  ACGTGTAACAGGTTTTAGCTGATATTCCTTTCACCACACATATCCTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTAACAGGTTTTAGCTGATATTCCTTTCACCACACATATCCTTATT  350

seq1  CGTTACTCATCAGTTATGAATTTCTAATTCAATGTAAACTGAATACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACTCATCAGTTATGAATTTCTAATTCAATGTAAACTGAATACATGC  400

seq1  TCTCATGTTAGCACTCCAAGTCTCTCTGCTCCCTAGCTTTATGAAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTTAGCACTCCAAGTCTCTCTGCTCCCTAGCTTTATGAAATTAT  450

seq1  TTGAATTAAAGAATATGTTTCTCAATCTTTCTTCTGTGTCTGTAATTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAAAGAATATGTTTCTCAATCTTTCTTCTGTGTCTGTAATTATG  500

seq1  GTCAAGGAATTTTCATATTGACAATATGGAAGATATGCATCAGAATGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGAATTTTCATATTGACAATATGGAAGATATGCATCAGAATGTGA  550

seq1  AGTTGACATAGTAAACTCTTAGATAGGCCTTTGTAGAGAATAGACTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACATAGTAAACTCTTAGATAGGCCTTTGTAGAGAATAGACTAAAT  600

seq1  ATGGACTTGCAATACATTGCATATCATCTTATTATATAAAGAATCTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTGCAATACATTGCATATCATCTTATTATATAAAGAATCTAATA  650

seq1  TAAGGAATATTTATGTTTAATGTATGAAGAACCTATAAAAAAGTAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATATTTATGTTTAATGTATGAAGAACCTATAAAAAAGTAGAGAT  700

seq1  GAATTGACTGATCACAGTAGGCAGCATTCTTATATATATATATAAATTCT  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTGACTGATCACAGTA-GCAGCATTCTTATATATATATATAAATTCT  749

seq1  TTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTC  799

seq1  CCCCATACCCTCCCCCCCCCC-CCCCCCCGGCAGTATTCATAGTATCTTT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCCATACCCTCCCCCCCCCCACCCCCCCGGCAGTATTCATAGTATCTTT  849

seq1  TGCATTAGA-GATGACAAATAGTCTATGATTGGGTTCAACAAAGCTACAG  898
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TGCATTAGAGGATGACAAATAGTCTATGATTGGGTTCAAC-AAGCTACAG  898

seq1  TGAGTTTATCTTTCAACCTAAATGATGGGGCAGAGGACATGACTTAACTC  948
      |||||||||||||||||||||||||| ||||||| |||||||||| ||||
seq2  TGAGTTTATCTTTCAACCTAAATGAT-GGGCAGA-GACATGACTTTACTC  946

seq1  GATTTTACCATAACTTGTTATGCAGAGAGCTAGAAAACAAAGAGACTGAG  998
      ||||||| ||| ||||| |||||| |||||||||||||||||||||||||
seq2  GATTTTA-CAT-ACTTG-TATGCA-AGAGCTAGAAAACAAAGAGACTGAG  992

seq1  AAGGGGCAACTGCCTGCCTGAA-CCACTGTTAACACTCAGAGATGTATTA  1047
      |  |||| |||| ||| ||||| |||||||  || |||| ||||||||| 
seq2  A--GGGC-ACTG-CTG-CTGAACCCACTGTACAC-CTCA-AGATGTATT-  1034

seq1  ATTATAATCTTTCCCATAGTAGAACAATTCTTCTAGAAATGAATGAAAAA  1097
      |||| ||||||  |||||||||||||  |||||| ||||||||||  |||
seq2  ATTA-AATCTT--CCATAGTAGAACA--TCTTCT-GAAATGAATG--AAA  1076

seq1  TTAATATAAA  1107
      ||||| ||||
seq2  TTAAT-TAAA  1085


seq1: chr15_22763556_22764053
seq2: B6Ng01-260L19.g_65_562 (reverse)

seq1  CAGCCACCCACCCCTACCCAACTAACACCCATCCCTGATTGATTTACCCA  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCCACCCCTACCCAACTAACACCCATCCCTGATTGATTTACCCA  50

seq1  CCACCACCACCAGCAACAGCAGCAGTAGCAGCAGCAGCAACAGCAGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACCAGCAACAGCAGCAGTAGCAGCAGCAGCAACAGCAGCATC  100

seq1  CCCCTTCCCTGGGAAATCAAGTCTCTACTGTATTAGACTCATCTTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCTGGGAAATCAAGTCTCTACTGTATTAGACTCATCTTCTCTC  150

seq1  ACTGAGGCCAAACAAAGCAGTCCTCTGCTAGATATATGGTGGGGGCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCCAAACAAAGCAGTCCTCTGCTAGATATATGGTGGGGGCAGGG  200

seq1  AGAGGCATGAAGTAGCCAATGTGTGCTCTGTGGTTGGATGCTCAGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATGAAGTAGCCAATGTGTGCTCTGTGGTTGGATGCTCAGTCTCT  250

seq1  GGGAACCAGGGTCCCTTGATACTGTGGTCTTCTTATAGGGTTGCCATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCAGGGTCCCTTGATACTGTGGTCTTCTTATAGGGTTGCCATCCC  300

seq1  CTTTAGCTCTTTCGATCCTCCTCCCAACTCTTACAGAGGGATCTAGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTCTTTCGATCCTCCTCCCAACTCTTACAGAGGGATCTAGAAGC  350

seq1  AGTATTTGTGTACTTTTTAAAAAACATTTCTCCTTTTATGTCTCCTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGTGTACTTTTTAAAAAACATTTCTCCTTTTATGTCTCCTTCCC  400

seq1  CTCTCAGTGAACAGTATATTATTATTATTTATATCCTTTCTATTTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTGAACAGTATATTATTATTATTTATATCCTTTCTATTTTTCTA  450

seq1  TTACCGTTATTTCTCCTTTTGATAACCTGTGTCTACCTATGAGAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGTTATTTCTCCTTTTGATAACCTGTGTCTACCTATGAGAATTC  498


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