BAC Information

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BAC

Clone NameB6Ng01-261E20
Chromosome15 (Build37)
Map Location 86,183,168 - 86,184,246
singlet/doubletsinglet
Overlap geneTbc1d22a
Upstream geneAtxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300
Downstream geneLOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261E20.bB6Ng01-261E20.g
ACCGA066006GA066007
length1,0661,179
definitionB6Ng01-261E20.b B6Ng01-261E20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgattttccctgggagccacttgcagaagccatgcaaagaag
gccacggcctgtgccatgccagctaagggagcgtcttagccctcagggca
gcaggaagccagctgggccacagtcgccctcatctttctgaataggtgtc
tcggctcatctactggacctgaaggtcaaataatgcttgagaaaatgtat
ggtttagaccccgaggcttaatctgagtggctcagccaagtgggatgtca
aggagacttgggtttgcattgcttttcatacccgaggctgacggagaaaa
attagcatcccctgtgtaagtgaagagcgggaagctcttctttactctca
acgcagatggcccttgacttattttgtttctcgtaaagacaaatgtgccc
actagagacttgtttgggcccaagcatcaatccatcacttcccgcctttg
ttaatgttttcatatttactccttcttcaggaacttcaggcctttccctg
ttagagaagggattgagctgtaatgtaaaagtttataaattatcactgtc
gcttctctgattatgagtgatgggacttgtgccatttaaatacaagatta
tctggcttctgtttgtaaataagatcgccgtacaacagaatcaatgctgg
cctttcatttttcacctgagctttgttgtcgggcaaagtggcttattgac
agggctgacaagcagaaggcaccacagtcccctggtgcctatgtttatag
cacgttcacagctcagtgggagctatctgtctttccctcacatggttagg
actgacctcacaggagcctcctgtgagcaggaaggagtagaagactctca
gttccaccgttcgggatttgggagcttggctggactcttgtggctcagca
atcccaagagcctggagacatcaggctcttccatgcaagagccagtttcg
ttttagttagcctgtgaggtataagcttgggttaaaatacagctcgaaag
gaccagcagcctattcccaaaggctgcatgcctgtctttacagtggtgct
gtttctagccactttc
gaattctcgactgagaaatatagaatggccaagaagcacctaaagaaatg
ttcaacatccttagtcatcagggaactacaaatcaaaacaaccctgagat
tccacctaacaccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaacatgaacactcctcctctgctggtg
ggattgcaagctggtacaaccactctggaaatcagtttgatggttcctca
gaaaattggacatagtactaccggaggacccagctataccactcctgggc
atatacccagaagaagctctgacatgtaataagaacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagagggatggataaaaaaattgtggtacatttacacaatg
gaatactactcagctattaaaaacaatgaattcatgaaattcctagacaa
atggatggaactagaaaatatcatcctgaatgaggtaacccaatcacaaa
agaatacatggtatatacccactgataaatgaatatcagtcctgaagctc
agaatacccaagatacaattcacagaccaaatgaagctcaagaagaaaga
agaccaaagtatggatactctggtccttcttagaaaagggaacaaaataa
ccatgggaggagatacagagacaaagtatggagctgagactgaaggaaag
atcacccagagaatgccccacctgaggatccatcccatatacagtcacca
aactcagacactatggaaaatgccaacaagagcttgctgacaggagcctg
atatagctgtctcctgagaggctctgacagtgtctgacaaatacataggt
ggatgctctcagacaaaccctggactggtcacaaggtcccagtggaggag
ctagcaaggacccaagagctgaagacttgcagcccataggagagcaacat
atgacaacgggtactccccagagctccaagggactaactacaacaagagt
acacatggagcgacccatgctgcaactgccatatgtagcaaaggaatgct
tgctgacatcattggaaggaagcttggacttgaagcttgatgcccagtta
aggggatgccaaggcacaggtaagtcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_86183168_86184246
seq2: B6Ng01-261E20.b_44_1109

seq1  GAATTCCATGATTTTCCCTGGGAGCCACTTGCAGAAGCCATGCAAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATTTTCCCTGGGAGCCACTTGCAGAAGCCATGCAAAGAAG  50

seq1  GCCACGGCCTGTGCCATGCCAGCTAAGGGAGCGTCTTAGCCCTCAGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGGCCTGTGCCATGCCAGCTAAGGGAGCGTCTTAGCCCTCAGGGCA  100

seq1  GCAGGAAGCCAGCTGGGCCACAGTCGCCCTCATCTTTCTGAATAGGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGCCAGCTGGGCCACAGTCGCCCTCATCTTTCTGAATAGGTGTC  150

