BAC Information

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BAC

Clone NameB6Ng01-263H09
Chromosome15 (Build37)
Map Location 47,827,194 - 47,980,895
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263H09.bB6Ng01-263H09.g
ACCGA067622GA067623
length1,0281,150
definitionB6Ng01-263H09.b B6Ng01-263H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,980,371 - 47,980,895)(47,827,194 - 47,828,355)
sequence
gaattctgaatattatttaaactgagttcaaactgaaagcatgattcatt
ctacataattccaaattttgttgtgtagtagcaacctctcctacaaaaat
atgtttataattaccatagtctctgtggagtagtatgttggttctaaagg
aacatctgctaaagtcctttcagattccatctaaatatatcctctttgta
tgtgatagcattagacaaacagatcaacttatacacagcctttattaaga
agagtataacatttgtattttaaaaggttaattctttgagaatttcatgg
attgtttttattatagttaccaccttgtcaacttatttgattaataccct
ctcattccacatacacaaaatctttgtacccttagattttttttgattgt
tttatatctgtgcattctagttagtactgttatacattgtggtatgagcc
tatctattggagtgcagtctatctgccaggaggtatacattcccctgctc
cttttaaagaaaatagattacttttcatacactatatctggatttcagtt
tcctttagtgaattcctctgaattactctgtaactcccctccctgtggat
ccactccttttctgtttctcagaagaaaagaatagccttcaaagagataa
caacaaaacataacataaaatatcataagataaaattaaaaatatcatat
tgaatttggaaaaggcaaatgaactgaaggaaaagagcccgagagaaagc
agtaaaatcagagaccttgtctttcatatactcaggataaaattactaag
ctgaaagctgtaatatttagacagaggaactggtgcaaaaataaaaattg
tcagccctatgcttgctatatcagcctctgtgagttcatatgagctttgc
tcagctaatttagagggccttgttttcctctgtttcttctgcctcatcta
tcaagaggttcctatacttcaagggaagggatttgataaagaccttccca
ttcagattcatgtgtttcaaaatcttcc

gaattcctgatgctagaagatcaaatttcaatgttgtcgtctaacttgtc
aaaaacgaggattattagaaacatttaaaaaatgtcatctggaaaatggg
ccttaggtaaatgcaaaggaaagacagtttcttgagatactaggataatt
actggaggaaaaagaaggtagtcatgatgcctatttcatcagaacttcct
tgtttcccagtacattcctcccgggattggatgctactgatgcatttcca
attgcagtatttgaggaatccctagttcatgtcatttgttgtcttagagt
gagtgctttcttctagccttcaataatagtcctttcagttatcataatta
tcacccctactaatcttattatttttgttaaacaatatttgtatccatat
caaagtctcagtctgtgtgcagaatccatttctaatatgtttgtaatcta
gtagatatctgaacttatttttctatacccacagggtatattaattttgt
ttgtgacaaacatattttaaagttgtcatttagtggtagttggctccact
atacttgtgcgtagaattctgtgagaccttgaaaataagtactcaaaaac
aagtaaaattatggaaagtgttagatgctcaaaattagttaggatgatgt
gcaaagaggtttcaggatcaagcgaaatggtggtaaatatatggcagcgt
gtactagggtcagtttactaaaagtcacggaatcaattcctaagtcaaaa
cagtctcacaaattttgtaaactaaacagaaagtgaagcaaaatgagata
cagaacactgtatgagaacaaaggttgagtgatggtgataagatcatgtg
aggtatagacaataaacagaagtgccttcctagaaaatgaggcaggtatg
atcttatccatcaaaatgactgagaaaaaggagtttcccacattccagga
taagaaaaatctcctagatcatttttaaatatatccttctatttagtatt
actgctcacaaaaaataaaaataaaatgatagataatatataatcccagt
ggcttcatcattggtgttctgtagatgctaagggatcagatttgtagctc
aagatagctctaggtacatagctggccatgttgaaggaagtccaggtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47980371_47980895
seq2: B6Ng01-263H09.b_43_567 (reverse)

