BAC Information

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BAC

Clone NameB6Ng01-280L19
Chromosome15 (Build37)
Map Location 43,959,700 - 43,960,863
singlet/doubletsinglet
Overlap genenone
Upstream geneRspo2, LOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
Downstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280L19.bB6Ng01-280L19.g
ACCGA080390GA080391
length1,158497
definitionB6Ng01-280L19.b B6Ng01-280L19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatatatctatatgtacaatttaacttcaaactaaaataaaagg
taaagttataggcattcacattttttgcttactgagcagacaaatgcagg
ctaggctgggacaacacttctgaattcaagcaagtactaatccattatgt
tatcttgtctctacttttccaatgactatgaggtttctcatacttctcaa
taactctcttcctatttaaatacaattgggtggattctgttgtctataac
tgacaggaagcatacaaaatgtctgcttagcagtgacaaagagtatacct
gattgaatcttaaaagatgaatagtatttatcactaaaagacaacaaaag
gggagctgaggtaaaataaggaaagacatgtgaaaaactgcaagataggg
acgagaggtagtttaacttggggagagtagcatgaatcaagaaaagctgt
agaacagaagtaatgtttatggtcagatttataggctatggaatgcagag
ttggatctgccttctgaaactgtcatgtcgggaaagcagttattccttct
gtttgggatgaccacttcctcttcacataaagaaagatgctgagcatagc
tgcatcactgatttttgctgcaaacctaagctcttcaggcagtaaatcac
ctttacacactttactaaatagtttgcagattgtgggaacacacagcttt
gaattgaaatttccattttctccactcaaatgctattcacccgggttcct
ctttacctgtctccatcctttttatgcaatgaccagagacagtcctgcaa
tccaaggcttccaagagcaagcagaaaggcttacactgaactcaccatat
ctttctgaatccttaggaaaatgaacagtaaacacttagctcctaaagga
tgagaggtgactccagcctctgattgggttgggatgaagttaataatccc
actgaaggtaagcgcttcaaaataaaactacaaaatcctaatagtgcttc
tgatttgttttgttttacttgtttgacactactagccctttgtgtatcat
ttctttttgaaataaaaatgggtgtattctgtgactcacattcctcattc
tcctcctttttattttggttcacgtatgtttcatatttgaagctcagtta
tttccata

cagggatggaaatggagaggagcctgagaaaaagaagtccagagacaggc
gcaaagtgggatcctgcttgaggggaagtcccaaggcctcacactattat
tgaggcttgactgccccccaaaagcccaataagcagctaaaagagtcaga
tgcagatatttgcacccaaccaatggacagaagcagctaacccctgtgtt
gaattagggaaggctgaaagtagttgaggagaagggcgatcctgcagaag
gaccagaagtctcaattaatctggaccccccgagatatctcaaacactgg
accaccaaacaggcagcatacaccagatgatatgaggcccccaacataca
tacagtagaggactgccgggtttgtgttcattcagagatgatgcacctaa
ccctcaagagactggaggcccaagggagtttagaggtcaggtggggtgga
ggcatccatgtggagacaggtgggttgggaaggaggtgtgggatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43959700_43960863
seq2: B6Ng01-280L19.b_45_1202

seq1  GAATTCCATATATCTATATGTACAATTTAACTTCAAACTAAAATAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATATCTATATGTACAATTTAACTTCAAACTAAAATAAAAGG  50

seq1  TAAAGTTATAGGCATTCACATTTTTTGCTTACTGAGCAGACAAATGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTATAGGCATTCACATTTTTTGCTTACTGAGCAGACAAATGCAGG  100

seq1  CTAGGCTGGGACAACACTTCTGAATTCAAGCAAGTACTAATCCATTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGGGACAACACTTCTGAATTCAAGCAAGTACTAATCCATTATGT  150

seq1  TATCTTGTCTCTACTTTTCCAATGACTATGAGGTTTCTCATACTTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTCTCTACTTTTCCAATGACTATGAGGTTTCTCATACTTCTCAA  200

seq1  TAACTCTCTTCCTATTTAAATACAATTGGGTGGATTCTGTTGTCTATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTCTTCCTATTTAAATACAATTGGGTGGATTCTGTTGTCTATAAC  250

seq1  TGACAGGAAGCATACAAAATGTCTGCTTAGCAGTGACAAAGAGTATACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAAGCATACAAAATGTCTGCTTAGCAGTGACAAAGAGTATACCT  300

