BAC Information

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BAC

Clone NameB6Ng01-275J02
Chromosome15 (Build37)
Map Location 47,921,775 - 47,922,933
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275J02.bB6Ng01-275J02.g
ACCGA076573GA076574
length9761,188
definitionB6Ng01-275J02.b B6Ng01-275J02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
tactggagtcgaccttcttgagtttttatatatattggatattagtcccc
tatctgatttagcataggtaaagatctttcccaatctgttcttggtcttt
ttgtcttattgacggttgtcttttgccttgcagaagctttgcacctttat
gaggtcctatttgtcgattctcaatcttacaacacaagccattgctgttc
tattcaggaactttcccctgtacccatatcgtcgaggcttttccctactt
tctcctctataagtttcagtgtctctggttttatgtggagttccttaatc
cacttagatttgaccttagtacaaggagataggaatggatcaattcgcat
tcttctacaatataaccgccagttgtgccagcaccatttgttgaaaatgc
tgtcttttttccactggatgattttagctctcttgtcaaaaattaagtga
ccataggtgtgtgggttcatctctgagtcttcaattctattccattggtc
tacttgtttgtcactataccagtaccatgcagtttttgtttttttttttt
ttttgttttttttgttttttatcacaattgctctgtagtacagctttagg
tcaggcatggtgattccaccagaggttcttttatccttgagaagagtttt
tgctatcctaggttttttgttatttcagatgaatctgctgattgcccttt
ctaattcgttgaagaatggagttgggattttgatggggattgcattgaat
ctgtagattgcttttggcaagatagccattttttactatattgatccctg
ccaatccatgagcatgggagacctttccatcttctgagatcttctttaaa
tttctttcttcagagatttgagttcttatcatacagattcttcacttccc
ttagttagagtcacgccaagtatttt

atgaagggaaaatgggatcccggcgggagttccatctcctccttgctggg
actcccatcttctatttcctgccttttttgctaatagcccatcagatttt
atggacaggtgatgcttccacacagtacacaagagaatctctatacattc
atgaggattttaagcttggtatttaggctaggctggctagctgatgatgc
aaggtgtcgcctatctctacactatcagtgttgggattacaagcatgtgc
cataatgtctggtttttatttatttttcttaattaaatataattatatca
tttgtctttttccttttcttcctcctgttcctgcatgtagctactagcca
ttgctttcttaaaatccttggcttcctatttttaaattactgtgctatgt
gtgcatctgtgtgtatttgtgtatgtgttattgttgtttctaaatatata
gtaaatatgacttctcattttatatattgttgcttgaatataagatttca
caagtgaccatttagcattgctacatagaaccacacagtatcctgtcttc
tacactaacattttgttaaattaatttattatttttacactccacatttt
atccccaccctgccccctgcccaccctccaagtgctccacttcccatatc
tcctccctaaacccctgtctacacttggatgtccccacccccaaccccac
ctgacctataaactctctggggcctccaatcccttgagggttaggtgcat
catctctgaatgaacacaaacattttataaacaattaactacagaacttg
ttcatctttgtttagtttgtgacaatgttcctgtatgaggagaacagaaa
actgttttgggcatcagttctctctttcccactgtgtggacactgaggaa
gtcaatatgatcgatcagtctttcagcaaaagctttcaagctgcccagtc
ttgcctgacatgattttgtggatgcttggcactgaacatagccacacttt
actgactgagctaactctaacagtcccgggtttatttacttaagaaatag
cttagacaggagtatcttaaaatagttacagatgttttattaaatgtaca
attcttagttggccctagttatatatctgaagaaactacttactttattg
taatgtttaatggcacgaattttcatcaaactcataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47921775_47922933
seq2: B6Ng01-275J02.g_30_1188

seq1  TTCCATCT-CTC--TGCTGGGACTCCCATCTTCTATTTCCTGCCTTTTTT  47
      |||||||| |||  ||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTCCTCCTTGCTGGGACTCCCATCTTCTATTTCCTGCCTTTTTT  50

seq1  GCTAATAGCCCATCAGATTTTATGGACAGGTGATGCTTCCACACAGTACA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAGCCCATCAGATTTTATGGACAGGTGATGCTTCCACACAGTACA  100

seq1  CAAGAGAATCTCTATACATTCATGAGGATTTTAAGCTTGGTATTTAGGCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAATCTCTATACATTCATGAGGATTTTAAGCTTGGTATTTAGGCT  150

seq1  AGGCTGGCTAGCTGATGATGCAAGGTGTCGCCTATCTCTACACTATCAGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCTAGCTGATGATGCAAGGTGTCGCCTATCTCTACACTATCAGT  200

