BAC Information

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BAC

Clone NameB6Ng01-268J08
Chromosome16 (Build37)15 (Build37)
Map Location 17,982,294 - 17,983,33383,441,011 - 83,441,218
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2
Downstream geneDgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268J08.bB6Ng01-268J08.g
ACCGA071403GA071404
length1,046475
definitionB6Ng01-268J08.b B6Ng01-268J08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,982,294 - 17,983,333)(83,441,011 - 83,441,218)
sequence
gaattcagagagagggcaagagaggaaggcaagagtaagagagtaagggg
gcaagcatcccctttaatagtgggccaggcctacctggctgttgccaggt
aactgtgggggtggagaataccagggacttggggtattgccctacatgac
tgatggccacagaatggagctcaggccttgtgtcaggagcctggtgtctg
ggggcatggcaaatgaccttctgtcccttgcaggaacctgctgggtctct
ggggtttaaacctagattgaccagaaagcaggctgcctttcacagtccca
cagggaggagtgcacagctcctgcctgggttccagagacgcttgggggtc
tcatcaagggcctttacagcttttctttctttctttctttctttcttcct
tccttccttccttccttccttacttccttccttccttcctttctctcttt
ctctttctttctttctttctttctttctttctttctttctttctttcttt
cttaaagattttatttatttattttatatatatgatgagtacactgtagc
tgtcttcagacacacaccagaagagggcatcagatcccattacagatggc
tgtgagccatcatatggttgctgggaattgagctcaggacctctggaaga
tcagtcaatgctcttaaccactgagccatctctctagcccccacacagct
tttcttgactgatggctttgggttctgagtcttgaaatatgagacatgtg
gtccactgaggtcacactatgcttgttggctgcagaggacagggatgaaa
agaaattacagagtcctggccttggacctccagggatgcagtccagaatg
caccccgaaagaaccttgtatgtgaggcatctgtactacatagatgtgct
ttacctaaagggaaatgccaggcaaaaattggtgtcctttgtggcttcaa
acctgattgagaacattctatctaccactgcttaatggatccctgcttcc
tctgacccatgactcttacctattaaaacagtggttccagtgccac
ttggtccacagtggaactgtttggaaaggattaggtggtgtggctttgtt
ggaataagtgtggccttgttggaggatgtatatagatatatgcttattct
ctctgttcctgtagagaacctgactaatacaggagtggtacccccagggt
gagacccaattcaggtaagctgccaacctgtgaaaaatgaattaaaggaa
aaaacatcaacaatggaaggcttaagtgaatgtaattcaagaagaggcca
ggttgccgggcagtggtggagcatgcctttaatcacagcacttgggaggc
agaggcaggtagatctctgagtttgaggccagcctggtctacagagtaag
ttccagaacacccagggcttcacagagaaaccctgtcttgaaaaaaaaaa
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_17982294_17983333
seq2: B6Ng01-268J08.b_43_1088

seq1  GAATTCAGAGAGAGGGCAAGAGAGGAAGGCAAGAGTAAGAGAGTAAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGAGGGCAAGAGAGGAAGGCAAGAGTAAGAGAGTAAGGGG  50

seq1  GCAAGCATCCCCTTTAATAGTGGGCCAGGCCTACCTGGCTGTTGCCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATCCCCTTTAATAGTGGGCCAGGCCTACCTGGCTGTTGCCAGGT  100

seq1  AACTGTGGGGGTGGAGAATACCAGGGACTTGGGGTATTGCCCTACATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGGGGTGGAGAATACCAGGGACTTGGGGTATTGCCCTACATGAC  150

seq1  TGATGGCCACAGAATGGAGCTCAGGCCTTGTGTCAGGAGCCTGGTGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCCACAGAATGGAGCTCAGGCCTTGTGTCAGGAGCCTGGTGTCTG  200

seq1  GGGGCATGGCAAATGACCTTCTGTCCCTTGCAGGAACCTGCTGGGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGGCAAATGACCTTCTGTCCCTTGCAGGAACCTGCTGGGTCTCT  250

seq1  GGGGTTTAAACCTAGATTGACCAGAAAGCAGGCTGCCTTTCACAGTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTAAACCTAGATTGACCAGAAAGCAGGCTGCCTTTCACAGTCCCA  300

seq1  CAGGGAGGAGTGCACAGCTCCTGCCTGGGTTCCAGAGACGCTTGGGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGAGTGCACAGCTCCTGCCTGGGTTCCAGAGACGCTTGGGGGTC  350

seq1  TCATCAAGGGCCTTTACAGCTTTTCTTTCTTTCTTTCTTTCTTTCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGGGCCTTTACAGCTTTTCTTTCTTTCTTTCTTTCTTTCTTCCT  400

