BAC Information

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BAC

Clone NameB6Ng01-273O04
Chromosome3 (Build37)15 (Build37)
Map Location 64,441,776 - 64,442,18141,889,405 - 41,890,310
singlet/doubletsingletsinglet
Overlap gene4930518C23Rik
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
Downstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273O04.bB6Ng01-273O04.g
ACCGA075338GA075339
length9891,130
definitionB6Ng01-273O04.b B6Ng01-273O04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,441,776 - 64,442,181)(41,889,405 - 41,890,310)
sequence
gaattcctgaactttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctcagcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacgttgatggatttctgtatattgaacc
attcctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcgataacaagaactttattgaggatttttgca
tcaatattcataagggatattggtctgaagatctctatctttgtggggtc
tttttgtggtttaggtatcagagtaattgtggcttcatagaatgatttgc
gtaaagtaccttctgtttctattttgtggaatagtttgtgaagaactgga
attagatcttctttgaagttctgatagaaatctgcactaaacccatctgg
tcctgggcttttgttggttgggagactattaatgactgcttctatttctt
tgggggatatagggttgtttagatcattaacctgatcttgattcaacttt
ggtacctggtatatgtctagaaacttctccatttcatccaggttctccag
ttttgttgaatataatcttttgtagaaggatatgatggtgttttggattt
cttcaggatctgttgttatgtcttccttttcatttctgattttgttaatt
agaatgcttttccctgtgccctctagtgagtctggctaaagggtttgtct
atcttgttgattttctcaaagaaccagctcctcaattggttgattctctg
aatagttcttcttgtttccacttggttgatttcgcccctgagtttgatta
tttcctgccatctactcctcttgggtgaatttgcttcctttttgtctaga
gcttttaggtgtgttgtcagctgctaatgtgtgctctcttctagtttctt
tttggaggcactcaagctatgagtttcctcttagaaatg
gaattccttgcaaataggagcctggtatacctgtcctctgagagactctg
ccagagctagaccaatacagatgcagatgcacacagccaaccattggact
gagcctgggacctcaatggaagagttaggggaagggctgaaggagctgaa
ggggattggaaccctatatgaagaacaacaatatcaactaactgaatcct
tcagagtttccagggactaaaccaccaaccaaagaataatactactattt
cagtatgctatgcctttgaacatgaaatgtctctaaaaataatctctgta
agaaagaaaagaagtgagatccctatttaaacttaggcggcttagtgaac
actttcaatatgctaataaatatatctgatgacctttaaaaattttttta
aactactgtccaaataatgacctattatcttcaagattttgaagtgatct
gtttctaaggagagggtatctactatgcacagagtttccccaggtgcaca
agagaaagagaatttgtttttatacaaagaccaaaataaagttttctgtg
ctacaattggatatatttggaaaatgaggttttgagacagtattttctga
agccatttagtagtttctaactggctcctaaagaaaagagtgtgatgaag
tatttctacagattattattcataagagaagaactaaattgtttagaaga
cagtctataattagttaccttatctttactgaggattaaggtagttttat
aatttcacatggtaaatgtgattgatagtggtgagtgactggccactttg
tttactgctcaagttgaatagcctgactactggatcatccttgtgctgtt
ggtagctgctgcaacgtgtaacaaatcttgctttgctttcactgacagtt
tgccttaggaatgggagaaatctacaaggcagcacacatttgggagcaac
agtgttccaacatttctcaagtgtatattcagttgtctctctggcaccat
ctatatattaacccattagtgattggagacaaaccctgtactgtccgctc
atcagtgactggtgtgcatggaaaaagaagtaatgatggagtcttgcttt
actgcacatatatttggaatgttaactctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64441776_64442181
seq2: B6Ng01-273O04.b_629_1034 (reverse)

seq1  CATTTCTAAGAGGGAAACTCATAGCTCTGAGTACCTCCAAAAAGAAAC-G  49
      ||||||||||| |||||||||||||| ||||| |||||||||||||||  
seq2  CATTTCTAAGA-GGAAACTCATAGCT-TGAGTGCCTCCAAAAAGAAACTA  48

seq1  GGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA  99
      | |||||||||| | ||||||| |||||||||| |||||||||||||| |
seq2  GAAGAGAGCACACATTAGCAGC-TGACAACACACCTAAAAGCTCTAGACA  97

seq1  AAAAGGAAGCAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAGCAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAA  147

seq1  CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAAT  199
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  CTCAGGGGCGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAGAGAAT  197

seq1  TAACCAAAGGAGGAGTTGGTTCTTTCAGAAAATCAACAAGATAGATAAAC  249
       ||||||  |||||| ||||||||| ||||||||||||||||||| ||||
seq2  CAACCAATTGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGACAAAC  247

seq1  CC-TTAGCTAGACTCACTAGAGGGCACAGAGACAA-AATCCTAATTAACA  297
      || ||||| |||||||||||||||||||| || ||  || ||||||||||
seq2  CCTTTAGCCAGACTCACTAGAGGGCACAGGGAAAAGCATTCTAATTAACA  297

