BAC Information

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BAC

Clone NameB6Ng01-284D22
Chromosome15 (Build37)9 (Build37)
Map Location 83,989,951 - 83,990,90488,852,258 - 88,853,454
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5
Downstream genePnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284D22.bB6Ng01-284D22.g
ACCGA082996GA082997
length1,1161,188
definitionB6Ng01-284D22.b B6Ng01-284D22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,989,951 - 83,990,904)(88,852,258 - 88,853,454)
sequence
gaattcttgggcaccactgggttctgcagactttggatacctgggtttac
aacactggctgaccccttgtactccctgaccaaagaaagtggagaattca
gatggacatcagaacatcagagagcctttaaagaggccctcttgtctgtg
ccagccttggcattgccagatctaaccaagcccttcatcctctatgttaa
tgagagggcaggggtggccagaggagttcttgctcaggctctagggccat
agaagaggccagtgacatatttgtttaagaagctagacccagtggccagc
ggatagcccacatgtttaaaggccgttgctgcagtagccttactttttaa
agatgccaacaaattaactttgggacagcaaataactgcggtagcacccc
ccactctcttgaaaatattatccgccagcccctagaccgatggatgacaa
acgcccagatgactcactaccagagtctgttgctgactgaacggtcatgt
ttgctcctcctgctatcctcaatcctgctaccttcctgcctgaaacggat
gactccttgcctgtttactgctgtgtggatatccttgcggaagaaactgg
gatccatagtgatttacgcaaccagccgtggccaggcgtcccaaactggt
acacagaagcagcttcctagtagaaggcccttcagatggctgaggggcgg
cccatcaacgtctacactgatagcagtttttatagaaactttttcaaaat
gggtagaggcctacccaatgaaaaaagaaactgccaatgttgtggttaag
aagattctagaagaaaaatttccacggaatatctaaaggtaataaggtct
cacagcctttgttgcccaggtaagtcagggactggccatccaactgggag
attaattaaattttacattgtgtttatagaccccagagttcagataggta
gaaggataaatagaactctaaaagagaccttgactaattgaccttagaga
cggtgagatgactgtacagccctcatcccttgctgtcgtgtcagaacaca
ctgagatatttagctcactcattgaatctgaatgggggggggggactcct
tgctcactgaaggggg
gaattcataatgaataacacaggagaatggatacggcagaatggaggttg
ggtatgtgtgatgactatatatattttttttctagtgaagaataggaatg
aagagtttccttactaattaaaacaaacaagaaagtaacaatcaaaggac
ttcagtctgtttgtatgccttatttttagatactctgagttaaaattaaa
caaaacaaaaatcccctgggtcatttccaatggcctatacttgaaatgtt
ttttaaggctttttaaaataagatttatacatttattttatgtatgtgat
tatactgtttttcttaatcttctacatttactattattttctccagtctc
ctttaccagtttgaagtgcatggttgaaatcataatgcctggtagaagat
taatatgattttccccctatcatcagcatttcagaggaaaagatagttcc
taaagctactgggatacattttagtagctgggtgtctgtagtctcagcta
ctcaaaggcaaagactagaggaacactgcttgagcacagggtaatttcaa
gaccaagtgtgggcaagacctatcacaaaaactaagaatgcaccgaagat
gaaactcagtgtctcaccctttggaaaccatgctttagtttgattcaagt
gactttcctacttccatactctttaatgaaacactttttctgtgtctttt
atggaataaagaagagttcttgttcattagctccacaggggtgagggact
atacctttatacacaacgctgtatcattcatgctcagcatcggccccatt
gtacagaaagtaccttgcacatagctattgctttcaggaactgacataga
aatctgaggcttgaactctgaattttcctacttattagaggcataaccta
ggtaaattacctaggaagtactccaagattcagacttcctatgtatgtgt
ataacataatatagcatgatgtaataatatagtataaacacattaaaatg
aagacataatacctgtacttaaaaactagaatacttctcatcacagtagt
ttgtgactatgtaaaatagaattggtaagtatgggacacatggcaagttt
ccagaagttgaatataagtttgaaactactaggtacgacagaagtccctt
tagaagttagcatacacctaattggtgcctttgggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83989951_83990904
seq2: B6Ng01-284D22.b_223_1161

