BAC Information

Click to search

BAC

Clone NameB6Ng01-289E12
Chromosome15 (Build37)
Map Location 75,727,569 - 75,898,859
singlet/doubletdoublet
Overlap geneEef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib
Upstream geneLOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1
Downstream gene2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289E12.bB6Ng01-289E12.g
ACCGA086728GA086729
length9791,032
definitionB6Ng01-289E12.b B6Ng01-289E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,727,569 - 75,728,551)(75,897,836 - 75,898,859)
sequence
gaattcctgtacactgtgaccatctcagccaatcagaaagtataggacag
gggagccaaacagagagagcaacaggacaggacttacagtcccaggggtg
gcctggcccagggcctcaggggagttgggcagcatcaccttgagctagaa
acaggagggaaagcagttgagggctagaaggaaggagtgtgcaggtggtg
ccagcacctgtgacagctcctgaggtagccccagaaggctcaggaaggca
ggcacagggcaagctccccttgcaggaaacctaggtttctgctgcatgct
ctcagatgttagctccattcacaggtaggaaggttacatgcaagtcctac
ctagcccagcaggctctgctaagctgtcctctggggggcagtcaagcact
cttagtatctgccaggcagaatctgctccacagaagaggcaacagacaga
cagcaagcacaggcctttgccaaacacgagctacgtgggccttcacccta
gtgactcagtaaggcagcatttggggctgacagtaaacataaccctgttt
gttttggtttttcaagggtttctctgtgtaataataatagccctggctgt
cctggactccttgtagatcaggctggccttgaactcagagaactgcctgc
ctttgcctccccagtgctgggattaaaggagtgtgctaccatggccgcct
attttaacttggtgtgacaacagagccctatggtatgatttggaagagcg
ggaggtacctttagtttccctgcaagcaaggccacgaagttcaaaagact
agaatatgtgaatggaggctaggctggaaagcaagggctatttccaaaac
acctgggggctttcccactctacagcagacttaacaacacaaggacctgg
caagggacagaccagctgagcaagacaggaaatagctactgagcttgacc
cagcttttcttttggggggaagggggggg
gaattcattctggctgtcctagaactcagagatccacctgcctctgtggg
tactaaagatgtgcaccacccacaacccaccccagtgctctctggtgttt
ttattgttgttctctctttgttaagctcttgctgttcattgttggggttc
ctgaagagctccaaactcctttagaagaggtagtttggatagtaggtagg
atactgagagtgactgacccatagggcagagggcaggggctatccatttg
ggagctgctgatgtcttgcctggggcatgttatctgggtgacatctgggt
aatagtgagaggtgggctttccaccgagaaatgagagcgtaggtctgaca
gtatcttaggagagtccccctcagcagttgcagagtatcattgcagaaca
gcagtggtacatgtgacaaatgacacaagggagaccaggcatcaggtggg
caggggtgtgttttgcaggcttctttgtctggtttttcagcacactgggt
atcatggctagagccgcagaaccttgtgtgacctgggatacaaagaggtc
caggaccctgtggccatgatcctcctggtttggaaactctcccataccca
tagggctttggctatagagcctgttcccctgatcacatcttctgcccaca
gcccttcttccgactgttgaacttgagaaagttgggcctcagtgacaacg
agatccagcggctgcctcctgaagtggccaacttcatgcagctggtggag
ctagatgtgtcccggaacggtaggggggggagggcgggtggcactccgtg
aacataggggggagcataggggctccttggagctctgaggcgtgccatcc
tcacgggaccctctctaaacacagatattccttgagataccttgagagca
taaagtttctgtaaggctctggaagatgcagatctcagtgggaacccccc
tgtcctaggtagtgtaagcctaaagtgcggggttggcttcttggtccacg
gtagggtctagagctcttccaaggcgtatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75727569_75728551
seq2: B6Ng01-289E12.b_44_1022

seq1  GAATTCCTGTACACTGTGACCATCTCAGCCAATCAGAAAGTATAGGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTACACTGTGACCATCTCAGCCAATCAGAAAGTATAGGACAG  50

seq1  GGGAGCCAAACAGAGAGAGCAACAGGACAGGACTTACAGTCCCAGGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAAACAGAGAGAGCAACAGGACAGGACTTACAGTCCCAGGGGTG  100

seq1  GCCTGGCCCAGGGCCTCAGGGGAGTTGGGCAGCATCACCTTGAGCTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCCAGGGCCTCAGGGGAGTTGGGCAGCATCACCTTGAGCTAGAA  150

