BAC Information

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BAC

Clone NameB6Ng01-276E01
Chromosome15 (Build37)
Map Location 3,673,031 - 3,674,083
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674207, LOC666163, EG666167, Sepp1, LOC100039139, Ghr
Downstream geneLOC223278, Fbxo4, AW549877, LOC100039196, Oxct1, Plcxd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276E01.bB6Ng01-276E01.g
ACCGA077080GA077081
length1,1881,066
definitionB6Ng01-276E01.b B6Ng01-276E01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtctaccttcttgagttctttatatattttggatattagttccc
tatctgatttaagatatgtgaagatcctttcccaatctgttggtggcctt
tctgtcatattgatggtgtcttttgccttaaagaagttttgcagttttat
gaggccccatttgtcaattctcgatcttacagcacaagccattgctgttc
tattcaggaattttccccctgtacccatatcttcgtggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttgat
tcacttatatttgaccttagtacaaggagataggaatggatcaattcgca
ttcttctacatgataaccaccagttgtgctagtaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaatatcaaatg
accataggtatgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatggagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttgt
atccttgagaagagtttttgctatcctggttttttgttattccagatgaa
tttgcagattgctctttctaattcgttgaagaattgagttggaaatttga
tgggaattgcattgaatctgtagattgcttttaacaagatagccattttt
acaatgttgatcctgccaatccatgagcatgggagatctttccatcttct
gagatcttctttaattactttcttcagagacttgaagttcttatcataca
gatctttcacttccttagttagagtcacaccaaaatatgtatattatttt
gtgactatgagaaggtgttgtttccctaatttctttctcagctgtttatt
cttggtgtaagagaaaggccatgaccttgtttgagtaatttttatatcca
agctactcacggagctgtttaatcagcttaggagtctctgggtggaacct
tataagggctcttatatatacgaatcaaatcaactggcaaatggaattgg
acttcctctttcaatgaatcccgtgagatcctcctctg
gaattccaagaccagggtcagctcaaggactacctaggacattggtgaag
accaggaaacaaagttcaattttgcttaggtatttggcaagtcattgctt
ggaggcacctataataaaacaatactgaaaggaatcagacagatccatac
tctgactaatgcaagttcaagattggagcattcgttttccaggatgccac
agttccaggagactaagtttctgtgaacttttcacttcgggactgcatct
aggtttctaggcctgtcacatgagtcactactgcagtgggtgtagcacac
acacacacacacacacacacacacacactcgacaatgtaaaaagaaatta
aaggtagaatatatagcatattaaactttcactaaatgtaaaaaggtata
tataagtttaggactagagtgagacagctttgtgtgtaggtacagactgt
atttctgaaatcactgtagcagtttgaatgggaacatctattctgcattc
atgtctctgaactcatggtcccaagctcacatcactgtttggggaatgtt
ttagggggtatagctttgtgggaagaagtttgtcaccagaggcaggtttt
gagaactgaacagcctggactgctaaatgcttgtgcttagtggtcaagat
tccaagtgtgagcattcagcttgctgctccagccatgatgcctgcccact
gctgaacctccccaccatgatggtcctcttgctgaccctgccccctgcca
tgatactggtgaattctcatctcctgaagccatgagatcaaagaacccct
tccctctataagttgccttggccgtggtgttttatcaaagcaagaaaaga
ataactaatacagtcactaaattgagagggaagttaattgttggaaagca
ccaagatgacaagacaattcatggaggcatgtggatcttctaaactaatg
tatttacttcatttagttctttctcattgcattaatgtgacataagttcc
accaaaatggaatagcaaattaaaaataataagtaatagttgtgggtcaa
ctttctggcctatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_3673031_3674083
seq2: B6Ng01-276E01.g_68_1133

seq1  GAATTCCAAGACCAGGGTCAGCTCAAGGACTACCTAGGACATTGGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACCAGGGTCAGCTCAAGGACTACCTAGGACATTGGTGAAG  50

seq1  ACCAGGAAACAAAGTTCAATTTTGCTTAGGTATTTGGCAAGTCATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAACAAAGTTCAATTTTGCTTAGGTATTTGGCAAGTCATTGCTT  100

seq1  GGAGGCACCTATAATAAAACAATACTGAAAGGAATCAGACAGATCCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACCTATAATAAAACAATACTGAAAGGAATCAGACAGATCCATAC  150