seq1  AAACCCTTCATCCTCTATGTTAATGAGAGGGTGGGGGTGGCCAGAGGAGT  50
      || ||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AAGCCCTTCATCCTCTATGTTAATGAGAGGGCAGGGGTGGCCAGAGGAGT  50

seq1  TCTTACTCAGGCTCTAGGGCCATAGAAGAGTCCTGTGACATATTTGTCTA  100
      |||| ||||||||||||||||||||||||| || ||||||||||||| ||
seq2  TCTTGCTCAGGCTCTAGGGCCATAGAAGAGGCCAGTGACATATTTGTTTA  100

seq1  AGAAGCTGGACCCAGTGGCCAGCGGATAACTTACATGTTTAAAGGTGGTT  150
      ||||||| |||||||||||||||||||| |  |||||||||||||  |||
seq2  AGAAGCTAGACCCAGTGGCCAGCGGATAGCCCACATGTTTAAAGGCCGTT  150

seq1  GCTGCAGTAGCCTTACTCACTAAAGATGCCAACAAATTAACTTTAGGACA  200
      |||||||||||||||||   |||||||||||||||||||||||| |||||
seq2  GCTGCAGTAGCCTTACTTTTTAAAGATGCCAACAAATTAACTTTGGGACA  200

seq1  GCAAATAACTGTGGTAG---CCCCCACTCTCTTTTAAGCATTATCCGCCA  247
      ||||||||||| |||||   |||||||||||||  ||  |||||||||||
seq2  GCAAATAACTGCGGTAGCACCCCCCACTCTCTTGAAAATATTATCCGCCA  250

seq1  GCCCCCAGACCAATGGATGACAAATGCCCGGATGACCCACCCTACCAGAG  297
      ||||| ||||| |||||||||||| |||| |||||| ||  |||||||||
seq2  GCCCCTAGACCGATGGATGACAAACGCCCAGATGACTCA--CTACCAGAG  298

seq1  TCTGTTGCTGACTGAACGGGTCATGTTTGCTCCTCCTACTATCCTCAATC  347
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TCTGTTGCTGACTGAAC-GGTCATGTTTGCTCCTCCTGCTATCCTCAATC  347

seq1  CTACTACCTTGCTGCCTGAAACGGACGACTCCTTGCCTGTTTACTGCTGT  397
      || ||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  CTGCTACCTTCCTGCCTGAAACGGATGACTCCTTGCCTGTTTACTGCTGT  397

seq1  GCGGACATCCTTGCCGAAGAAACTGGGATCCATAGTGATCTACGTAACCA  447
      | ||| |||||||| |||||||||||||||||||||||| |||| |||||
seq2  GTGGATATCCTTGCGGAAGAAACTGGGATCCATAGTGATTTACGCAACCA  447

seq1  GCCGTGGCCAGACGTTCCAAACTGGTACACAGAAGCAGCTTCCTAGTAGA  497
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  GCCGTGGCCAGGCGTCCCAAACTGGTACACAGAAGCAGCTTCCTAGTAGA  497

seq1  AGGCCCTTCAGATGGCTGAGGGGCGGCCCATCAACATCTATACCAATAGC  547
      ||||||||||||||||||||||||||||||||||| |||| ||  |||||
seq2  AGGCCCTTCAGATGGCTGAGGGGCGGCCCATCAACGTCTACACTGATAGC  547

seq1  AGTTTTTATAGATACCTTTTCAAGATGGGTATAGGCCTACCCAACAAAAA  597
      |||||||||||| || ||||||| ||||||| ||||||||||||  ||||
seq2  AGTTTTTATAGAAACTTTTTCAAAATGGGTAGAGGCCTACCCAATGAAAA  597

