BAC Information

Click to search

BAC

Clone NameB6Ng01-272C24
Chromosome15 (Build37)
Map Location 98,524,209 - 98,687,800
singlet/doubletdoublet
Overlap geneCcdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2
Upstream geneD15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1
Downstream geneRhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272C24.bB6Ng01-272C24.g
ACCGA074077GA074078
length1,1301,100
definitionB6Ng01-272C24.b B6Ng01-272C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,524,209 - 98,525,354)(98,686,689 - 98,687,800)
sequence
gaattcaggtgtctctatcaataaaacagtgtcaaagccaggtctggctg
ggcatgacagcactcgtctattatcccagcacttaggaggcagagcaggc
agatctgagttcaaggccagcctggtctacagagtgagttccaggacagc
caggggtacacagagaaaccctgtctcagaaaccaaaacaaaacaaaaaa
aggggtctcagtgaagtcattccaggagaaggtctagcccaggcttgcag
aggcaaagaacttgaaaatgaaatgttatcttagggtccccaggacttct
gtattagtcagggttctctagagtcacagaacttatggatagtctctaga
tagtaaaggaatttattgatgacttacagtcggcagcccaattcccaatg
gttcagtcgcaatggtttctcaactttgttgctcagttcagggtcatgaa
gctgagcccagcaaagtggtgtcggaaaggggcaggcaggtgggctgagt
tccttgtgaaagcacaaaaggagatttttgttgttcaacatagaggaagc
tgattggaggaaagaacactctcgaggatggaagaggacatagctcagag
tgcgagcctgctatgcgctaggctcctaacggatttctgcacagaagagg
acatagctcagagcgtgagcctgctatgcgctaggctcctaacggatttc
tgcactctgtaactgggatggaagaggaagggtcagaagcttgaagtcac
cttgggctacttagtgcatttgtggccagcctgggctacgtgaaatgaaa
aggaaaagaaagcaaacaaaatctcctaagactaatagagctgttaggct
ggagagatggctcaatagtttagaaagaaatggagtccaattcccagaac
ccacgtggtagctggtaaccacccataactctacttccagggaatccaat
gcctcttctgttgtccatgggttccagcatgcacaagttcgtagacattc
acataagcaaatactcgtgcatataaataaataaataaattaaaataaat
aaatgacagcactggagaaagggctcagtgataaaggcaccaccccagga
gatgagttgattacagaaacgaccgacgtg
gaattcccaaaccagctaagaccggagaccatctcctctgctccaacctc
tataaactttaaagactcaggcctagtcagtggcaaagttatgattagaa
ccaagattttcctattcccagacatggttcattgcatcaggcaaatcagc
tttttaatacaagaacctcattcaagagagcacggctttcttctcacaga
agggacaaggccatcttttctgccacggtgtgggcaccactctttgcaag
aatgctggccttcagcaagtagagttcttcctgtctcttggcagctagag
agtccgttaggtgaacctgtggttaacaggttctggacatagcaggcttc
tgcaacagcactcatcttagaatccctcagtcactggtagagcttcattg
gcctgctgtctcagctcttaggaactgacaggacttgtctgtcactgctt
gtgtctcagttgggtacatgggttgacatgtggagttttggtttccatgg
ggcctctgtccaggggtcatatgttcttccctgttgtccagagccccagt
tctttcgcttcgagggtgtgtggctgacagaaactggcatggcggtgctg
cgtaacctgaccatgtcaccactgcacaagcggcgccagcggcgaggacg
gctaggcctcccaggcgaggcagggctggagggttctgagccctcagatg
cccttggccctgatgacaagaaggatggggacctggacactgacgatctg
ctcaagggtgaaggttgggctggggaatctcagagaaaggcagatagcgg
gagaaacagcccataagagttgggatgttgggtaggggctacagagccac
tactggtctccactagcacttcgtcttactcaagtggcactgtggcaggt
tactgggttcccttcttgcaatgtgacaaggataaagggcccatttctct
gatctgcctgtcttcttctgttacatgcagcgtgttgagcaaatggatgt
gaaataaagctagcgccccgcagccctgatgtagaactgccaagaagaga
cgagtaagcaaaaagcgcaagcgcaaccctatcggcaggtgaagcctggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98524209_98525354
seq2: B6Ng01-272C24.b_29_1158

seq1  GAATTCAGGTGTCTCTATCAATAAAACAGTGTCAAAGCCAGGTCTGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTCTCTATCAATAAAACAGTGTCAAAGCCAGGTCTGGCTG  50

seq1  GGCATGACAGCACTCGTCTATTATCCCAGCACTTAGGAGGCAGAGCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGACAGCACTCGTCTATTATCCCAGCACTTAGGAGGCAGAGCAGGC  100

seq1  AGATCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  150

seq1  CAGGGGTACACAGAGAAACCCTGTCTCAGAAACCAAAACAAAACAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTACACAGAGAAACCCTGTCTCAGAAACCAAAACAAAACAAAAAA  200

