BAC Information

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BAC

Clone NameB6Ng01-263G03
Chromosome15 (Build37)
Map Location 50,788,073 - 50,871,875
singlet/doubletdoublet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263G03.bB6Ng01-263G03.g
ACCGA067566GA067567
length1,1541,170
definitionB6Ng01-263G03.b B6Ng01-263G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,788,073 - 50,789,225)(50,870,704 - 50,871,875)
sequence
gaattcagtaagttaaaacatgcaggtctttggaagtcaccagtgaacca
gacaagcattcaacttactgtcaaccttattacttcccattgtaagaaaa
tggtagggacagctgtgtagcccaggctaacctagaatttccaattctcc
tcccccagcgtgccattttcggtactcctctgcagttccttcctcactcc
actatttcccaaggacagttcctgtttcgggaattttttttaatatataa
aaaaaaaatctaagttgttttaattgttgttttgttgttattttttgttt
cttttggttttgtatgttattttagctgagtccaattgtggcgagtgtta
aatgtggtcaagtgagatcatgttcttatcaaagctttaggatctgagaa
aaatgaagcccaagtcacaatacaacactgagtaactggattgtaaaaat
tattttgtcttatttttcatcaaccaaaaatgatgatatggtattgagta
cccaaatgcttgtgagtttttatgaaaatgaaatgtatcaattcatgaat
ggcagttgttattaaccattatcaataacatcattggtttttttatctta
cataagaagtgttaagtgacttgaagcagctcacctacaggatcatcttt
atgaagacagaaaggtgatgtgggctcaggtcttttttctgtaaaagaag
catgaagatagtgcacccattaacatttctgttcaatgtctttcctgggt
ttgagagaaacaacactgtttagtatgttttactttcaatttgcataaag
ctatttagccaaaatgaaaagaacacgaactctacaacttaaattatgta
tgttcttcttggtgcttttagagcaatcttttccctagtattacattctc
cgacatcatacctggagctactcggaagcatagaaacttctagaaaatac
ttaatcatttgccttgtcttgcctgcctattctctttaaaagtgatccct
tctactaacaaatgtacagggttttgtcttccattttttcaccagaatat
gcacttcatttatttgaacaattaaacctggagtcagtattggatgttag
attttgaaataagtgaataattctgtggtaaccaattattggtgaaattc
atga

gaattcagtacaggtgcttccaatgcccataggtctcttctctgtgtgat
tgcataagattgtataagtgtataagatgttctatcattcataacgacaa
taaataaatatgttaaattaattggaaataaagaaaatgggtacattgaa
aagggaacacttttagaaaatgttgcttttattcttatttttgcctgtcc
cttcaatactcaagtggaattatttgtagacactgtgatactcaataact
aataagataaaagaaacagcacccatgctgtttctcagaggatcatacca
aagcacagaaacacttgttaaatcatggacttcagaagaattaaagattt
atatttcatctttaagaatggatgaaagttataatgtagagccagtcaat
gtatattattttcttttctgtatgggtttatgtcacagctcatcccataa
gtactttaaatggcttttagtgttttataaacagaacaaaagttgtgtcc
atcaatgggattcatgtgaattttaattatgcatgttttagtatatttga
tgtgtaattgtgataagctatcaatgatgaaacagtagtgaactgtgcca
atcactcatattgcccatttgcaatgctgacttatttatttctatggata
taatatacaaaggaagatggtttttatatttctgttcttggtgactttca
aaaaactaagtccaataaaatatagaatatacatttaaaatcaccttcag
aaaaacaaaaatcaaataaacagtgagtgagttataaattagtaccaaga
acttcagtgagatgaaatagtattatgatctaaaaataccatggaaaagg
ttttaaactattttagaaagtaaaatatataatctcaattatttttcttc
agtcttctgttcactacatcctgattgtgatgtgacataacgcatttccc
tccattatttatactgtgtagactatcaggatatttagattttctcacta
ctatggacttattttttatgggagcacactgagctgatactttgttatac
aattcgactagtcaggaggcatcactacctgatttgtttagcacaaaaca
ccaaggacctgtgaatacaaacttgaaagggtactagccattgaagaagt
tattgtgttgccttcagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50788073_50789225
seq2: B6Ng01-263G03.b_43_1196

