BAC Information

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BAC

Clone NameB6Ng01-262O17
Chromosome15 (Build37)
Map Location 12,791,370 - 12,851,467
singlet/doubletdoublet
Overlap geneRnasen
Upstream geneNpr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik
Downstream geneCdh6, LOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262O17.bB6Ng01-262O17.g
ACCGA067214GA067215
length1,0631,149
definitionB6Ng01-262O17.b B6Ng01-262O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,850,398 - 12,851,467)(12,791,370 - 12,792,532)
sequence
gaattcaacttcagaataaatctatttggcaaaccacggacacagccagg
ctgacaacagaaacaaagctgcgaggttctggggctagcacggtggcagg
gcaggctgatggcttcaccgggttggcgctgagtgctgaggacccagcag
gaccaacagcatccttttacagtgcttcagaagggacccactcctaagaa
agccacacaccagccagcgacgacaatcaccggactgatggagatgcgag
cagacgcaggaacacacagctgcaaatcttagccaagctgtctagagaag
gtcacctaggaaaccctctcaagaacattctagtcaacttccatactgag
gtctacgaggcttctccagcactggagcccacattcctccaaacaccaag
ggatcagaattttgaactctggactagggatgcaagcttttcaaaaaggt
tcacgtggattctgatgaacacagaatttgacctaaagaagactggggta
gttaatgggaaaatggctggagagggctttctaggaaaactaaacattgt
ggcaaaaggagggactatgatacagcaaggtgaacacagtgggaactagg
aaaaaaaaaaaaaatcagagccaggtgagggagagctggtacaagcaagg
gcagcaggagacgggaggagttacatgtccctgcagagaataagaaaccc
cagacgctgatcctgtaactgctattttccacagaggcgttatctacagc
cgccatcagtattgggtaaggtttgcttgctcctcaataatggggaaagg
attctagaaagccatagaatgcctctagattttcttttaatacaagcctt
ctagatgcccttttccttactgtcttccaaaccctcccctttacaaaata
agtaatgtgtcctaaacagcctttcttgcctccactgaagttaattttaa
atcagaatcaagaagagaagcatagtcacgtctttgttaatcctgacaga
gactgtgaactctggtgccatgcaacggccagtacatattcaactcagac
ttctgctgtgaga
gaattcctgcatatgcaaatggtattaatttaagtcctattttgtgttct
tgttcacgtttagactgacaggccaacagtcatagaatatgatgaccacg
agtatatttttgaaggattttctatgtttgcacatgctcctctgaccaat
gtaagtattggctcttgtctccttcctcagacttcccccccagccccccc
ttgtctttttctttccacaaatcaaactaaatcccctttatgtgttcata
ccgtttattttgcgtctcccccatgtgaactgcagggtggctgcagctgt
gtctcaggcaggcctgtgagcctgctaatgagtcacaggtttgggctgca
ttaaacggtgtaagtaaacgtgttagagtaacatttagagagtgtgaaac
attgaaaagagggtaaactgtggggtgatgtgaagaactattttggggtt
cttgtccttcaaagttgaagtttgaagatgtctctgaacaaaggaaggag
aaacaggacctgttcaggacactgagcccagagtgacatcacagggtctc
tgctttaaactccagggctgtatctgtattcagagacttggtctgacaca
aggacttgtgatggttatctggtcactggggatggttttttgggcgtcag
tctaaatggatgctctggattgcatcagaatcctccctccccttttgaag
ttggcagccttgggaattgcagtgcccatctggtcttaggttgatcggtg
attgctgtagcagtttctggaggagcgtggcagttctttacctgggctga
gtgtcctgggaacctagtgagtgagtttcactgtgttgcttgcctgcagt
cagaaagtcaccatatagaactttttccactgaaggctgagtctcaatct
tgctccattttgcttctttctgtcattactttttactttattaagtagat
ggaattctaggtactgacactaaacttaaaacagtgctttctatttttct
tctatatatattcatctgcagatttttatttttattatttattatttttt
gaagattcactaagttagccagctgcctggatttgttggcgtgaactaag
atctttaacttgatctctcacctagtcctgattgagaatcagcatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12850398_12851467
seq2: B6Ng01-262O17.b_46_1108 (reverse)

