BAC Information

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BAC

Clone NameB6Ng01-291J10
Chromosome15 (Build37)
Map Location 43,725,971 - 43,891,873
singlet/doubletdoublet
Overlap geneLOC100039309
Upstream geneRspo2, LOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74
Downstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291J10.bB6Ng01-291J10.g
ACCGA088435GA088436
length1,1371,044
definitionB6Ng01-291J10.b B6Ng01-291J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,890,732 - 43,891,873)(43,725,971 - 43,727,023)
sequence
gaattcacatactttctcctgggcttttgctggctctttttagtaatgtc
tcatagagtgaacctcttgcacagtgtggagttgcatcacatttgatgac
tgtctcatagggaagtatttcaaactccttgggttcaattgctcctgatt
ttgactttatataactttggacaaattttttacccccttgttctttgatc
tcttccactctaaaataagaataataagtctagtttctgacagttattta
gagtaaattaatgcctaaaacaatggagcatgagacccagcacagaccac
gatgagtgttgtttcctggatggtagcaggaatgtttcctgaagtttaat
gtttgttatttctatctgcttcagaaccaatgatcttatggcaaggaaga
agacaaagaatagatgactgattatatttaataaaacatcatttaatcta
tccacgtgatcgtatgtatgtgatacagttttgctaacttctttgatata
cagatttgttttccactatgttttagtgattctgataatgtccagtgaaa
tgtgtttctgttccatggtaaaatgttaatgatatcctcggggaaataaa
ttcaatgtcagcaaatcaattaaaggcatggctttccttattgttctttt
cattctgaaaaaaagttaattgtctttctaattttgtaataccagcaggt
aagaaaatgcatgggggtcttcactaaatagcttatcttattatccaatc
gctttgcgtgagtgtcagtaaaaagattgttaattagtttcaactctctg
aactctttggtataggagaggaagtgggcctcaatctcatcccagagaca
aaggccaagtacacccaaagaagaagaaattataaaaaacatctgtattt
tgtcctccccagcccttacattcactacgacatttcagaatgatacttat
tttatgtgatattaaggagtctttgtataatctgttttagacattccagc
catatgacacatttagtattcaattatcactatttatttaatagcatcat
taagcagcaagcacttctaaagaatgtaaagaaccacataagagaaaaag
tgctatgcatttttttgttccttgagactatattttg

gaattcacttttttataactgtattttacactcgataagaaacctccata
ttcttgtatctccaacttccagtacccaagtcctactcctaactgagatc
tatttttctagattttataggaatctgaaatcatggatatttatccttta
gctcctgtaatttttttttaatacaatgcccctcagatttagccctgttt
tttttttaatgccagatatatttccattggcttgtaatagaattccattg
tgtagacatattttccattttcctttcatttattattgaacacctggcct
tttgtttgcttttgttttaattttaagtgtttttccttatgtatcatttg
aaaagcttaagctttgcatgtacatattataaaatcctcaatgatatctg
tggcaacacccttgatttcaaataccttaatatcttatccagtaaaaatg
aatgccttaattctcatgttagttgtcataaacaatgttaacagctttac
aggagtctagatttggttttgctactcaaattggtataaatactgctttt
ggtttttaagaatctgtgcttaaagactgatgaccaaggcatgtccctag
atagaccttgctttcaacttcccactaagcctttttggccttaaatgggc
taatttgtacagatggtcaaatactgggtcattcactagtgtgtcaatga
gtaggcttgtctttcttctagatgatcttctatgacacagctgattggcc
ttgggttttatacagagtaccagcagaggtctaaaacagtgatccaaatc
tgtttgaagggtgggttcagaaactggcacatagccatccaataccttat
tttgtcaaatgaaacccaaggaatataagtgaaggaggaatgactcctga
caaatagaccagtttttgatgggatggattacgtacaaatcatatttttc
tcttttttttttttgtctttatggatatttctttatttatatttcaatgt
tatcccttttcaggtctcccctctgaaaccctctatccatgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43890732_43891873
seq2: B6Ng01-291J10.b_45_1181 (reverse)

seq1  CAAAATATATGTTCTTCAAGGA--CAAAAATTCCATTGCACTTTTTCCTC  48
      ||||||||| ||   |||||||   ||||| | ||| ||||||||| |||
seq2  CAAAATATA-GT--CTCAAGGAACAAAAAAATGCATAGCACTTTTT-CTC  46

seq1  TTTATGT-GTTCTTTACAATTCTTTAGAAGTTGCTTGCTGCTTAATGAAT  97
       |||||| ||||||||| |||||||||||| |||||||||||||||| ||
seq2  -TTATGTGGTTCTTTAC-ATTCTTTAGAAG-TGCTTGCTGCTTAATG-AT  92