seq1  GAATTCAGTAAGTTAAAACATGCAGGTCTTTGGAAGTCACCAGTGAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGTTAAAACATGCAGGTCTTTGGAAGTCACCAGTGAACCA  50

seq1  GACAAGCATTCAACTTACTGTCAACCTTATTACTTCCCATTGTAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCATTCAACTTACTGTCAACCTTATTACTTCCCATTGTAAGAAAA  100

seq1  TGGTAGGGACAGCTGTGTAGCCCAGGCTAACCTAGAATTTCCAATTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGACAGCTGTGTAGCCCAGGCTAACCTAGAATTTCCAATTCTCC  150

seq1  TCCCCCAGCGTGCCATTTTCGGTACTCCTCTGCAGTTCCTTCCTCACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGCGTGCCATTTTCGGTACTCCTCTGCAGTTCCTTCCTCACTCC  200

seq1  ACTATTTCCCAAGGACAGTTCCTGTTTCGGGAATTTTTTTTAATATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCCCAAGGACAGTTCCTGTTTCGGGAATTTTTTTTAATATATAA  250

seq1  AAAAAAAATCTAAGTTGTTTTAATTGTTGTTTTGTTGTTATTTTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCTAAGTTGTTTTAATTGTTGTTTTGTTGTTATTTTTTGTTT  300

seq1  CTTTTGGTTTTGTATGTTATTTTAGCTGAGTCCAATTGTGGCGAGTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTTTTGTATGTTATTTTAGCTGAGTCCAATTGTGGCGAGTGTTA  350

seq1  AATGTGGTCAAGTGAGATCATGTTCTTATCAAAGCTTTAGGATCTGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTCAAGTGAGATCATGTTCTTATCAAAGCTTTAGGATCTGAGAA  400

seq1  AAATGAAGCCCAAGTCACAATACAACACTGAGTAACTGGATTGTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGCCCAAGTCACAATACAACACTGAGTAACTGGATTGTAAAAAT  450

seq1  TATTTTGTCTTATTTTTCATCAACCAAAAATGATGATATGGTATTGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTCTTATTTTTCATCAACCAAAAATGATGATATGGTATTGAGTA  500

seq1  CCCAAATGCTTGTGAGTTTTTATGAAAATGAAATGTATCAATTCATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATGCTTGTGAGTTTTTATGAAAATGAAATGTATCAATTCATGAAT  550

seq1  GGCAGTTGTTATTAACCATTATCAATAACATCATTGGTTTTTTTATCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTGTTATTAACCATTATCAATAACATCATTGGTTTTTTTATCTTA  600

seq1  CATAAGAAGTGTTAAGTGACTTGAAGCAGCTCACCTACAGGATCATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAAGTGTTAAGTGACTTGAAGCAGCTCACCTACAGGATCATCTTT  650

seq1  ATGAAGACAGAAAGGTGATGTGGGCTCAGGTCTTTTTTCTGTAAAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACAGAAAGGTGATGTGGGCTCAGGTCTTTTTTCTGTAAAAGAAG  700

seq1  CATGAAGATAGTGCACCCATTAACATTTCTGTTCAATGTCTTTCCTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATAGTGCACCCATTAACATTTCTGTTCAATGTCTTTCCTGGGT  750

seq1  TTGAGAGAAACAACACTGTTTAGTATGTTTTACTTTCAATTTGCATAAGG  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGAGAGAAACAACACTGTTTAGTATGTTTTACTTTCAATTTGCATAAAG  800