seq1  TCTCACAGCCAGAGTCTGAGGTTTGGAATATGTACTGGCCGTTGCCATTG  50
      |||||||||   ||||||||   | ||||||||||||||||||| ||| |
seq2  TCTCACAGCAGAAGTCTGAG---TTGAATATGTACTGGCCGTTG-CATGG  46

seq1  CACCAGGGGTCAACAGTCCCTCTGTCAGG-TTTACAAAGCCGTGACTATG  99
      |||||| | || |||||  |||||||||| || |||||| ||||||||||
seq2  CACCAGAGTTC-ACAGT--CTCTGTCAGGATTAACAAAGACGTGACTATG  93

seq1  CTTCTCTTTCTTGTTTCTGATTTAAAATTAACCTTCAGTGAAGGCAAGAA  149
      |||||| |||||| ||||||||||||||||| |||||||| |||||||||
seq2  CTTCTC-TTCTTGATTCTGATTTAAAATTAA-CTTCAGTGGAGGCAAGAA  141

seq1  AGGCTGTTAGGGACACATTAC-TATTTGGTAAAGGGGAGGGTTTGGAAGA  198
      ||||||||  ||||||||||| ||||| ||||||||||||||||||||||
seq2  AGGCTGTTTAGGACACATTACTTATTTTGTAAAGGGGAGGGTTTGGAAGA  191

seq1  CAGTAAGGAAAAGGGCATCTAGAAGGCTTGTATTAAAAGAAAATCTAGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGGAAAAGGGCATCTAGAAGGCTTGTATTAAAAGAAAATCTAGAG  241

seq1  GCATTCTATGGCTTTCTAGAATCCTTTCCCCATTATTGAGGAGCAAGCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTATGGCTTTCTAGAATCCTTTCCCCATTATTGAGGAGCAAGCAA  291

seq1  ACCTTACCCAATACTGATGGCGGCTGTAGATAACGCCTCTGTGGAAAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACCCAATACTGATGGCGGCTGTAGATAACGCCTCTGTGGAAAATA  341

seq1  GCAGTTACAGGATCAGCGTCTGGGGTTTCTTATTCTCTGCAGGGACATGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTACAGGATCAGCGTCTGGGGTTTCTTATTCTCTGCAGGGACATGT  391

seq1  AACTCCTCCCGTCTCCTGCTGCCCTTGCTTGTACCAGCTCTCCCTCACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTCCCGTCTCCTGCTGCCCTTGCTTGTACCAGCTCTCCCTCACCT  441

seq1  GGCTCTGATTTTTTTTTTTTTTCCTAGTTCCCACTGTGTTCACCTTGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGATTTTTTTTTTTTTTCCTAGTTCCCACTGTGTTCACCTTGCTG  491

seq1  TATCATAGTCCCTCCTTTTGCCACAATGTTTAGTTTTCCTAGAAAGCCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGTCCCTCCTTTTGCCACAATGTTTAGTTTTCCTAGAAAGCCCT  541

seq1  CTCCAGCCATTTTCCCATTAACTACCCCAGTCTTCTTTAGGTCAAATTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCATTTTCCCATTAACTACCCCAGTCTTCTTTAGGTCAAATTCT  591

seq1  GTGTTCATCAGAATCCACGTGAACCTTTTTGAAAAGCTTGCATCCCTAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATCAGAATCCACGTGAACCTTTTTGAAAAGCTTGCATCCCTAGT  641

seq1  CCAGAGTTCAAAATTCTGATCCCTTGGTGTTTGGAGGAATGTGGGCTCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTCAAAATTCTGATCCCTTGGTGTTTGGAGGAATGTGGGCTCCA  691