seq1  TCTGACTAATGCAAGTTCAAGATTGGAGCATTCGTTTTCCAGGATGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTAATGCAAGTTCAAGATTGGAGCATTCGTTTTCCAGGATGCCAC  200

seq1  AGTTCCAGGAGACTAAGTTTCTGTGAACTTTTCACTTCGGGACTGCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGAGACTAAGTTTCTGTGAACTTTTCACTTCGGGACTGCATCT  250

seq1  AGGTTTCTAGGCCTGTCACATGAGTCACTACTGCAGTGGGTGTAGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTAGGCCTGTCACATGAGTCACTACTGCAGTGGGTGTAGCACAC  300

seq1  ACACACACACACACACACACACACACACTCGACAATGTAAAAAGAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACTCGACAATGTAAAAAGAAATTA  350

seq1  AAGGTAGAATATATAGCATATTAAACTTTCACTAAATGTAAAAAGGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAATATATAGCATATTAAACTTTCACTAAATGTAAAAAGGTATA  400

seq1  TATAAGTTTAGGACTAGAGTGAGACAGCTTTGTGTGTAGGTACAGACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTTAGGACTAGAGTGAGACAGCTTTGTGTGTAGGTACAGACTGT  450

seq1  ATTTCTGAAATCACTGTAGCAGTTTGAATGGGAACATCTATTCTGCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAATCACTGTAGCAGTTTGAATGGGAACATCTATTCTGCATTC  500

seq1  ATGTCTCTGAACTCATGGTCCCAAGCTCACATCACTGTTTGGGGAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTGAACTCATGGTCCCAAGCTCACATCACTGTTTGGGGAATGTT  550

seq1  TTAGGGGGTATAGCTTTGTGGGAAGAAGTTTGTCACCAGAGGCAGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGGTATAGCTTTGTGGGAAGAAGTTTGTCACCAGAGGCAGGTTTT  600

seq1  GAGAACTGAACAGCCTGGACTGCTAAATGCTTGTGCTTAGTGGTCAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGAACAGCCTGGACTGCTAAATGCTTGTGCTTAGTGGTCAAGAT  650

seq1  TCCAAGTGTGAGCATTCAGCTTGCTGCTCCAGCCATGATGCCTGCCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGTGAGCATTCAGCTTGCTGCTCCAGCCATGATGCCTGCCCACT  700

seq1  GCTGAACCTCCCCACCATGATGGTCCTCTTGCTGACCCTGCCCCCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACCTCCCCACCATGATGGTCCTCTTGCTGACCCTGCCCCCTGCCA  750

seq1  TGATACTGGTGAATTCTCATCTCCTGAAGCCATGAGATCAAAGAACCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGGTGAATTCTCATCTCCTGAAGCCATGAGATCAAAGAACCCCT  800

seq1  TCCCTCTATAAGTTGCCTTGGCCGTGGTGTTTTATCAAAGCAAGAAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTATAAGTTGCCTTGGCCGTGGTGTTTTATCAAAGCAAGAAAAGA  850

seq1  ATAACTAATACAGTCACTAAATTGAGAGGGAAGT--AATGTTGGAAAGCA  898
      ||||||||||||||||||||||||||||||||||  | ||||||||||||
seq2  ATAACTAATACAGTCACTAAATTGAGAGGGAAGTTAATTGTTGGAAAGCA  900

seq1  CCAAGATGACAAGACAATTCAT-GAGGCATGTGGATCTTCTAAACTATTG  947
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  CCAAGATGACAAGACAATTCATGGAGGCATGTGGATCTTCTAAACTAATG  950

seq1  -ATTTAC-TCATTTAGTTC-TTCTCATTGCATTAATGTGACATA--GTCC  992
       |||||| ||||||||||| ||||||||||||||||||||||||   |||
seq2  TATTTACTTCATTTAGTTCTTTCTCATTGCATTAATGTGACATAAGTTCC  1000

seq1  AC--AAATGGAATAGCAA--TTAAAATAATAAGTAATAGTTGTGGGTCAA  1038
      ||  ||||||||||||||  | ||||||||||||||||||||||||||||
seq2  ACCAAAATGGAATAGCAAATTAAAAATAATAAGTAATAGTTGTGGGTCAA  1050

seq1  C-TTCTGCCCTATTTT  1053
      | ||||| ||||||||
seq2  CTTTCTGGCCTATTTT  1066