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTCTCTTT  450
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTACTTCCTTCCTTCCTTCCTTTCTCTCTTT  450

seq1  CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  500

seq1  CTTAAAGATTTTATTTATTTATTTTATATATATGATGAGTACACTGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGATTTTATTTATTTATTTTATATATATGATGAGTACACTGTAGC  550

seq1  TGTCTTCAGACACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGACACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGC  600

seq1  TGTGAGCCATCATATGGTTGCTGGGAATTGAGCTCAGGACCTCTGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCATCATATGGTTGCTGGGAATTGAGCTCAGGACCTCTGGAAGA  650

seq1  TCAGTCAATGCTCTTAACCACTGAGCCATCTCTCTAGCCCCCACACAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAATGCTCTTAACCACTGAGCCATCTCTCTAGCCCCCACACAGCT  700

seq1  TTTCTTGACTGATGGCTTTGGGTTCTGAGTCTTGAAATATGAGACATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGACTGATGGCTTTGGGTTCTGAGTCTTGAAATATGAGACATGTG  750

seq1  GTCCACTGAGGTCACACTATGCTTGTTGGCTGCAGAGGACAGGGATG-AA  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCCACTGAGGTCACACTATGCTTGTTGGCTGCAGAGGACAGGGATGAAA  800

seq1  AGAAATTACAGAGTCCTGGCC-TGGACCTCCAGGGATGCAGTCCAGAATG  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAATTACAGAGTCCTGGCCTTGGACCTCCAGGGATGCAGTCCAGAATG  850

seq1  CACCCCGAAAGAACC-TGTATGTGAGGCATCTGTACTACATAGATGTGCT  897
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACCCCGAAAGAACCTTGTATGTGAGGCATCTGTACTACATAGATGTGCT  900

seq1  TTACCT-AAGGGAAATGCCAGGCAAAAA-TGGTGTCCTTTGTGGCTTCAA  945
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  TTACCTAAAGGGAAATGCCAGGCAAAAATTGGTGTCCTTTGTGGCTTCAA  950

seq1  ACCTGATTGAGAACA-TCTATCTACCACTGCTAAAT-GATCCCCTTGCTT  993
      ||||||||||||||| |||||||||||||||| ||| ||||||  |||||
seq2  ACCTGATTGAGAACATTCTATCTACCACTGCTTAATGGATCCC--TGCTT  998

seq1  CCTCTGACCCAGGACTCTTACTTA-TAAAACAGTGGTCCCAGTGCCAC  1040
      ||||||||||| ||||||||| || |||||||||||| ||||||||||
seq2  CCTCTGACCCATGACTCTTACCTATTAAAACAGTGGTTCCAGTGCCAC  1046

seq1: chr15_83441011_83441218
seq2: B6Ng01-268J08.g_324_545 (reverse)

seq1  CCTCCTCCTCCTCCTCTTCTTCTTCTTC----------TCT--CTCTCTT  38
      ||||||||||||||||||||||||||||          |||   |||  |
seq2  CCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  50

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCT  88
      | || || || || || || || |||||  |||||| |||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTCAAGACAGGGTTTCT  100

seq1  CTGTGTAGCCCTGGCTG-TCTGGAACTCACTCTGTAGACCAGGCTGGCCT  137
      ||||| |||||||| || ||||||||| ||||||||||||||||||||||
seq2  CTGTGAAGCCCTGGGTGTTCTGGAACTTACTCTGTAGACCAGGCTGGCCT  150

seq1  C-GACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  186
      |  ||||||| |||| |||||||||||||||||||||||| |||||||||
seq2  CAAACTCAGAGATCTACCTGCCTCTGCCTCCCAAGTGCTGTGATTAAAGG  200

seq1  CATGTGCCACCACTGCCTGGCA  208
      ||||  ||||||||||| ||||
seq2  CATGCTCCACCACTGCCCGGCA  222