seq1  AGGGGTCTCAGTGAAGTCATTCCAGGAGAAGGTCTAGCCCAGGCTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCTCAGTGAAGTCATTCCAGGAGAAGGTCTAGCCCAGGCTTGCAG  250

seq1  AGGCAAAGAACTTGAAAATGAAATGTTATCTTAGGGTCCCCAGGACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGAACTTGAAAATGAAATGTTATCTTAGGGTCCCCAGGACTTCT  300

seq1  GTATTAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGATAGTCTCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGTCAGGGTTCTCTAGAGTCACAGAACTTATGGATAGTCTCTAGA  350

seq1  TAGTAAAGGAATTTATTGATGACTTACAGTCGGCAGCCCAATTCCCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGGAATTTATTGATGACTTACAGTCGGCAGCCCAATTCCCAATG  400

seq1  GTTCAGTCGCAATGGTTTCTCAACTTTGTTGCTCAGTTCAGGGTCATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTCGCAATGGTTTCTCAACTTTGTTGCTCAGTTCAGGGTCATGAA  450

seq1  GCTGAGCCCAGCAAAGTGGTGTCGGAAAGGGGCAGGCAGGTGGGCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCCAGCAAAGTGGTGTCGGAAAGGGGCAGGCAGGTGGGCTGAGT  500

seq1  TCCTTGTGAAAGCACAAAAGGAGATTTTTGTTGTTCAACATAGAGGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGAAAGCACAAAAGGAGATTTTTGTTGTTCAACATAGAGGAAGC  550

seq1  TGATTGGAGGAAAGAACACTCTCGAGGATGGAAGAGGACATAGCTCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGAGGAAAGAACACTCTCGAGGATGGAAGAGGACATAGCTCAGAG  600

seq1  TGCGAGCCTGCTATGCGCTAGGCTCCTAACGGATTTCTGCACAGAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGCCTGCTATGCGCTAGGCTCCTAACGGATTTCTGCACAGAAGAGG  650

seq1  ACATAGCTCAGAGCGTGAGCCTGCTATGCGCTAGGCTCCTAACGGATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTCAGAGCGTGAGCCTGCTATGCGCTAGGCTCCTAACGGATTTC  700

seq1  TGCACTCTGTAACTGGGATGGAAGAGGAAGGGTCAGAAGCTTGAAGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCTGTAACTGGGATGGAAGAGGAAGGGTCAGAAGCTTGAAGTCAC  750

seq1  CTTGGGCTACTTAGTGCATTTGTGGCCAGCCTGGGCTACGTGAAATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTACTTAGTGCATTTGTGGCCAGCCTGGGCTACGTGAAATGAAA  800

seq1  AGGAAAAGAAAGCAAACAAAATCTCCTAAGACTAATAGAGCTGTTAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAAAGCAAACAAAATCTCCTAAGACTAATAGAGCTGTTAGGCT  850

seq1  GGAGAGATGGCTCAATAGTTTAGAAAGAAATGGAGTCCAATTCCCAGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGCTCAATAGTTTAGAAAGAAATGGAGTCCAATTCCCAGAAC  900

seq1  CCACGTGGTAGCTGGTAACCACCCATAACTCTACTTCCAGGGAATCCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGTAGCTGGTAACCACCCATAACTCTACTTCCAGGGAATCCAAT  950

seq1  GCCCTCTTCTGTTGTCCATGGGTTCCAGCATGCACAAGGTTCGTAGACAT  1000
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  G-CCTCTTCTGTTGTCCATGGGTTCCAGCATGCACAA-GTTCGTAGACAT  998

seq1  TCACATAAGCAAAATACTCGTGCATATAAAATAAAATAAAATAAAATAAA  1050
      |||||||||| |||||||||||||||| |||||||   ||||||| ||||
seq2  TCACATAAGC-AAATACTCGTGCATAT-AAATAAA--TAAATAAATTAAA  1044

seq1  ATAAAATAAAATGACAGCACTGGGAAGGAAAGGGCTCAGTGGATAAAGGG  1100
      |||||   |||||||||||||||    ||||||||||||| |||||||| 
seq2  ATAAA--TAAATGACAGCACTGG---AGAAAGGGCTCAGT-GATAAAGG-  1087

seq1  CCACCACCCCAGGAGATGAGTTTGATTACCAGAAACGACGGACGTG  1146
       ||||||||||||||||||| ||||||| |||||||||| ||||||
seq2  -CACCACCCCAGGAGATGAG-TTGATTA-CAGAAACGACCGACGTG  1130

seq1: chr15_98686689_98687800
seq2: B6Ng01-272C24.g_62_1161 (reverse)

seq1  CCCAGGCCTCACCTGGCCGATAGGGTTTGCGCTTGCGCTTTTTGCTTTCC  50
      ||||||| |||||| |||||||||| ||||||||||||||||||| || |
seq2  CCCAGGCTTCACCT-GCCGATAGGG-TTGCGCTTGCGCTTTTTGC-TTAC  47

