BAC Information

Click to search

BAC

Clone NameB6Ng01-272A10
Chromosome15 (Build37)
Map Location 55,247,519 - 55,404,483
singlet/doubletdoublet
Overlap geneCol14a1, Mrpl13, Mtbp
Upstream geneColec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6
Downstream geneSntb1, LOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272A10.bB6Ng01-272A10.g
ACCGA073953GA073954
length1,1851,123
definitionB6Ng01-272A10.b B6Ng01-272A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,403,299 - 55,404,483)(55,247,519 - 55,248,655)
sequence
gaattctgcctcgtgcagtgcccagtcacctctctgtactaaggagttaa
agaatggggggagggtatagggaactttcgggatagcatttgaaatgtaa
ataaagaaaatatctaataaaaaaaaaaaagaacaagagactaacgggga
aatagctcagcttgggaaaaacagcttgattattacactctcccacaatt
tactgaaaaatcattcattaagcttaagtataagaattaccaattattct
ttctgttacacactatttccttaattattagttctaagtatctactataa
agcataaaaataagagtgagtaaaaaaataatctgtcttaaaaatattca
agggtgctatgttagtggtctgtttcaaagcagcaattatgtaatataaa
atgtctgttctggaccagtgaagcggctcacgaggtgcaggcacctgccc
ttttgccaaccctcagggtggaaggagataagtgactcctgctagctgtc
ccctgacctacacacaagtgacccacccccccaagaagactctgaatatt
tcaaacatatatggtggcatttataattacttaaaagtacagaaagatgt
atcatccaactaacgttcataaatctatcatactgatggcaagaggaata
tctgagcaggtcagaattgtgcataaattcctctgctttccccacatatt
cctaacattctcctctgatgctcacaagcacaaaagggccaaactggagg
aagcctttgcctattctagaaacatgagttagtgcaggaagcatggcgta
ggagttggggataaactttgaaacttttcttaagaccatgactagggaaa
aatatactgaattatcttagggtatgatccaacatgtaaatgtaaagggg
aaatcacagaaaacagcttcacgtgtgcttttttctgccctttcttggta
caagtgggcttttgcaagtgagaccgtttagaaagccaacttgggaattg
ggagtcacacccacatactcacaatccttctttaccagaacagtgtcaag
aaaagaaacagaggtcatggagagcatcttggattcagaaaaagggaaag
tgattctaatgccattgggacctaaataaagcagtattaaacacaaacca
cggttgggtggatcagaccgtgcctggccaggaca
gaattctcctccatcaccatatgaaaaccatgttctaaaaatggaatttt
gcacgatgggacacagcaaagtgtatgaactctatagtttcttctgcaaa
tcacagctggctatatgtggtccagacagccctcatagagcaagacagga
aagttacatatctgaaaaaattaaaaccacaaagctccctagtggaattt
gcattgcatttaatcactaacatctttcacagagttgtcttaaaaatgaa
aggcaccatctgctatgactgcagcagctgtattttaagtaggagcttct
attgatatatatatatatataatttgactttcttttacttaaacaagcaa
agactgaacaggatgacatttgcataccccagagggaatttccatttttc
ttttttcttttaattttatttttatgcatgtgtgttcacacacttgtgtg
aaggtggcatagaggccagaagtcgtcatcatttgcagctggagttacat
gctggtaactgaaatcaggtcctctcagagagtagtgtcttagggtttct
attgctgtgaagagacaccatgaccatggcaactctctctctttttttaa
atatttatttatttatttatttatttatttatttatttatttatttattt
aatgtttgtgagcacactgtaactgtacagatggttgtgagccctcgtgt
ggttgttgggaattgaatttttaggacttctgcttgctctggtcaaccat
gctcactccggttaactctgcttgctcagtccctgcttgctctggcccaa
agatgtatttattattatacataagtacactgtagctgacttcagacaca
tccgaagagggcatcagatctcattacaggtggttgtgaaccaccatgtg
gttgctgggaattgaactcaggaccttcagaagtgcagtcagtgctctta
cctgctgaaccatctctcagctctcatttttctctgatgatgatatgaga
tggaaaaaaggtttgctctgcaatactgtatgcataaaccccaaagtagc
agcctagaatcagaatctctagggtttcatatgttccgtactgaccagtt
ggatctgtttcaatgtctataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_55403299_55404483
seq2: B6Ng01-272A10.b_47_1231 (reverse)

