BAC Information

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BAC

Clone NameB6Ng01-285J09
Chromosome15 (Build37)
Map Location 40,434,896 - 40,612,259
singlet/doubletdoublet
Overlap geneZfpm2, Ppia-ps25
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013, LOC664872
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285J09.bB6Ng01-285J09.g
ACCGA083998GA083999
length1,136511
definitionB6Ng01-285J09.b B6Ng01-285J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,434,896 - 40,436,031)(40,611,744 - 40,612,259)
sequence
gaattccaaaccttcttttgctattttctgtttggagaatttctgttagc
cagtccttaagcttagctcttctaaaagcaaattattgtagtgttgtact
tcaccttcatttctaccagatattgaacccaaagttggtgattcttttct
ttctatactgaaaaatgtaataatactttctccttctggtcctcatgact
tgatagtaagacacactcttactatcataattctcactgggtaatttcat
gataacttttagccttgacttctaaaggtataatccagtgcatatagtta
ttcataaatttaattttttaaaaatcattttatggcgtgttttgcccctt
gcctttttggtttatgtttttcacaaaggattaccacttcatagtcctac
aaataccatttgaattccatgtcctgtcttgtctctctagaattccagca
acacaatgctaacttttttcttatattgccccaacccattaaaggctatt
attttcagaaattttaaataatttctgtttccactcaggcttgctctttc
ctcacttatttcaagacaatttgccttataagcacctcatagatagctgc
tttaaagtccctatcaaatgttttaatatctgaatcatattggtgttgaa
atttgctcttttgactttggcttcctgatagtcctagaggttggctctgc
agtcctctctagctccttgattaggatatatagcacacaacacagaaatt
gaggagactcgtgggcatattgttgcttagctctatggtctcttagaagc
ctacaatctttctagaactcaaggacttcctatgattctttcctcagtca
tattcggtcacactacatcttcatgcaaatgtagtctctgagttgtcatt
tcataaatatcatcactctgtctaataaaagaacaagttgtgcaagtaac
ttttaaagtatatactttgagagaagactgagtaaacatgcagacatgta
ttcaagtacagcattcaagctgaaaaattaagtagcacagggcaggcaac
aaatgttctcaagagtgaccagtctggaaaacaatagtttttctgtggcc
acctctcgtataaagagcgctgcacttaggggtgat

tttatcctttatcctttaatttgaatttctcaataaaacctgtgaaaaca
aattaggtgataggcaactctgaaataattcattagctaaatattcttaa
ctttcattcttatacagctatggtacaagttatgatagtaagtaaatgct
gtgttttatgtagttcttcagagtttgttgaagtgtctttataaaccatc
atgcaaacctatcattaaccttttattttaaatgtatgcatgtcctaatt
ctgtgagagtgcaaggtggcgtgagcagaaaagatcaagagaactttcac
atcctgttcctgtggcattgtgtgccagagtcaggctttcacccttaatc
tgatggatccacttaactacactacagaagattgatgtctgccccctctg
gtttaaaggaagactcaaaagtctgcaggaatttttgacatgttgtaaca
atatttttttctaagatcccctatacctctctctctctcctctcctctcc
tctcctctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40434896_40436031
seq2: B6Ng01-285J09.b_43_1178

seq1  GAATTCCAAACCTTCTTTTGCTATTTTCTGTTTGGAGAATTTCTGTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCTTCTTTTGCTATTTTCTGTTTGGAGAATTTCTGTTAGC  50

seq1  CAGTCCTTAAGCTTAGCTCTTCTAAAAGCAAATTATTGTAGTGTTGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTAAGCTTAGCTCTTCTAAAAGCAAATTATTGTAGTGTTGTACT  100

seq1  TCACCTTCATTTCTACCAGATATTGAACCCAAAGTTGGTGATTCTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCATTTCTACCAGATATTGAACCCAAAGTTGGTGATTCTTTTCT  150

seq1  TTCTATACTGAAAAATGTAATAATACTTTCTCCTTCTGGTCCTCATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACTGAAAAATGTAATAATACTTTCTCCTTCTGGTCCTCATGACT  200

seq1  TGATAGTAAGACACACTCTTACTATCATAATTCTCACTGGGTAATTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTAAGACACACTCTTACTATCATAATTCTCACTGGGTAATTTCAT  250

seq1  GATAACTTTTAGCCTTGACTTCTAAAGGTATAATCCAGTGCATATAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTTTAGCCTTGACTTCTAAAGGTATAATCCAGTGCATATAGTTA  300

seq1  TTCATAAATTTAATTTTTTAAAAATCATTTTATGGCGTGTTTTGCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATTTAATTTTTTAAAAATCATTTTATGGCGTGTTTTGCCCCTT  350

seq1  GCCTTTTTGGTTTATGTTTTTCACAAAGGATTACCACTTCATAGTCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTGGTTTATGTTTTTCACAAAGGATTACCACTTCATAGTCCTAC  400

seq1  AAATACCATTTGAATTCCATGTCCTGTCTTGTCTCTCTAGAATTCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATTTGAATTCCATGTCCTGTCTTGTCTCTCTAGAATTCCAGCA  450

seq1  ACACAATGCTAACTTTTTTCTTATATTGCCCCAACCCATTAAAGGCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGCTAACTTTTTTCTTATATTGCCCCAACCCATTAAAGGCTATT  500