seq1  CTATTTAGCCAAAATGAAAAGAACACGAACTCTACAACTTAAATTATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGCCAAAATGAAAAGAACACGAACTCTACAACTTAAATTATGTA  850

seq1  TGTTCTTCTTGGTGCTTTTAGAGCAATCTTTTCCCTAGTATTACATTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCTTGGTGCTTTTAGAGCAATCTTTTCCCTAGTATTACATTCTC  900

seq1  CGACATCATACCTGGAGCTACTCGGAAGCATAGAAACTTCTAGAAAATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATCATACCTGGAGCTACTCGGAAGCATAGAAACTTCTAGAAAATAC  950

seq1  TTAATCATTTGCCTTGTTCTTGCCTGCCTATTCTCTTTAAAAGTGATCCC  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAATCATTTGCCTTG-TCTTGCCTGCCTATTCTCTTTAAAAGTGATCCC  999

seq1  TTCTACTAACAAAATGTACAGGGTTTTGTCTTCCATTTTTCCACCAG-AT  1049
      |||||||||| ||||||||||||||||||||||||||||| |||||| ||
seq2  TTCTACTAAC-AAATGTACAGGGTTTTGTCTTCCATTTTTTCACCAGAAT  1048

seq1  ATGCCACTTCATTTATTTG-ACAATT-AACCTGAAGTCAAGTATTTGGAT  1097
      ||| ||||||||||||||| |||||| |||||| |||| |||| ||||||
seq2  ATG-CACTTCATTTATTTGAACAATTAAACCTGGAGTC-AGTA-TTGGAT  1095

seq1  G-TAGATTTTGAAATTAGTGAATAATTCTGTG--TAGCAATTATTGGTGA  1144
      | ||||||||||||| ||||||||||||||||   | |||||||||||||
seq2  GTTAGATTTTGAAATAAGTGAATAATTCTGTGGTAACCAATTATTGGTGA  1145

seq1  AATCCATGA  1153
      ||| |||||
seq2  AATTCATGA  1154


seq1: chr15_50870704_50871875
seq2: B6Ng01-263G03.g_67_1236 (reverse)

seq1  CCCCTG-AGGCAACACTACTTCTT-TTCATATGGCTAGTAACCCTTCAAG  48
      |||||| ||||||||| |   ||| |||| |||||||||| || ||||||
seq2  CCCCTGAAGGCAACACAATAACTTCTTCA-ATGGCTAGTACCCTTTCAAG  49

seq1  -TTGTATTCACAGGGTCCTGGTG-TTTGTGCTTAAACAAATCAGTTAAGT  96
       |||||||||||||  | ||||| ||||||| |||||||||||| | |||
seq2  TTTGTATTCACAGGTCCTTGGTGTTTTGTGC-TAAACAAATCAGGT-AGT  97

seq1  GGATTGCTCTGGAACTAGTCGAATTGTAT-ACAAAGTTATCAGCTCAGTG  145
       |||  |||  | |||||||||||||||| |||||| |||||||||||||
seq2  -GATGCCTCCTG-ACTAGTCGAATTGTATAACAAAG-TATCAGCTCAGTG  144

seq1  TGCTCCCAT-AAAAATAAGTCCATAGTAGTGAGAAAAATCTTAAATATCC  194
      ||||||||| ||||||||||||||||||||||| |||||| ||||||| |
seq2  TGCTCCCATAAAAAATAAGTCCATAGTAGTGAG-AAAATC-TAAATAT-C  191

seq1  CTGATAGTCTACACAGTATAAATAATGGAGGGAAATGCGTTATGTCACAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTCTACACAGTATAAATAATGGAGGGAAATGCGTTATGTCACAT  241

seq1  CACAATCAGGATGTAGTGAACAGAAGACTGAAGAAAAATAATTGAGATTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCAGGATGTAGTGAACAGAAGACTGAAGAAAAATAATTGAGATTA  291