seq1  GCTTATTAAATAAATAAGTGAATAATTGAATACTAAATGTGTCATATGGC  147
      || |||||||||||| |||| |||||||||||||||||||||||||||||
seq2  GC-TATTAAATAAAT-AGTG-ATAATTGAATACTAAATGTGTCATATGGC  139

seq1  TGGAATGTCTAAAACAGATTATAC-AAGACTCCCTTAATATCACATAAA-  195
      |||||||||||||||||||||||| |||||| ||||||||||||||||| 
seq2  TGGAATGTCTAAAACAGATTATACAAAGACT-CCTTAATATCACATAAAA  188

seq1  -TAGTATCATTCTGAAATGTCGTAGTGAATGTAA-GGCTGGGGAGGACAA  243
        |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAGTATCATTCTGAAATGTCGTAGTGAATGTAAGGGCTGGGGAGGACAA  238

seq1  AATACAGATGTTTTTTATAATTTCTTCTTCTTTGGGTGTACTTGGCCTTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGATGTTTTTTATAATTTCTTCTTCTTTGGGTGTACTTGGCCTTT  288

seq1  GTCTCTGGGATGAGATTGAGGCCCACTTCCTCTCCTATACCAAAGAGTTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGGATGAGATTGAGGCCCACTTCCTCTCCTATACCAAAGAGTTC  338

seq1  AGAGAGTTGAAACTAATTAACAATCTTTTTACTGACACTCACGCAAAGCG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTGAAACTAATTAACAATCTTTTTACTGACACTCACGCAAAGCG  388

seq1  ATTGGATAATAAGATAAGCTATTTAGTGAAGACCCCCATGCATTTTCTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATAATAAGATAAGCTATTTAGTGAAGACCCCCATGCATTTTCTTA  438

seq1  CCTGCTGGTATTACAAAATTAGAAAGACAATTAACTTTTTTTCAGAATGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGTATTACAAAATTAGAAAGACAATTAACTTTTTTTCAGAATGA  488

seq1  AAAGAACAATAAGGAAAGCCATGCCTTTAATTGATTTGCTGACATTGAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAATAAGGAAAGCCATGCCTTTAATTGATTTGCTGACATTGAAT  538

seq1  TTATTTCCCCGAGGATATCATTAACATTTTACCATGGAACAGAAACACAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCCCGAGGATATCATTAACATTTTACCATGGAACAGAAACACAT  588

seq1  TTCACTGGACATTATCAGAATCACTAAAACATAGTGGAAAACAAATCTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGACATTATCAGAATCACTAAAACATAGTGGAAAACAAATCTGT  638

seq1  ATATCAAAGAAGTTAGCAAAACTGTATCACATACATACGATCACGTGGAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAGAAGTTAGCAAAACTGTATCACATACATACGATCACGTGGAT  688

seq1  AGATTAAATGATGTTTTATTAAATATAATCAGTCATCTATTCTTTGTCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAATGATGTTTTATTAAATATAATCAGTCATCTATTCTTTGTCTT  738

seq1  CTTCCTTGCCATAAGATCATTGGTTCTGAAGCAGATAGAAATAACAAACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGCCATAAGATCATTGGTTCTGAAGCAGATAGAAATAACAAACA  788

seq1  TTAAACTTCAGGAAACATTCCTGCTACCATCCAGGAAACAACACTCATCG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTCAGGAAACATTCCTGCTACCATCCAGGAAACAACACTCATCG  838

seq1  TGGTCTGTGCTGGGTCTCATGCTCCATTGTTTTAGGCATTAATTTACTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTGCTGGGTCTCATGCTCCATTGTTTTAGGCATTAATTTACTCT  888

seq1  AAATAACTGTCAGAAACTAGACTTATTATTCTTATTTTAGAGTGGAAGAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGTCAGAAACTAGACTTATTATTCTTATTTTAGAGTGGAAGAG  938

seq1  ATCAAAGAACAAGGGGGTAAAAAATTTGTCCAAAGTTATATAAAGTCAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAACAAGGGGGTAAAAAATTTGTCCAAAGTTATATAAAGTCAAA  988

seq1  ATCAGGAGCAATTGAACCCAAGGAGTTTGAAATACTTCCCTATGAGACAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGCAATTGAACCCAAGGAGTTTGAAATACTTCCCTATGAGACAG  1038

seq1  TCATCAAATGTGATGCAACTCCACACTGTGCAAGAGGTTCACTCTATGAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAATGTGATGCAACTCCACACTGTGCAAGAGGTTCACTCTATGAG  1088

seq1  ACATTACTAAAAAGAGCCAGCAAAAGCCCAGGAGAAAGTATGTGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTAAAAAGAGCCAGCAAAAGCCCAGGAGAAAGTATGTGAATTC  1137