seq1  TGTCCTGCCCA-GCACTGTCTGGATCCACCCA--CGTTGGTTTTGTGTTT  47
      ||||||| ||| |||| |||| ||||||||||  |||  | |||||| ||
seq2  TGTCCTGGCCAGGCACGGTCT-GATCCACCCAACCGT--GGTTTGTG-TT  46

seq1  TATTACTGCTTTATTTAGTTCCAAATGGCATTTAAGAATCACTTTCCCTT  97
      || ||||||||||||||| ||| |||||||||  ||||||||||||||||
seq2  TAATACTGCTTTATTTAGGTCCCAATGGCATT--AGAATCACTTTCCCTT  94

seq1  TTCTGGAATCCAAGATGCCTCTCCATGACTTCTGTT--CTTTCTTGACAC  145
      ||   |||||||||||| ||||||||||| ||||||   |||||||||||
seq2  TTTCTGAATCCAAGATG-CTCTCCATGACCTCTGTTTCTTTTCTTGACAC  143

seq1  TGTTCTGGTAAAGAAGGATTGTGGAGTATGTGGGTGTGACTCCCAATTCC  195
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTCTGGTAAAGAAGGATTGT-GAGTATGTGGGTGTGACTCCCAATTCC  192

seq1  AAAGTTGGCTTTCTAAACGGTCTCACTTGCAAAAGCCCACTTGTACCAAG  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGCTTTCTAAACGGTCTCACTTGCAAAAGCCCACTTGTACCAAG  242

seq1  AAAGGGCAG-AAAAAGCACACGTGAAGCTG-TTTCTGTGATTT-CCCTTT  292
      ||||||||| |||||||||||||||||||| |||||||||||| ||||||
seq2  AAAGGGCAGAAAAAAGCACACGTGAAGCTGTTTTCTGTGATTTCCCCTTT  292

seq1  ACATTTACATGTTGGATCATACCCTAAGATAATTCAGTATATTTTTCCCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACATGTTGGATCATACCCTAAGATAATTCAGTATATTTTTCCCT  342

seq1  AGTCATGGTCTTAAGAAAAGTTTCAAAGTTTATCCCCAACTCCTACGCCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGTCTTAAGAAAAGTTTCAAAGTTTATCCCCAACTCCTACGCCA  392

seq1  TGCTTCCTGCACTAACTCATGTTTCTAGAATAGGCAAAGGCTTCCTCCAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGCACTAACTCATGTTTCTAGAATAGGCAAAGGCTTCCTCCAG  442

seq1  TTTGGCCCTTTTGTGCTTGTGAGCATCAGAGGAGAATGTTAGGAATATGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCTTTTGTGCTTGTGAGCATCAGAGGAGAATGTTAGGAATATGT  492

seq1  GGGGAAAGCAGAGGAATTTATGCACAATTCTGACCTGCTCAGATATTCCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGCAGAGGAATTTATGCACAATTCTGACCTGCTCAGATATTCCT  542

seq1  CTTGCCATCAGTATGATAGATTTATGAACGTTAGTTGGATGATACATCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATCAGTATGATAGATTTATGAACGTTAGTTGGATGATACATCTT  592

seq1  TCTGTACTTTTAAGTAATTATAAATGCCACCATATATGTTTGAAATATTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTTTTAAGTAATTATAAATGCCACCATATATGTTTGAAATATTC  642