seq1  GTTGGGATTACAAGCATGTGCCATAATGTCTGGTTTTTATTTATTTTTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGATTACAAGCATGTGCCATAATGTCTGGTTTTTATTTATTTTTCT  250

seq1  TAATTAAATATAATTATATCATTTGTCTTTTTCCTTTTCTTCCTCCTGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATATAATTATATCATTTGTCTTTTTCCTTTTCTTCCTCCTGTT  300

seq1  CCTGCATGTAGCTACTAGCCATTGCTTTCTTAAAATCCTTGGCTTCCTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGTAGCTACTAGCCATTGCTTTCTTAAAATCCTTGGCTTCCTAT  350

seq1  TTTTAAATTACTGTGCTATGTGTGCATCTGTGTGTATTTGTGTATGTGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTACTGTGCTATGTGTGCATCTGTGTGTATTTGTGTATGTGTT  400

seq1  ATTGTTGTTTCTAAATATATAGTAAATATGACTTCTCATTTTATATATTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTTCTAAATATATAGTAAATATGACTTCTCATTTTATATATTG  450

seq1  TTGCTTGAATATAAGATTTCACAAGTGACCATTTAGCATTGCTACATAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGAATATAAGATTTCACAAGTGACCATTTAGCATTGCTACATAGA  500

seq1  ACCACACAGTATCCTGTCTTCTACACTAACATTTTGTTAAATTAATTTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAGTATCCTGTCTTCTACACTAACATTTTGTTAAATTAATTTAT  550

seq1  TATTTTTACACTCCACATTTTATCCCCACCCTGCCCCCTGCCCACCCTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACACTCCACATTTTATCCCCACCCTGCCCCCTGCCCACCCTCC  600

seq1  AAGTGCTCCACTTCCCATATCTCCTCCCTAAACCCCTGTCTACACTTGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTCCACTTCCCATATCTCCTCCCTAAACCCCTGTCTACACTTGGA  650

seq1  TGTCCCCACCCCCAACCCCACCTGACCTATAAACTCTCTGGGGCCTCCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCACCCCCAACCCCACCTGACCTATAAACTCTCTGGGGCCTCCAA  700

seq1  TCCCTTGAGGGTTAGGTGCATCATCTCTGAATGAACACAAACATTTTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGAGGGTTAGGTGCATCATCTCTGAATGAACACAAACATTTTATA  750

seq1  AACAATTAACTACAGAACTTGTTCATCTTTGTTTAGTTTGTGACAATGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAACTACAGAACTTGTTCATCTTTGTTTAGTTTGTGACAATGTT  800

seq1  CCTGTATGAGGAGAACAGAAAACTGTTTTGGGCATCAGTTCTCTCTTTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGAGGAGAACAGAAAACTGTTTTGGGCATCAGTTCTCTCTTTCC  850

seq1  CACTGTGTGGACACTGAGGAAGTC-ATATGATCGATCAGTCTTTCAGCAA  896
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACTGTGTGGACACTGAGGAAGTCAATATGATCGATCAGTCTTTCAGCAA  900

seq1  AAGCTTTCAAGCTGCCCAGTCTTGCCTGACATGATTTTGTGGATGCTTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCAAGCTGCCCAGTCTTGCCTGACATGATTTTGTGGATGCTTGG  950

seq1  CACTGAACATAGCCACACTTTACTGACTGAGCTAACTCT-ACAGTCCCGG  995
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACTGAACATAGCCACACTTTACTGACTGAGCTAACTCTAACAGTCCCGG  1000

seq1  GTTTATTTACTTAAG-AATAGCTTAGAACAGAGTATCTTAAAATAGTTAC  1044
      ||||||||||||||| |||||||||||   ||||||||||||||||||||
seq2  GTTTATTTACTTAAGAAATAGCTTAGACAGGAGTATCTTAAAATAGTTAC  1050

seq1  AAGATG-TTTATTAAATTGTAC-ATTCTAGTTTGGCCCTAGTTATATATC  1092
       ||||| ||||||||| ||||| |||||   |||||||||||||||||| 
seq2  -AGATGTTTTATTAAA-TGTACAATTCTTAGTTGGCCCTAGTTATATAT-  1097

seq1  CTGAAGAAAACTAACTTACTTTAATTTGTAAATGTTAATGGCACGAATTT  1142
      |||||| ||||| ||||||||||  ||||||   |||||||||||||  |
seq2  CTGAAG-AAACT-ACTTACTTTA--TTGTAATGTTTAATGGCACGAA--T  1141

seq1  TTTCATCAAA-TCATAAC  1159
      |||||||||| |||||||
seq2  TTTCATCAAACTCATAAC  1159


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