seq1  AAGAAACTGCCAATGTTGTGGTTAAGAAGATCTTAAAAGAAAATTTTCCA  647
      |||||||||||||||||||||||||||||||  || ||||||| ||||||
seq2  AAGAAACTGCCAATGTTGTGGTTAAGAAGATTCTAGAAGAAAAATTTCCA  647

seq1  AGGAATACCT-AAGGTAATAAGGTCTCACAGCCTTTGTTGCCCAGGTAAG  696
       |||||| || |||||||||||||||||||||||||||||||||||||||
seq2  CGGAATATCTAAAGGTAATAAGGTCTCACAGCCTTTGTTGCCCAGGTAAG  697

seq1  TCAGGGACTGGCCATCCAACTGGG-GATTAATTGAATTTTACATTGTGTT  745
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  TCAGGGACTGGCCATCCAACTGGGAGATTAATTAAATTTTACATTGTGTT  747

seq1  TATAGACCCCAGAGTTCAGGATAGGTAAAAAGGATAAATA------AAAA  789
      |||||||||||||||||| ||||||| | |||||||||||       |||
seq2  TATAGACCCCAGAGTTCA-GATAGGT-AGAAGGATAAATAGAACTCTAAA  795

seq1  GGAGACCTTGACTAAATTGACCTTAGAGACCGGCGAGAATGACTAGACAG  839
       |||||||||||| ||||||||||||||| ||| ||| ||||||  ||||
seq2  AGAGACCTTGACT-AATTGACCTTAGAGA-CGGTGAG-ATGACTGTACAG  842

seq1  TCCTCCTTCCCTTTGCCTTGTTCCACGTCAGGAACACACTGGGAAAATTT  889
       |||| |  || ||||  |||  |  |||| |||||||||| || |  ||
seq2  CCCTCAT--CCCTTGC--TGT--CGTGTCA-GAACACACTGAGATA--TT  883

seq1  AAGCTCACTCCATATGAAAGCCTGTGCGGGGGTGGGGGAGACCTCCCCTG  939
       |||||||| ||| ||||   |||   ||||| ||||||  |||    ||
seq2  TAGCTCACT-CAT-TGAA--TCTGAATGGGGGGGGGGGACTCCT----TG  925

seq1  CTCACTGAAGTGGGG  954
      |||||||||| ||| 
seq2  CTCACTGAAGGGGG-  939

seq1: chr9_88852258_88853454
seq2: B6Ng01-284D22.g_67_1254

seq1  GAATTCATAATGAATAACACAGGAGAATGGATACGGCAGAATGGAGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGAATAACACAGGAGAATGGATACGGCAGAATGGAGGTTG  50

seq1  GGTATGTGTGATGACTATATATATTTTTTTTCTAGTGAAGAATAGGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGTGATGACTATATATATTTTTTTTCTAGTGAAGAATAGGAATG  100

seq1  AAGAGTTTCCTTACTAATTAAAACAAACAAGAAAGTAACAATCAAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTCCTTACTAATTAAAACAAACAAGAAAGTAACAATCAAAGGAC  150

seq1  TTCAGTCTGTTTGTATGCCTTATTTTTAGATACTCTGAGTTAAAATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTGTTTGTATGCCTTATTTTTAGATACTCTGAGTTAAAATTAAA  200

seq1  CAAAACAAAAATCCCCTGGGTCATTTCCAATGGCCTATACTTGAAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAAATCCCCTGGGTCATTTCCAATGGCCTATACTTGAAATGTT  250

seq1  TTTTAAGGCTTTTTAAAATAAGATTTATACATTTATTTTATGTATGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGCTTTTTAAAATAAGATTTATACATTTATTTTATGTATGTGAT  300

seq1  TATACTGTTTTTCTTAATCTTCTACATTTACTATTATTTTCTCCAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTTTTTCTTAATCTTCTACATTTACTATTATTTTCTCCAGTCTC  350

seq1  CTTTACCAGTTTGAAGTGCATGGTTGAAATCATAATGCCTGGTAGAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCAGTTTGAAGTGCATGGTTGAAATCATAATGCCTGGTAGAAGAT  400