seq1  AGAGTCTTCTTGGGGGGGTGGGTCACTTGTGTGTAGGTCAGGGGACAGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTCTTGGGGGGGTGGGTCACTTGTGTGTAGGTCAGGGGACAGCT  692

seq1  AGCAGGAGTCACTTATCTCCTTCCACCCTGAGGGTTGGCAAAAGGGCAGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGTCACTTATCTCCTTCCACCCTGAGGGTTGGCAAAAGGGCAGG  742

seq1  TGCCTGCACCTCGTGAGCCGCTTCACTGGTCCAGAACAGACATTTTATAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCACCTCGTGAGCCGCTTCACTGGTCCAGAACAGACATTTTATAT  792

seq1  TACATAATTGCTGCTTTGAAACAGACCACTAACATAGCACCCTTGAATAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATTGCTGCTTTGAAACAGACCACTAACATAGCACCCTTGAATAT  842

seq1  TTTTAAGACAGATTATTTTTTTACTCACTCTTATTTTTATGCTTTATAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGACAGATTATTTTTTTACTCACTCTTATTTTTATGCTTTATAGT  892

seq1  AGATACTTAGAACTAATAATTAAGGAAATAGTGTGTAACAGAAAGAATAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTAGAACTAATAATTAAGGAAATAGTGTGTAACAGAAAGAATAA  942

seq1  TTGGTAATTCTTATACTTAAGCTTAATGAATGATTTTTCAGTAAATTGTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTCTTATACTTAAGCTTAATGAATGATTTTTCAGTAAATTGTG  992

seq1  GGAGAGTGTAATAATCAAGCTGTTTTTCCCAAGCTGAGCTATTTCCCCGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGTAATAATCAAGCTGTTTTTCCCAAGCTGAGCTATTTCCCCGT  1042

seq1  TAGTCTCTTGTTCTTTTTTTTTTTTATTAGATATTTTCTTTATTTACATT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTTGTTCTTTTTTTTTTTTATTAGATATTTTCTTTATTTACATT  1092

seq1  TCAAATGCTATCCCGAAAGTTCCCTATACCCTCCCCCCATTCTTTAACTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTATCCCGAAAGTTCCCTATACCCTCCCCCCATTCTTTAACTC  1142

seq1  CTTAGTACAGAGAGGTGACTGGGCACTGCACGAGGCAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTACAGAGAGGTGACTGGGCACTGCACGAGGCAGAATTC  1185

seq1: chr15_55247519_55248655
seq2: B6Ng01-272A10.g_65_1187

seq1  GAATTCTCCTCCATCACCATATGAAAACCATGTTCTAAAAATGGAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCATCACCATATGAAAACCATGTTCTAAAAATGGAATTTT  50

seq1  GCACGATGGGACACAGCAAAGTGTATGAACTCTATAGTTTCTTCTGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGATGGGACACAGCAAAGTGTATGAACTCTATAGTTTCTTCTGCAAA  100

seq1  TCACAGCTGGCTATATGTGGTCCAGACAGCCCTCATAGAGCAAGACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTGGCTATATGTGGTCCAGACAGCCCTCATAGAGCAAGACAGGA  150

seq1  AAGTTACATATCTGAAAAAATTAAAACCACAAAGCTCCCTAGTGGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACATATCTGAAAAAATTAAAACCACAAAGCTCCCTAGTGGAATTT  200

seq1  GCATTGCATTTAATCACTAACATCTTTCACAGAGTTGTCTTAAAAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCATTTAATCACTAACATCTTTCACAGAGTTGTCTTAAAAATGAA  250

seq1  AGGCACCATCTGCTATGACTGCAGCAGCTGTATTTTAAGTAGGAGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCATCTGCTATGACTGCAGCAGCTGTATTTTAAGTAGGAGCTTCT  300