seq1  TCGGCTCATCTACTGGACCTGAAGGTCAAATAATGCTTGAGAAAATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTCATCTACTGGACCTGAAGGTCAAATAATGCTTGAGAAAATGTAT  200

seq1  GGTTTAGACCCCGAGGCTTAATCTGAGTGGCTCAGCCAAGTGGGATGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGACCCCGAGGCTTAATCTGAGTGGCTCAGCCAAGTGGGATGTCA  250

seq1  AGGAGACTTGGGTTTGCATTGCTTTTCATACCCGAGGCTGACGGAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTTGGGTTTGCATTGCTTTTCATACCCGAGGCTGACGGAGAAAA  300

seq1  ATTAGCATCCCCTGTGTAAGTGAAGAGCGGGAAGCTCTTCTTTACTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATCCCCTGTGTAAGTGAAGAGCGGGAAGCTCTTCTTTACTCTCA  350

seq1  ACGCAGATGGCCCTTGACTTATTTTGTTTCTCGTAAAGACAAATGTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGATGGCCCTTGACTTATTTTGTTTCTCGTAAAGACAAATGTGCCC  400

seq1  ACTAGAGACTTGTTTGGGCCCAAGCATCAATCCATCACTTCCCGCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGACTTGTTTGGGCCCAAGCATCAATCCATCACTTCCCGCCTTTG  450

seq1  TTAATGTTTTCATATTTACTCCTTCTTCAGGAACTTCAGGCCTTTCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTTTCATATTTACTCCTTCTTCAGGAACTTCAGGCCTTTCCCTG  500

seq1  TTAGAGAAGGGATTGAGCTGTAATGTAAAAGTTTATAAATTATCACTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAGGGATTGAGCTGTAATGTAAAAGTTTATAAATTATCACTGTC  550

seq1  GCTTCTCTGATTATGAGTGATGGGACTTGTGCCATTTAAATACAAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTGATTATGAGTGATGGGACTTGTGCCATTTAAATACAAGATTA  600

seq1  TCTGGCTTCTGTTTGTAAATAAGATCGCCGTACAACAGAATCAATGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCTGTTTGTAAATAAGATCGCCGTACAACAGAATCAATGCTGG  650

seq1  CCTTTCATTTTTCACCTGAGCTTTGTTGTCGGGCAAAGTGGCTTATTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATTTTTCACCTGAGCTTTGTTGTCGGGCAAAGTGGCTTATTGAC  700

seq1  AGGGCTGACAAGCAGAAGGCACCACAGTCCCCTGGTGCCTATGTTTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGACAAGCAGAAGGCACCACAGTCCCCTGGTGCCTATGTTTATAG  750

seq1  CACGTTCACAGCTCAGTGGGAGCTATCTGTCTTTCCCTCACATGGTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCACAGCTCAGTGGGAGCTATCTGTCTTTCCCTCACATGGTTAGG  800

seq1  ACTGACCTCACAGGAGCCTCCTGTGAGCAGGAAGGAGTAGAAGACTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCACAGGAGCCTCCTGTGAGCAGGAAGGAGTAGAAGACTCTCA  850

seq1  GTTCCACCGTTCGGGATTTGGGAGCTTGGCTGGACTCTTGTGGCTCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTCCACCGTTCGGGATTTGGGAGCTTGGCTGGACTCTTGTGGCTCA-GC  899

seq1  AATCCCAAGAGCCTGGAGACATCAGGGCTCTTCCATGCAAGAGCCAGTTT  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATCCCAAGAGCCTGGAGACATCA-GGCTCTTCCATGCAAGAGCCAGTTT  948

seq1  CGTTTTAGGTTAGCCTGTGAGGTATAAGCTT-GGTTAAAATACAGCCTCG  999
      ||||||| ||||||||||||||||||||||| ||||||||||||| ||||
seq2  CGTTTTA-GTTAGCCTGTGAGGTATAAGCTTGGGTTAAAATACAG-CTCG  996

seq1  AAAGGACCAGCAGCCTATTCCCCAAGGGCCTGCATGGCCCTGTCCTTTAC  1049
      |||||||||||||||||||||| ||||  |||||||  ||||| ||||| 
seq2  AAAGGACCAGCAGCCTATTCCCAAAGG--CTGCATG--CCTGT-CTTTA-  1040

seq1  CAGTGGTGGCTTGTTTTCTAGCCCACTTTC  1079
      ||||||| |||   ||||||| ||||||||
seq2  CAGTGGT-GCT--GTTTCTAG-CCACTTTC  1066