seq1  ATTTTCAGAAATTTTAAATAATTTCTGTTTCCACTCAGGCTTGCTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGAAATTTTAAATAATTTCTGTTTCCACTCAGGCTTGCTCTTTC  550

seq1  CTCACTTATTTCAAGACAATTTGCCTTATAAGCACCTCATAGATAGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTATTTCAAGACAATTTGCCTTATAAGCACCTCATAGATAGCTGC  600

seq1  TTTAAAGTCCCTATCAAATGTTTTAATATCTGAATCATATTGGTGTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTCCCTATCAAATGTTTTAATATCTGAATCATATTGGTGTTGAA  650

seq1  ATTTGCTCTTTTGACTTTGGCTTCCTGATAGTCCTAGAGGTTGGCTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCTTTTGACTTTGGCTTCCTGATAGTCCTAGAGGTTGGCTCTGC  700

seq1  AGTCCTCTCTAGCTCCTTGATTAGGATATATAGCACACAACACAGAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTCTAGCTCCTTGATTAGGATATATAGCACACAACACAGAAATT  750

seq1  GAGGAGACTCGTGGGCATATTGTTGCTTAGCTCTATGGTCTCTTAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACTCGTGGGCATATTGTTGCTTAGCTCTATGGTCTCTTAGAAGC  800

seq1  CTACAATCTTTCTAGAACTCAAGGACTTCCTATGATTCTTTCCTCAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATCTTTCTAGAACTCAAGGACTTCCTATGATTCTTTCCTCAGTCA  850

seq1  TATTCGGTCACACTACATCTTCATGCAAATGTAGTCTCTGAGTTGTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGGTCACACTACATCTTCATGCAAATGTAGTCTCTGAGTTGTCATT  900

seq1  TCATAAATATCATCACTCTGTCTAATAAAAGAACAAGTTGTGCAAGTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATATCATCACTCTGTCTAATAAAAGAACAAGTTGTGCAAGTAAC  950

seq1  TTTTAAAGTATATACTTTGAGAAGAAGACTGAGTAAACATGCAGACATGT  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTAAAGTATATACTTTGAG-AGAAGACTGAGTAAACATGCAGACATGT  999

seq1  ATTCAAAGTACAGCATTCAAGCTGAAAAATTAAGTAGCACAGGGCAAGGC  1050
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTC-AAGTACAGCATTCAAGCTGAAAAATTAAGTAGCACAGGGC-AGGC  1047

seq1  AACAAATG-TCTCAAGAGTGACCAGTCTGGAAAACAATAATTTTTCTGTG  1099
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  AACAAATGTTCTCAAGAGTGACCAGTCTGGAAAACAATAGTTTTTCTGTG  1097

seq1  --CA-CTCAATATTAAAGAGCGCTGCACCTTTAGGGTGAT  1136
        || |||     |||||||||||||| |||  |||||||
seq2  GCCACCTCTCGTATAAAGAGCGCTGCA-CTTAGGGGTGAT  1136


seq1: chr15_40611744_40612259
seq2: B6Ng01-285J09.g_68_583 (reverse)

seq1  GGAGAGGAGAGGAGAGGAGAGGAGAGAGAGAGAGGTATAGGGGATCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGAGGAGAGGAGAGGAGAGAGAGAGAGGTATAGGGGATCTTAG  50

seq1  AAAAAAATATTGTTACAACATGTCAAAAATTCCTGCAGACTTTTGAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATTGTTACAACATGTCAAAAATTCCTGCAGACTTTTGAGTCT  100

seq1  TCCTTTAAACCAGAGGGGGCAGACATCAATCTTCTGTAGTGTAGTTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAACCAGAGGGGGCAGACATCAATCTTCTGTAGTGTAGTTAAGT  150

seq1  GGATCCATCAGATTAAGGGTGAAAGCCTGACTCTGGCACACAATGCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATCAGATTAAGGGTGAAAGCCTGACTCTGGCACACAATGCCACA  200

seq1  GGAACAGGATGTGAAAGTTCTCTTGATCTTTTCTGCTCACGCCACCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGATGTGAAAGTTCTCTTGATCTTTTCTGCTCACGCCACCTTGC  250

seq1  ACTCTCACAGAATTAGGACATGCATACATTTAAAATAAAAGGTTAATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACAGAATTAGGACATGCATACATTTAAAATAAAAGGTTAATGAT  300

seq1  AGGTTTGCATGATGGTTTATAAAGACACTTCAACAAACTCTGAAGAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGCATGATGGTTTATAAAGACACTTCAACAAACTCTGAAGAACTA  350

seq1  CATAAAACACAGCATTTACTTACTATCATAACTTGTACCATAGCTGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACACAGCATTTACTTACTATCATAACTTGTACCATAGCTGTATA  400

seq1  AGAATGAAAGTTAAGAATATTTAGCTAATGAATTATTTCAGAGTTGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAAGTTAAGAATATTTAGCTAATGAATTATTTCAGAGTTGCCTA  450

seq1  TCACCTAATTTGTTTTCACAGGTTTTATTGAGAAATTCAAATTAAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAATTTGTTTTCACAGGTTTTATTGAGAAATTCAAATTAAAGGAT  500

seq1  AAAGGATAAAGAATTC  516
      ||||||||||||||||
seq2  AAAGGATAAAGAATTC  516


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