seq1  GTGCTGGAGAAGCCTCGTAGACCTCAGTATGGAAGTTGACTAGAATGTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGAGAAGCCTCGTAGACCTCAGTATGGAAGTTGACTAGAATGTTC  741

seq1  TTGAGAGGGTTTCCTAGGTGACCTTCTCTAGACAGCTTGGCTAAGATTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGGTTTCCTAGGTGACCTTCTCTAGACAGCTTGGCTAAGATTTG  791

seq1  CAGCTGTGTGTTCCTGCGTCTGCTCGCATCTCCATCAGTCCGGTGATTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGTGTTCCTGCGTCTGCTCGCATCTCCATCAGTCCGGTGATTGT  841

seq1  CGTCGCTGGCTGGTGTGTGGCTTTCTTAGGAGTGGGTCCCTTCTGAAGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCGCTGGCTGGTGTGTGGCTTTCTTAGGAGTGGGTCCCTTCTGAAGCA  891

seq1  CTGTAAAAGGATGCTGTTGGTCCTGCTGGGTCCTCAGCACTCAGCGCCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAGGATGCTGTTGGTCCTGCTGGGTCCTCAGCACTCAGCGCCAA  941

seq1  CCCGGTGAAGCCATCAGCCTGCCCTGCCACCGTGCTAGCCCCAGAACCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTGAAGCCATCAGCCTGCCCTGCCACCGTGCTAGCCCCAGAACCTC  991

seq1  GCAGCTTTGTTTCTGTTGTCAGCCTGGCTGTGTCCGTGGTTTGCCAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTGTTTCTGTTGTCAGCCTGGCTGTGTCCGTGGTTTGCCAAATA  1041

seq1  GATTTATTCTGAAGTTGAATTC  1070
      ||||||||||||||||||||||
seq2  GATTTATTCTGAAGTTGAATTC  1063

seq1: chr15_12791370_12792532
seq2: B6Ng01-262O17.g_66_1214

seq1  GAATTCCTGCATATGCAAATGGTATTAATTTAAGTCCTATTTTGTGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATATGCAAATGGTATTAATTTAAGTCCTATTTTGTGTTCT  50

seq1  TGTTCACGTTTAGACTGACAGGCCAACAGTCATAGAATATGATGACCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACGTTTAGACTGACAGGCCAACAGTCATAGAATATGATGACCACG  100

seq1  AGTATATTTTTGAAGGATTTTCTATGTTTGCACATGCTCCTCTGACCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTTTGAAGGATTTTCTATGTTTGCACATGCTCCTCTGACCAAT  150

seq1  GTAAGTATTGGCTCTTGTCTCCTTCCTCAGACTTCCCCCCCAGCCCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATTGGCTCTTGTCTCCTTCCTCAGACTTCCCCCCCAGCCCCCCC  200

seq1  TTGTCTTTTTCTTTCCACAAATCAAACTAAATCCCCTTTATGTGTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTTTCTTTCCACAAATCAAACTAAATCCCCTTTATGTGTTCATA  250

seq1  CCGTTTATTTTGCGTCTCCCCCATGTGAACTGCAGGGTGGCTGCAGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTATTTTGCGTCTCCCCCATGTGAACTGCAGGGTGGCTGCAGCTGT  300

seq1  GTCTCAGGCAGGCCTGTGAGCCTGCTAATGAGTCACAGGTTTGGGCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGCAGGCCTGTGAGCCTGCTAATGAGTCACAGGTTTGGGCTGCA  350

seq1  TTAAACGGTGTAAGTAAACGTGTTAGAGTAACATTTAGAGAGTGTGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACGGTGTAAGTAAACGTGTTAGAGTAACATTTAGAGAGTGTGAAAC  400