seq1  ACAGGAGGGAAAGCAGTTGAGGGCTAGAAGGAAGGAGTGTGCAGGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGGAAAGCAGTTGAGGGCTAGAAGGAAGGAGTGTGCAGGTGGTG  200

seq1  CCAGCACCTGTGACAGCTCCTGAGGTAGCCCCAGAAGGCTCAGGAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCTGTGACAGCTCCTGAGGTAGCCCCAGAAGGCTCAGGAAGGCA  250

seq1  GGCACAGGGCAAGCTCCCCTTGCAGGAAACCTAGGTTTCTGCTGCATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGGCAAGCTCCCCTTGCAGGAAACCTAGGTTTCTGCTGCATGCT  300

seq1  CTCAGATGTTAGCTCCATTCACAGGTAGGAAGGTTACATGCAAGTCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGTTAGCTCCATTCACAGGTAGGAAGGTTACATGCAAGTCCTAC  350

seq1  CTAGCCCAGCAGGCTCTGCTAAGCTGTCCTCTGGGGGGCAGTCAAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCAGCAGGCTCTGCTAAGCTGTCCTCTGGGGGGCAGTCAAGCACT  400

seq1  CTTAGTATCTGCCAGGCAGAATCTGCTCCACAGAAGAGGCAACAGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATCTGCCAGGCAGAATCTGCTCCACAGAAGAGGCAACAGACAGA  450

seq1  CAGCAAGCACAGGCCTTTGCCAAACACGAGCTACGTGGGCCTTCACCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCACAGGCCTTTGCCAAACACGAGCTACGTGGGCCTTCACCCTA  500

seq1  GTGACTCAGTAAGGCAGCATTTGGGGCTGACAGTAAACATAACCCTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCAGTAAGGCAGCATTTGGGGCTGACAGTAAACATAACCCTGTTT  550

seq1  GTTTTGGTTTTTCAAGGGTTTCTCTGTGTAATAATAATAGCCCTGGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTTTCAAGGGTTTCTCTGTGTAATAATAATAGCCCTGGCTGT  600

seq1  CCTGGACTCCTTGTAGATCAGGCTGGCCTTGAACTCAGAGAACTGCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACTCCTTGTAGATCAGGCTGGCCTTGAACTCAGAGAACTGCCTGC  650

seq1  CTTTGCCTCCCCAGTGCTGGGATTAAAGGAGTGTGCTACCATGGCCGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTCCCCAGTGCTGGGATTAAAGGAGTGTGCTACCATGGCCGCCT  700

seq1  ATTTTAACTTGGTGTGACAACAGAGCCCTATGGTATGATTTGGAAGAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACTTGGTGTGACAACAGAGCCCTATGGTATGATTTGGAAGAGCG  750

seq1  GGAGGTACCTTTAGTTTCCCTGCAAGCAAGGCCACGAAGTTCAAAAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTACCTTTAGTTTCCCTGCAAGCAAGGCCACGAAGTTCAAAAGACT  800

seq1  AGAATATGTGAATGGAGGCTAGGCTGGAAAGCAAGGGCTATTTCCAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGTGAATGGAGGCTAGGCTGGAAAGCAAGGGCTATTTCCAAAAC  850

seq1  ACCTGGGGGCTTTCCCACTCTACAGCAGGACTTAAACAACACAAAGGACC  900
      ||||||||||||||||||||||||||| ||||| |||||||| |||||||
seq2  ACCTGGGGGCTTTCCCACTCTACAGCA-GACTT-AACAACAC-AAGGACC  897

seq1  TGGCAAGGGACAGACCAGCTGAGGCAAGACAGGAAATAGCTACTGAGCTT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGGCAAGGGACAGACCAGCTGA-GCAAGACAGGAAATAGCTACTGAGCTT  946

seq1  GACCCAGCTTTTCTTTTGGGGGGAGGGGGGGGG  983
      |||||||||||||||||||||||| ||||||||
seq2  GACCCAGCTTTTCTTTTGGGGGGAAGGGGGGGG  979

seq1: chr15_75897836_75898859
seq2: B6Ng01-289E12.g_67_1098 (reverse)

seq1  CAGATACG-CATGGAAGAGCTCTAGACCCTGCCGTGG-CCAAG-AGCCAA  47
      |||||||| | ||||||||||||||||||| |||||| ||||| ||||||
seq2  CAGATACGCCTTGGAAGAGCTCTAGACCCTACCGTGGACCAAGAAGCCAA  50

seq1  -CCCGCACTGTGGGCTAACACTTACCTA-GACA-GGGGGTTCCCACTGAA  94
       |||||||| | |||| |||| |||||| |||| ||||||||||||||| 
seq2  CCCCGCACTTTAGGCTTACAC-TACCTAGGACAGGGGGGTTCCCACTGAG  99