seq1  AAATCAGAACTGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA  347
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  AAATCAGAAATGAAAAGGAAGACATAACAACAGATCCTGAAGAAATCCAA  347

seq1  AACACCATCAGATCCTACTACAAAAGGCTATACTCAACAAAACTGGAAAA  397
      |||||||||| ||||| |||||||||  |||| |||||||||||||| ||
seq2  AACACCATCATATCCTTCTACAAAAGATTATATTCAACAAAACTGGAGAA  397

seq1  CCTGGACGA  406
      |||||| ||
seq2  CCTGGATGA  406

seq1: chr15_41889405_41890310
seq2: B6Ng01-273O04.g_302_1193

seq1  ATACTACTATTTCAGTATGCTATGCCTTTGAACATGAAATGTCTCTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTATTTCAGTATGCTATGCCTTTGAACATGAAATGTCTCTAAAA  50

seq1  ATAATCTCTGTAAGAAAGAAAAGAAGTGAGATCCCTATTTAAACTTAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTGTAAGAAAGAAAAGAAGTGAGATCCCTATTTAAACTTAGGC  100

seq1  GGCTTAGTGAACACTTTCAATATGCTAATAAATATATCTGATGACCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTGAACACTTTCAATATGCTAATAAATATATCTGATGACCTTTA  150

seq1  AAAATTTTTTTAAACTACTGTCCAAATAATGACCTATTATCTTCAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTTTAAACTACTGTCCAAATAATGACCTATTATCTTCAAGATT  200

seq1  TTGAAGTGATCTGTTTCTAAGGAGAGGGTATCTACTATGCACAGAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGATCTGTTTCTAAGGAGAGGGTATCTACTATGCACAGAGTTTC  250

seq1  CCCAGGTGCACAAGAGAAAGAGAATTTGTTTTTATACAAAGACCAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGCACAAGAGAAAGAGAATTTGTTTTTATACAAAGACCAAAATA  300

seq1  AAGTTTTCTGTGCTACAATTGGATATATTTGGAAAATGAGGTTTTGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCTGTGCTACAATTGGATATATTTGGAAAATGAGGTTTTGAGAC  350

seq1  AGTATTTTCTGAAGCCATTTAGTAGTTTCTAACTGGCTCCTAAAGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTCTGAAGCCATTTAGTAGTTTCTAACTGGCTCCTAAAGAAAAG  400

seq1  AGTGTGATGAAGTATTTCTACAGATTATTATTCATAAGAGAAGAACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATGAAGTATTTCTACAGATTATTATTCATAAGAGAAGAACTAAA  450

seq1  TTGTTTAGAAGACAGTCTATAATTAGTTACCTTATCTTTACTGAGGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGAAGACAGTCTATAATTAGTTACCTTATCTTTACTGAGGATTA  500

seq1  AGGTAGTTTTATAATTTCACATGGTAAATGTGATTGATAGTGGTGAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTTTTATAATTTCACATGGTAAATGTGATTGATAGTGGTGAGTGA  550

seq1  CTGGCCACTTTGTTTACTGCTCAAGTTGAATAGCCTGACTACTGGATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACTTTGTTTACTGCTCAAGTTGAATAGCCTGACTACTGGATCAT  600

seq1  CCTTGTGCTGTTGGTAGCTGCTGCAACGTGTAACAAATCTTGCTTTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCTGTTGGTAGCTGCTGCAACGTGTAACAAATCTTGCTTTGCTT  650

seq1  TCACTGACAGTTTGCCTTAGGAAT-GGAGAAATCTACAAGGCAGCACACA  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCACTGACAGTTTGCCTTAGGAATGGGAGAAATCTACAAGGCAGCACACA  700

seq1  TTT-GGAGCAACAGTGTTCCAACATTTCTCAAGTTGTATATTCAGTTGTC  748
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGGGAGCAACAGTGTTCCAACATTTCTCAAG-TGTATATTCAGTTGTC  749

seq1  TCTTCTGGCAACCCATCCTATATTATTAACCCATTAGTGATTGGAGACAA  798
      || |||||||  |||| ||||| ||||||||||||||||||||||||| |
seq2  TC-TCTGGCA--CCAT-CTATA-TATTAACCCATTAGTGATTGGAGAC-A  793

seq1  AACCCTGTTACTGTTCCGCTCATCAGGTGACTGTTGGTGCATTGAAAAAG  848
      ||||||| ||||| ||||||||||| ||||||| | |||||| |||||||
seq2  AACCCTG-TACTG-TCCGCTCATCA-GTGACTGGT-GTGCATGGAAAAAG  839

seq1  AAGTAGTGATGGAGTCTTTGCTTTACCTGCACATATATTTGAGAATCTTT  898
      ||||| |||||||||| |||||||| ||||||||||||||| |||| || 
seq2  AAGTAATGATGGAGTC-TTGCTTTA-CTGCACATATATTTG-GAATGTT-  885

seq1  AAACTCTG  906
       |||||||
seq2  -AACTCTG  892