seq1  GATTGAATCTTAAAAGATGAATAGTATTTATCACTAAAAGACAACAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATCTTAAAAGATGAATAGTATTTATCACTAAAAGACAACAAAAG  350

seq1  GGGAGCTGAGGTAAAATAAGGAAAGACATGTGAAAAACTGCAAGATAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGAGGTAAAATAAGGAAAGACATGTGAAAAACTGCAAGATAGGG  400

seq1  ACGAGAGGTAGTTTAACTTGGGGAGAGTAGCATGAATCAAGAAAAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGGTAGTTTAACTTGGGGAGAGTAGCATGAATCAAGAAAAGCTGT  450

seq1  AGAACAGAAGTAATGTTTATGGTCAGATTTATAGGCTATGGAATGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAAGTAATGTTTATGGTCAGATTTATAGGCTATGGAATGCAGAG  500

seq1  TTGGATCTGCCTTCTGAAACTGTCATGTCGGGAAAGCAGTTATTCCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTGCCTTCTGAAACTGTCATGTCGGGAAAGCAGTTATTCCTTCT  550

seq1  GTTTGGGATGACCACTTCCTCTTCACATAAAGAAAGATGCTGAGCATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGATGACCACTTCCTCTTCACATAAAGAAAGATGCTGAGCATAGC  600

seq1  TGCATCACTGATTTTTGCTGCAAACCTAAGCTCTTCAGGCAGTAAATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACTGATTTTTGCTGCAAACCTAAGCTCTTCAGGCAGTAAATCAC  650

seq1  CTTTACACACTTTACTAAATAGTTTGCAGATTGTGGGAACACACAGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACACTTTACTAAATAGTTTGCAGATTGTGGGAACACACAGCTTT  700

seq1  GAATTGAAATTTCCATTTTCTCCACTCAAATGCTATTCACCCGGGTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAAATTTCCATTTTCTCCACTCAAATGCTATTCACCCGGGTTCCT  750

seq1  CTTTACCTGTCTCCATCCTTTTTATGCAATGACCAGAGACAGTCCTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTGTCTCCATCCTTTTTATGCAATGACCAGAGACAGTCCTGCAA  800

seq1  TCCAAGGCTTCCAAGAGCAAGCAGAAAGGCTTACACTGAACTCACCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCTTCCAAGAGCAAGCAGAAAGGCTTACACTGAACTCACCATAT  850

seq1  CTTTCTGAATCCTTAGGAAAATGAACAGTAAACACTTAGCTCCT-AAGGA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTCTGAATCCTTAGGAAAATGAACAGTAAACACTTAGCTCCTAAAGGA  900

seq1  TGAGAGGTGACTCCAGCCTCTGATTGGGTT-GGATGAAGTTAATAATCCC  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAGAGGTGACTCCAGCCTCTGATTGGGTTGGGATGAAGTTAATAATCCC  950

seq1  ACTGAAGGTAAGCGCTTCAAAATAAAACTACAAAATCCTAATAGTGCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTGAAGGTAAGCGCTTCAAAATAAAACTACAAAATCCTAATAGTGC-TT  999

seq1  CTGATTTGTTTTGTTTTACTTGTTTTGACAACTACTAGGCCTTTGTGTAT  1048
      |||||||||||||||||||||| |||||| |||||||| |||||||||||
seq2  CTGATTTGTTTTGTTTTACTTG-TTTGAC-ACTACTAGCCCTTTGTGTAT  1047

seq1  CAATTTCTTTTGGAAATAAAAAATTGTGTGTATTTTCTGTGACTCAACAT  1098
      | ||||||||| ||||||||||  || |||||  ||||||||||| ||||
seq2  C-ATTTCTTTTTGAAATAAAAA--TGGGTGTA--TTCTGTGACTC-ACAT  1091

seq1  T-CTCCATCT-CTCCTTTTTA-TTTGTTTCAACGTATGTTTTCATA-TTG  1144
      | |||  ||| |||||||||| |||| ||| ||||||| ||||||| |||
seq2  TCCTCATTCTCCTCCTTTTTATTTTGGTTC-ACGTATG-TTTCATATTTG  1139

seq1  TAGCTCATGTTATTTTCATA  1164
       |||||| ||||||| ||||
seq2  AAGCTCA-GTTATTTCCATA  1158


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