seq1  ATTGAAAAGAGGGTAAACTGTGGGGTGATGTGAAGAACTATTTTGGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAGAGGGTAAACTGTGGGGTGATGTGAAGAACTATTTTGGGGTT  450

seq1  CTTGTCCTTCAAAGTTGAAGTTTGAAGATGTCTCTGAACAAAGGAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTTCAAAGTTGAAGTTTGAAGATGTCTCTGAACAAAGGAAGGAG  500

seq1  AAACAGGACCTGTTCAGGACACTGAGCCCAGAGTGACATCACAGGGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGACCTGTTCAGGACACTGAGCCCAGAGTGACATCACAGGGTCTC  550

seq1  TGCTTTAAACTCCAGGGCTGTATCTGTATTCAGAGACTTGGTCTGACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAACTCCAGGGCTGTATCTGTATTCAGAGACTTGGTCTGACACA  600

seq1  AGGACTTGTGATGGTTATCTGGTCACTGGGGATGGTTTTTTGGGCGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGTGATGGTTATCTGGTCACTGGGGATGGTTTTTTGGGCGTCAG  650

seq1  TCTAAATGGATGCTCTGGATTGCATCAGAATCCTCCCTCCCCTTTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGGATGCTCTGGATTGCATCAGAATCCTCCCTCCCCTTTTGAAG  700

seq1  TTGGCAGCCTTGGGAATTGCAGTGCCCATCTGGTCTTAGGTTGATCGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCCTTGGGAATTGCAGTGCCCATCTGGTCTTAGGTTGATCGGTG  750

seq1  ATTGCTGTAGCAGTTTCTGGAGGAGCGTGGCAGTTCTTTACCTGGGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTAGCAGTTTCTGGAGGAGCGTGGCAGTTCTTTACCTGGGCTGA  800

seq1  GTGTCCTGGGAACCTAGTGAGTGAGTTTCACTGTGTTGCTTGCCTGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGGGAACCTAGTGAGTGAGTTTCACTGTGTTGCTTGCCTGCAGT  850

seq1  CAGAAAGTCACCATATAGAAC-TTTTCCACTGAAGGCTGAGTCTCAAATC  899
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  CAGAAAGTCACCATATAGAACTTTTTCCACTGAAGGCTGAGTCTC-AATC  899

seq1  TTGCTCCATTTTGCTTCTTTCTGTCATTACTTTTTACTTTATTAAGTAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCATTTTGCTTCTTTCTGTCATTACTTTTTACTTTATTAAGTAGA  949

seq1  TGGAATTCTAGGTACTGACACT-AACTTAAAACAGTGCTTTCTTATTTTT  998
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TGGAATTCTAGGTACTGACACTAAACTTAAAACAGTGCTTTC-TATTTTT  998

seq1  CTTCTATATTATA-TCATCCTGCAGATTTTTATTTTTATTTATTTATTTA  1047
      |||||||| |||| |||| ||||||||||||||||||| ||||||| |||
seq2  CTTCTATA-TATATTCAT-CTGCAGATTTTTATTTTTA-TTATTTA-TTA  1044

seq1  TTTTTTGAGGTCTCACTAAG-TAGCCCAAGCTGGCCTGGAATTTGTT-GC  1095
      |||||||| |  |||||||| |||||  |||| |||||| ||||||| ||
seq2  TTTTTTGAAGATTCACTAAGTTAGCC--AGCT-GCCTGG-ATTTGTTGGC  1090

seq1  GTGACCTAGGGTCTTTAAACTTGGATCTTCTCACCTTAGTCTCTTGATTG  1145
      |||| ||| | ||||| ||||| |||| ||||||| |||  || ||||| 
seq2  GTGAACTAAGATCTTT-AACTT-GATC-TCTCACC-TAG--TCCTGATT-  1133

seq1  GAGAATCCAGGCATGTGT  1163
      |||||||   ||||||||
seq2  GAGAATC--AGCATGTGT  1149