seq1  GTCTGCAATCTCCAGAGCCTTACAG-AACTTTATGCTCTC-AGGTATCTC  142
       ||||||   ||||||||||||||| |||||||||||||| |||||||||
seq2  ATCTGCATCTTCCAGAGCCTTACAGAAACTTTATGCTCTCAAGGTATCTC  149

seq1  -AGGAATATCTGTGTTTGGAGAGGGTGCCGTGAGGATGGCACGCCTCAGG  191
       |||||||||||||||| |||||||| ||||||||||||||||||||| |
seq2  AAGGAATATCTGTGTTTAGAGAGGGTCCCGTGAGGATGGCACGCCTCA-G  198

seq1  AGCTCCCAGGAGCCCCTATGCTCCCCCCTATGTTCACGGAGTGCCACCCG  241
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAGGAGCCCCTATGCTCCCCCCTATGTTCACGGAGTGCCACCCG  248

seq1  CCCT-CCCCCCCTACCGTTCCGGGACACATCTAGCTCCACCAGCTGCATG  290
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCCCCTACCGTTCCGGGACACATCTAGCTCCACCAGCTGCATG  298

seq1  AAGTTGGCCACTTCAGGAGGCAGCCGCTGGATCTCGTTGTCACTGAGGCC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGCCACTTCAGGAGGCAGCCGCTGGATCTCGTTGTCACTGAGGCC  348

seq1  CAACTTTCTCAAGTTCAACAGTCGGAAGAAGGGCTGTGGGCAGAAGATGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCTCAAGTTCAACAGTCGGAAGAAGGGCTGTGGGCAGAAGATGT  398

seq1  GATCAGGGGAACAGGCTCTATAGCCAAAGCCCTATGGGTATGGGAGAGTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGGGAACAGGCTCTATAGCCAAAGCCCTATGGGTATGGGAGAGTT  448

seq1  TCCAAACCAGGAGGATCATGGCCACAGGGTCCTGGACCTCTTTGTATCCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCAGGAGGATCATGGCCACAGGGTCCTGGACCTCTTTGTATCCC  498

seq1  AGGTCACACAAGGTTCTGCGGCTCTAGCCATGATACCCAGTGTGCTGAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACACAAGGTTCTGCGGCTCTAGCCATGATACCCAGTGTGCTGAAA  548

seq1  AACCAGACAAAGAAGCCTGCAAAACACACCCCTGCCCACCTGATGCCTGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACAAAGAAGCCTGCAAAACACACCCCTGCCCACCTGATGCCTGG  598

seq1  TCTCCCTTGTGTCATTTGTCACATGTACCACTGCTGTTCTGCAATGATAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTGTGTCATTTGTCACATGTACCACTGCTGTTCTGCAATGATAC  648

seq1  TCTGCAACTGCTGAGGGGGACTCTCCTAAGATACTGTCAGACCTACGCTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAACTGCTGAGGGGGACTCTCCTAAGATACTGTCAGACCTACGCTC  698

seq1  TCATTTCTCGGTGGAAAGCCCACCTCTCACTATTACCCAGATGTCACCCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCGGTGGAAAGCCCACCTCTCACTATTACCCAGATGTCACCCA  748

seq1  GATAACATGCCCCAGGCAAGACATCAGCAGCTCCCAAATGGATAGCCCCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACATGCCCCAGGCAAGACATCAGCAGCTCCCAAATGGATAGCCCCT  798

seq1  GCCCTCTGCCCTATGGGTCAGTCACTCTCAGTATCCTACCTACTATCCAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGCCCTATGGGTCAGTCACTCTCAGTATCCTACCTACTATCCAA  848

seq1  ACTACCTCTTCTAAAGGAGTTTGGAGCTCTTCAGGAACCCCAACAATGAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTCTTCTAAAGGAGTTTGGAGCTCTTCAGGAACCCCAACAATGAA  898

seq1  CAGCAAGAGCTTAACAAAGAGAGAACAACAATAAAAACACCAGAGAGCAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGAGCTTAACAAAGAGAGAACAACAATAAAAACACCAGAGAGCAC  948

seq1  TGGGGTGGGTTGTGGGTGGTGCACATCTTTAGTACCCACAGAGGCAGGTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGGTTGTGGGTGGTGCACATCTTTAGTACCCACAGAGGCAGGTG  998

seq1  GATCTCTGAGTTCTAGGACAGCCAGAATGAATTC  1024
      ||||||||||||||||||||||||||||||||||
seq2  GATCTCTGAGTTCTAGGACAGCCAGAATGAATTC  1032