seq1  TATATTTTACTTTCTAAAATAGTTTAAAACC-TTTCCATGGTATTTTTAG  343
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATATTTTACTTTCTAAAATAGTTTAAAACCTTTTCCATGGTATTTTTAG  341

seq1  ATCATAATACTATTTCATCTCACTGAAGTTCTTGGTACTAATTTATAACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATACTATTTCATCTCACTGAAGTTCTTGGTACTAATTTATAACT  391

seq1  CACTCACTGTTTATTTGATTTTTGTTTTTCTGAAGGTGATTTTAAATGTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTGTTTATTTGATTTTTGTTTTTCTGAAGGTGATTTTAAATGTA  441

seq1  TATTCTATATTTTATTGGACTTAGTTTTTTGAAAGTCACCAAGAACAGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATATTTTATTGGACTTAGTTTTTTGAAAGTCACCAAGAACAGAA  491

seq1  ATATAAAAACCATCTTCCTTTGTATATTATATCCATAGAAATAAATAAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAACCATCTTCCTTTGTATATTATATCCATAGAAATAAATAAGT  541

seq1  CAGCATTGCAAATGGGCAATATGAGTGATTGGCACAGTTCACTACTGTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTGCAAATGGGCAATATGAGTGATTGGCACAGTTCACTACTGTTT  591

seq1  CATCATTGATAGCTTATCACAATTACACATCAAATATACTAAAACATGCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGATAGCTTATCACAATTACACATCAAATATACTAAAACATGCA  641

seq1  TAATTAAAATTCACATGAATCCCATTGATGGACACAACTTTTGTTCTGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAATTCACATGAATCCCATTGATGGACACAACTTTTGTTCTGTT  691

seq1  TATAAAACACTAAAAGCCATTTAAAGTACTTATGGGATGAGCTGTGACAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACACTAAAAGCCATTTAAAGTACTTATGGGATGAGCTGTGACAT  741

seq1  AAACCCATACAGAAAAGAAAATAATATACATTGACTGGCTCTACATTATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATACAGAAAAGAAAATAATATACATTGACTGGCTCTACATTATA  791

seq1  ACTTTCATCCATTCTTAAAGATGAAATATAAATCTTTAATTCTTCTGAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATCCATTCTTAAAGATGAAATATAAATCTTTAATTCTTCTGAAG  841

seq1  TCCATGATTTAACAAGTGTTTCTGTGCTTTGGTATGATCCTCTGAGAAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGATTTAACAAGTGTTTCTGTGCTTTGGTATGATCCTCTGAGAAAC  891

seq1  AGCATGGGTGCTGTTTCTTTTATCTTATTAGTTATTGAGTATCACAGTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGTGCTGTTTCTTTTATCTTATTAGTTATTGAGTATCACAGTGT  941

seq1  CTACAAATAATTCCACTTGAGTATTGAAGGGACAGGCAAAAATAAGAATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATAATTCCACTTGAGTATTGAAGGGACAGGCAAAAATAAGAATA  991

seq1  AAAGCAACATTTTCTAAAAGTGTTCCCTTTTCAATGTACCCATTTTCTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACATTTTCTAAAAGTGTTCCCTTTTCAATGTACCCATTTTCTTT  1041

seq1  ATTTCCAATTAATTTAACATATTTATTTATTGTCGTTATGAATGATAGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAATTAATTTAACATATTTATTTATTGTCGTTATGAATGATAGAA  1091

seq1  CATCTTATACACTTATACAATCTTATGCAATCACACAGAGAAGAGACCTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATACACTTATACAATCTTATGCAATCACACAGAGAAGAGACCTA  1141

seq1  TGGGCATTGGAAGCACCTGTACTGAATTC  1172
      |||||||||||||||||||||||||||||
seq2  TGGGCATTGGAAGCACCTGTACTGAATTC  1170


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