seq1  ATTGATATATATATATATATAATTTGACTTTCTTTTACTTAAACAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATATATATATATATAATTTGACTTTCTTTTACTTAAACAAGCAA  350

seq1  AGACTGAACAGGATGACATTTGCATACCCCAGAGGGAATTTCCATTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAACAGGATGACATTTGCATACCCCAGAGGGAATTTCCATTTTTC  400

seq1  TTTTTTCTTTTAATTTTATTTTTATGCATGTGTGTTCACACACTTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTAATTTTATTTTTATGCATGTGTGTTCACACACTTGTGTG  450

seq1  AAGGTGGCATAGAGGCCAGAAGTCGTCATCATTTGCAGCTGGAGTTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCATAGAGGCCAGAAGTCGTCATCATTTGCAGCTGGAGTTACAT  500

seq1  GCTGGTAACTGAAATCAGGTCCTCTCAGAGAGTAGTGTCTTAGGGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAACTGAAATCAGGTCCTCTCAGAGAGTAGTGTCTTAGGGTTTCT  550

seq1  ATTGCTGTGAAGAGACACCATGACCATGGCAACTCTCTCTCTTTTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTGAAGAGACACCATGACCATGGCAACTCTCTCTCTTTTTTTAA  600

seq1  ATATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT  650

seq1  AATGTTTGTGAGCACACTGTAACTGTACAGATGGTTGTGAGCCCTCGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGTGAGCACACTGTAACTGTACAGATGGTTGTGAGCCCTCGTGT  700

seq1  GGTTGTTGGGAATTGAATTTTTAGGACTTCTGCTTGCTCTGGTCAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTGGGAATTGAATTTTTAGGACTTCTGCTTGCTCTGGTCAACCAT  750

seq1  GCTCACTCCGGTTAACTCTGCTTGCTCAGTCCCTGCTTGCTCTGGCCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCCGGTTAACTCTGCTTGCTCAGTCCCTGCTTGCTCTGGCCCAA  800

seq1  AGATGTATTTATTATTATACATAAGTACACTGTAGCTGACTTCAGACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATTTATTATTATACATAAGTACACTGTAGCTGACTTCAGACACA  850

seq1  TCCGAAGAGGGCATCAGATCTCATTACAGGTGGTTGTGAACCACCATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAGAGGGCATCAGATCTCATTACAGGTGGTTGTGAACCACCATGTG  900

seq1  GTTGCTGGGAATTGAACTCAGGACCTTCAGAAGTGCAGTCAGTGCTCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGAATTGAACTCAGGACCTTCAGAAGTGCAGTCAGTGCTCTTA  950

seq1  CCTGCTGAACCATCTCTCCAGCTCTCCATTTTTCTCTTGATGATGAATAT  1000
      ||||||||||||||||| ||||||| |||||||||| |||||||| ||||
seq2  CCTGCTGAACCATCTCT-CAGCTCT-CATTTTTCTC-TGATGATG-ATAT  996

seq1  GAGGATGGAAAAAAGGGTTTGCTCTGC-ATACTTGTATGCATAAACCCCC  1049
      || ||||||||||| |||||||||||| |||| |||||||||||| ||||
seq2  GA-GATGGAAAAAA-GGTTTGCTCTGCAATAC-TGTATGCATAAA-CCCC  1042

seq1  AAAGGTTAAGCAGGCCCTAG-ATCAG-ATCTCTAGGGTTTCAATATGGTC  1097
      ||||    |||||  ||||| ||||| |||||||||||||| ||||| | 
seq2  AAAG---TAGCAG--CCTAGAATCAGAATCTCTAGGGTTTC-ATATGTT-  1085

seq1  CCCGTACTGGACCATGTGGGTCTGTTTCCATGTCTATAAC  1137
       ||||||| |||||  ||| |||||||| |||||||||||
seq2  -CCGTACT-GACCAGTTGGATCTGTTTCAATGTCTATAAC  1123