seq1  TCTGTCTCTTCTTTGCCAAGTTCTACATCAGGGCTGGCGGGGCCTTCTAG  100
      || |||||||||| ||  ||||||||||||||||| |||||||   ||||
seq2  TC-GTCTCTTCTTGGC--AGTTCTACATCAGGGCT-GCGGGGC--GCTAG  91

seq1  CTTAATTTCACATTCCATTTGCTCAACACCGCCTGCATGTAACAGAAGAA  150
      ||| |||||||| ||||||||||||||||   ||||||||||||||||||
seq2  CTTTATTTCACA-TCCATTTGCTCAACAC--GCTGCATGTAACAGAAGAA  138

seq1  GACAGGCAGATCAGAGAAATGGGCCCTTTTATCCTTGTCACATTGCAAG-  199
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  GACAGGCAGATCAGAGAAATGGGCCC-TTTATCCTTGTCACATTGCAAGA  187

seq1  AGGGAACCCAGTAACCTGCCACAGTGCCACTTGAGTAAGACGAAGTGCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCCAGTAACCTGCCACAGTGCCACTTGAGTAAGACGAAGTGCTA  237

seq1  GTGGAGACCAGTAGTGGCTCTGTAGCCCCTACCCAACATCCCAACTCTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACCAGTAGTGGCTCTGTAGCCCCTACCCAACATCCCAACTCTTA  287

seq1  TGGGCTGTTTCTCCCGCTATCTGCCTTTCTCTGAGATTCCCCAGCCCAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTTTCTCCCGCTATCTGCCTTTCTCTGAGATTCCCCAGCCCAAC  337

seq1  CTTCACCCTTGAGCAGATCGTCAGTGTCCAGGTCCCCATCCTTCTTGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCTTGAGCAGATCGTCAGTGTCCAGGTCCCCATCCTTCTTGTCA  387

seq1  TCAGGGCCAAGGGCATCTGAGGGCTCAGAACCCTCCAGCCCTGCCTCGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCAAGGGCATCTGAGGGCTCAGAACCCTCCAGCCCTGCCTCGCC  437

seq1  TGGGAGGCCTAGCCGTCCTCGCCGCTGGCGCCGCTTGTGCAGTGGTGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCCTAGCCGTCCTCGCCGCTGGCGCCGCTTGTGCAGTGGTGACA  487

seq1  TGGTCAGGTTACGCAGCACCGCCATGCCAGTTTCTGTCAGCCACACACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGTTACGCAGCACCGCCATGCCAGTTTCTGTCAGCCACACACCC  537

seq1  TCGAAGCGAAAGAACTGGGGCTCTGGACAACAGGGAAGAACATATGACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGCGAAAGAACTGGGGCTCTGGACAACAGGGAAGAACATATGACCC  587

seq1  CTGGACAGAGGCCCCATGGAAACCAAAACTCCACATGTCAACCCATGTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGAGGCCCCATGGAAACCAAAACTCCACATGTCAACCCATGTAC  637

seq1  CCAACTGAGACACAAGCAGTGACAGACAAGTCCTGTCAGTTCCTAAGAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGAGACACAAGCAGTGACAGACAAGTCCTGTCAGTTCCTAAGAGC  687

seq1  TGAGACAGCAGGCCAATGAAGCTCTACCAGTGACTGAGGGATTCTAAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGCAGGCCAATGAAGCTCTACCAGTGACTGAGGGATTCTAAGAT  737

seq1  GAGTGCTGTTGCAGAAGCCTGCTATGTCCAGAACCTGTTAACCACAGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGTTGCAGAAGCCTGCTATGTCCAGAACCTGTTAACCACAGGTT  787

seq1  CACCTAACGGACTCTCTAGCTGCCAAGAGACAGGAAGAACTCTACTTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAACGGACTCTCTAGCTGCCAAGAGACAGGAAGAACTCTACTTGCT  837

seq1  GAAGGCCAGCATTCTTGCAAAGAGTGGTGCCCACACCGTGGCAGAAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCAGCATTCTTGCAAAGAGTGGTGCCCACACCGTGGCAGAAAAGA  887

seq1  TGGCCTTGTCCCTTCTGTGAGAAGAAAGCCGTGCTCTCTTGAATGAGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTCCCTTCTGTGAGAAGAAAGCCGTGCTCTCTTGAATGAGGTT  937

seq1  CTTGTATTAAAAAGCTGATTTGCCTGATGCAATGAACCATGTCTGGGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTAAAAAGCTGATTTGCCTGATGCAATGAACCATGTCTGGGAAT  987

seq1  AGGAAAATCTTGGTTCTAATCATAACTTTGCCACTGACTAGGCCTGAGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATCTTGGTTCTAATCATAACTTTGCCACTGACTAGGCCTGAGTC  1037

seq1  TTTAAAGTTTATAGAGGTTGGAGCAGAGGAGATGGTCTCCGGTCTTAGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTTATAGAGGTTGGAGCAGAGGAGATGGTCTCCGGTCTTAGCT  1087

seq1  GGTTTGGGAATTC  1112
      |||||||||||||
seq2  GGTTTGGGAATTC  1100