seq1  AAAAGTAATCTATTTTCTTTAAAAGGAGCAGGGGAATGTATACCTCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATCTATTTTCTTTAAAAGGAGCAGGGGAATGTATACCTCCTGG  50

seq1  CAGATAGACTGCACTCCAATAGATAGGCTCATACCACAATGTATAACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGACTGCACTCCAATAGATAGGCTCATACCACAATGTATAACAGT  100

seq1  ACTAACTAGAATGCACAGATATAAAACAATCAAAAAAAATCTAAGGGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTAGAATGCACAGATATAAAACAATCAAAAAAAATCTAAGGGTAC  150

seq1  AAAGATTTTGTGTATGTGGAATGAGAGGGTATTAATCAAATAAGTTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTGTGTATGTGGAATGAGAGGGTATTAATCAAATAAGTTGACA  200

seq1  AGGTGGTAACTATAATAAAAACAATCCATGAAATTCTCAAAGAATTAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTAACTATAATAAAAACAATCCATGAAATTCTCAAAGAATTAACC  250

seq1  TTTTAAAATACAAATGTTATACTCTTCTTAATAAAGGCTGTGTATAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATACAAATGTTATACTCTTCTTAATAAAGGCTGTGTATAAGTT  300

seq1  GATCTGTTTGTCTAATGCTATCACATACAAAGAGGATATATTTAGATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTTGTCTAATGCTATCACATACAAAGAGGATATATTTAGATGGA  350

seq1  ATCTGAAAGGACTTTAGCAGATGTTCCTTTAGAACCAACATACTACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAGGACTTTAGCAGATGTTCCTTTAGAACCAACATACTACTCCA  400

seq1  CAGAGACTATGGTAATTATAAACATATTTTTGTAGGAGAGGTTGCTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTATGGTAATTATAAACATATTTTTGTAGGAGAGGTTGCTACTA  450

seq1  CACAACAAAATTTGGAATTATGTAGAATGAATCATGCTTTCAGTTTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAAATTTGGAATTATGTAGAATGAATCATGCTTTCAGTTTGAAC  500

seq1  TCAGTTTAAATAATATTCAGAATTC  525
      |||||||||||||||||||||||||
seq2  TCAGTTTAAATAATATTCAGAATTC  525


seq1: chr15_47827194_47828355
seq2: B6Ng01-263H09.g_65_1214

seq1  GAATTCCTGATGCTAGAAGATCAAATTTCAATGTTGTCGTCTAACTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATGCTAGAAGATCAAATTTCAATGTTGTCGTCTAACTTGTC  50

seq1  AAAAACGAGGATTATTAGAAACATTTAAAAAATGTCATCTGGAAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACGAGGATTATTAGAAACATTTAAAAAATGTCATCTGGAAAATGGG  100

seq1  CCTTAGGTAAATGCAAAGGAAAGACAGTTTCTTGAGATACTAGGATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGTAAATGCAAAGGAAAGACAGTTTCTTGAGATACTAGGATAATT  150

seq1  ACTGGAGGAAAAAGAAGGTAGTCATGATGCCTATTTCATCAGAACTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGAAAAAGAAGGTAGTCATGATGCCTATTTCATCAGAACTTCCT  200

seq1  TGTTTCCCAGTACATTCCTCCCGGGATTGGATGCTACTGATGCATTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCAGTACATTCCTCCCGGGATTGGATGCTACTGATGCATTTCCA  250

seq1  ATTGCAGTATTTGAGGAATCCCTAGTTCATGTCATTTGTTGTCTTAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTATTTGAGGAATCCCTAGTTCATGTCATTTGTTGTCTTAGAGT  300

seq1  GAGTGCTTTCTTCTAGCCTTCAATAATAGTCCTTTCAGTTATCATAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTTCTTCTAGCCTTCAATAATAGTCCTTTCAGTTATCATAATTA  350