seq1  TAATATGATTTTCCCCCTATCATCAGCATTTCAGAGGAAAAGATAGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGATTTTCCCCCTATCATCAGCATTTCAGAGGAAAAGATAGTTCC  450

seq1  TAAAGCTACTGGGATACATTTTAGTAGCTGGGTGTCTGTAGTCTCAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTACTGGGATACATTTTAGTAGCTGGGTGTCTGTAGTCTCAGCTA  500

seq1  CTCAAAGGCAAAGACTAGAGGAACACTGCTTGAGCACAGGGTAATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGCAAAGACTAGAGGAACACTGCTTGAGCACAGGGTAATTTCAA  550

seq1  GACCAAGTGTGGGCAAGACCTATCACAAAAACTAAGAATGCACCGAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTGTGGGCAAGACCTATCACAAAAACTAAGAATGCACCGAAGAT  600

seq1  GAAACTCAGTGTCTCACCCTTTGGAAACCATGCTTTAGTTTGATTCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAGTGTCTCACCCTTTGGAAACCATGCTTTAGTTTGATTCAAGT  650

seq1  GACTTTCCTACTTCCATACTCTTTAATGAAACACTTTTTCTGTGTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCTACTTCCATACTCTTTAATGAAACACTTTTTCTGTGTCTTTT  700

seq1  ATGGAATAAAGAAGAGTTCTTGTTCATTAGCTCCACAGGGGTGAGGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAAAGAAGAGTTCTTGTTCATTAGCTCCACAGGGGTGAGGGACT  750

seq1  ATACCTTTATACACAACGCTGTATCATTCATGCTCAGCATCGGCCCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTATACACAACGCTGTATCATTCATGCTCAGCATCGGCCCCATT  800

seq1  GTACAGAAAGTACCTTGCACATAGCTATTGCTTTCAGGAACTGACATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAAAGTACCTTGCACATAGCTATTGCTTTCAGGAACTGACATAGA  850

seq1  AATCTGAGGCTTGAACTCTGAATTTTCCTACTTATTAGAGGCATAACCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATCTGAGGCTTGAACTCTGAATTTTCCTACTTATTAGAGGCATAACCT-  899

seq1  AGGTAAATTACCTAGGAAGTACTCCAAGATTCAGACTTCCTATGTAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGTAAATTACCTAGGAAGTACTCCAAGATTCAGACTTCCTATGT-ATGT  948

seq1  GTATAACATAATATAGCATGATGTAATAATATAGTATAAACACAATAAAA  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTATAACATAATATAGCATGATGTAATAATATAGTATAAACACATTAAAA  998

seq1  TGAAGACAATAATACCTGTACTAAAAAACTAGAATACTTTCTCATCACAG  1050
      ||||||| |||||||||||||| |||||||||||||| ||||||||||||
seq2  TGAAGAC-ATAATACCTGTACTTAAAAACTAGAATAC-TTCTCATCACAG  1046

seq1  TAGTTTGTGACTATGT-AAATAGAATTGTGTAAGTATGGGGACCACATGG  1099
      |||||||||||||||| ||||||||||| |||||||||||   |||||||
seq2  TAGTTTGTGACTATGTAAAATAGAATTG-GTAAGTATGGG--ACACATGG  1093

seq1  GAAGTCCCAAGAAGTTGAAATATAATTTTTAAAACTACCCTAGGTACGAA  1149
       ||||  | |||||||| |||||||  ||| ||||||  ||||||||| |
seq2  CAAGTTTCCAGAAGTTG-AATATAA-GTTTGAAACTA--CTAGGTACG-A  1138

seq1  CAGAAATCCCTTTTAGAAG-TAGCATACACCAAATTGGTCCCTT--GGAA  1196
      ||||| |||| |||||||| ||||||||||| ||||||| ||||  ||||
seq2  CAGAAGTCCC-TTTAGAAGTTAGCATACACCTAATTGGTGCCTTTGGGAA  1187

seq1  G  1197
      |
seq2  G  1188