seq1  TCACCCCTACTAATCTTATTATTTTTGTTAAACAATATTTGTATCCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCTACTAATCTTATTATTTTTGTTAAACAATATTTGTATCCATAT  400

seq1  CAAAGTCTCAGTCTGTGTGCAGAATCCATTTCTAATATGTTTGTAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTCAGTCTGTGTGCAGAATCCATTTCTAATATGTTTGTAATCTA  450

seq1  GTAGATATCTGAACTTATTTTTCTATACCCACAGGGTATATTAATTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATATCTGAACTTATTTTTCTATACCCACAGGGTATATTAATTTTGT  500

seq1  TTGTGACAAACATATTTTAAAGTTGTCATTTAGTGGTAGTTGGCTCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACAAACATATTTTAAAGTTGTCATTTAGTGGTAGTTGGCTCCACT  550

seq1  ATACTTGTGCGTAGAATTCTGTGAGACCTTGAAAATAAGTACTCAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTGCGTAGAATTCTGTGAGACCTTGAAAATAAGTACTCAAAAAC  600

seq1  AAGTAAAATTATGGAAAGTGTTAGATGCTCAAAATTAGTTAGGATGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAATTATGGAAAGTGTTAGATGCTCAAAATTAGTTAGGATGATGT  650

seq1  GCAAAGAGGTTTCAGGATCAAGCGAAATGGTGGTAAATATATGGCAGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGTTTCAGGATCAAGCGAAATGGTGGTAAATATATGGCAGCGT  700

seq1  GTACTAGGGTCAGTTTACTAAAAGTCACGGAATCAATTCCTAAGTCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGGGTCAGTTTACTAAAAGTCACGGAATCAATTCCTAAGTCAAAA  750

seq1  CAGTCTCACAAATTTTGTAAACTAAACAGAAGGTGAAGCAAAATGAGATA  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGTCTCACAAATTTTGTAAACTAAACAGAAAGTGAAGCAAAATGAGATA  800

seq1  CAGAACACTGTATGAGAACAAAGGTTGAGTGATGGTGATAAGATCATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACTGTATGAGAACAAAGGTTGAGTGATGGTGATAAGATCATGTG  850

seq1  AGGTATAGACAATAAACAGAAGTGCCTTCCTAGAAAATGAGGCAGGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATAGACAATAAACAGAAGTGCCTTCCTAGAAAATGAGGCAGGTATG  900

seq1  ATCTTATCCATCAAAATGACTGAGAAAAAGGAGTTTCCCACATTCCAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCCATCAAAATGACTGAGAAAAAGGAGTTTCCCACATTCCAGGA  950

seq1  TAGAAAAAATCTCCTAGATCATTTTTAAATATATTCCTTCTATTTAGTAT  1000
      ||  ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAGAAAAATCTCCTAGATCATTTTTAAATATA-TCCTTCTATTTAGTAT  999

seq1  TACTGCTCACAAAAATAAAATAAAATGAAATAAAATAAAATATAATA---  1047
      ||||||||||||    |||||||    ||||||||| | | ||||||   
seq2  TACTGCTCACAA----AAAATAA----AAATAAAATGATAGATAATATAT  1041

seq1  AATCCCAGTGGCTTCATCATTTGGTGTTCTGTAGAGTGCTTAAGGGATTC  1097
      ||||||||||||||||||| ||||||||||||||| ||| ||||||||  
seq2  AATCCCAGTGGCTTCATCA-TTGGTGTTCTGTAGA-TGC-TAAGGGAT--  1086

seq1  CAGAATTTGTAGCTCAAGGATAGCTCTAAGTACATAGCTTGCCATGGTGG  1147
      ||| ||||||||||||| |||||||||| |||||||||| |||||| || 
seq2  CAG-ATTTGTAGCTCAA-GATAGCTCTAGGTACATAGCTGGCCATGTTGA  1134

seq1  AGGAAGTCCA-GTATT  1162
      |||||||||| |||||
seq2  AGGAAGTCCAGGTATT  1150


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