seq1: chr15_43725971_43727023
seq2: B6Ng01-291J10.g_70_1113

seq1  GAATTCACTTTTTTATAACTGTATTTTACACTCGATAAGAAACCTCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTTTATAACTGTATTTTACACTCGATAAGAAACCTCCATA  50

seq1  TTCTTGTATCTCCAACTTCCAGTACCCAAGTCCTACTCCTAACTGAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTATCTCCAACTTCCAGTACCCAAGTCCTACTCCTAACTGAGATC  100

seq1  TATTTTTCTAGATTTTATAGGAATCTGAAATCATGGATATTTATCCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTAGATTTTATAGGAATCTGAAATCATGGATATTTATCCTTTA  150

seq1  GCTCCTGTAATTTTTTTTTAATACAATGCCCCTCAGATTTAGCCCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTAATTTTTTTTTAATACAATGCCCCTCAGATTTAGCCCTGTTT  200

seq1  TTTTTTTAATGCCAGATATATTTCCATTGGCTTGTAATAGAATTCCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATGCCAGATATATTTCCATTGGCTTGTAATAGAATTCCATTG  250

seq1  TGTAGACATATTTTCCATTTTCCTTTCATTTATTATTGAACACCTGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACATATTTTCCATTTTCCTTTCATTTATTATTGAACACCTGGCCT  300

seq1  TTTGTTTGCTTTTGTTTTAATTTTAAGTGTTTTTCCTTATGTATCATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGCTTTTGTTTTAATTTTAAGTGTTTTTCCTTATGTATCATTTG  350

seq1  AAAAGCTTAAGCTTTGCATGTACATATTATAAAATCCTCAATGATATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTAAGCTTTGCATGTACATATTATAAAATCCTCAATGATATCTG  400

seq1  TGGCAACACCCTTGATTTCAAATACCTTAATATCTTATCCAGTAAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACACCCTTGATTTCAAATACCTTAATATCTTATCCAGTAAAAATG  450

seq1  AATGCCTTAATTCTCATGTTAGTTGTCATAAACAATGTTAACAGCTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTAATTCTCATGTTAGTTGTCATAAACAATGTTAACAGCTTTAC  500

seq1  AGGAGTCTAGATTTGGTTTTGCTACTCAAATTGGTATAAATACTGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTAGATTTGGTTTTGCTACTCAAATTGGTATAAATACTGCTTTT  550

seq1  GGTTTTTAAGAATCTGTGCTTAAAGACTGATGACCAAGGCATGTCCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAAGAATCTGTGCTTAAAGACTGATGACCAAGGCATGTCCCTAG  600

seq1  ATAGACCTTGCTTTCAACTTCCCACTAAGCCTTTTTGGCCTTAAATGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCTTGCTTTCAACTTCCCACTAAGCCTTTTTGGCCTTAAATGGGC  650

seq1  TAATTTGTACAGATGGTCAAATACTGGGTCATTCACTAGTGTGTCAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTACAGATGGTCAAATACTGGGTCATTCACTAGTGTGTCAATGA  700

seq1  GTAGGCTTGTCTTTCTTCTAGATGATCTTCTATGACACAGCTGATTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTTGTCTTTCTTCTAGATGATCTTCTATGACACAGCTGATTGGCC  750

seq1  TTGGGTTTTATACAGAGTACCAGCAGAGGTCTAAAACAGTGATCCAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGGGTTTTATACAGAGTACCAGCAGAGGTCTAAAACAGTGATCC-AAAT  799

seq1  CTG-TTGAAGGGTGGGTTCAG-AACTGGCACATAGCCATCCAATACCTTA  848
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGTTTGAAGGGTGGGTTCAGAAACTGGCACATAGCCATCCAATACCTTA  849

seq1  TTTTGTCAAATGAAACCCAAGGAATATAAGTGAAGGAGGAATGACTCCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAAATGAAACCCAAGGAATATAAGTGAAGGAGGAATGACTCCTG  899

seq1  ACAAATAGACCAGTTTTTGATGGGATGGATTACGTACAAAATCATATTTT  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAAATAGACCAGTTTTTGATGGGATGGATTACGTAC-AAATCATATTTT  948

seq1  TTCCTCTTTTTTTTTTTTGTCTTTTATTGGATATTTTCTTTATTTATATT  998
      |  |||||||||||||||||||||   |||||| ||||||||||||||||
seq2  T--CTCTTTTTTTTTTTTGTCTTT--ATGGATA-TTTCTTTATTTATATT  993

seq1  TCAAATGTTATCCCTTTTCCAGGTCTCCCCTCTGGAAACCCTCTATCCCA  1048
      || ||||||||||||||| |||||||||||||| |||||||||||| |||
seq2  TC-AATGTTATCCCTTTT-CAGGTCTCCCCTCT-GAAACCCTCTAT-CCA  1039

seq1  TGCCC  1053
      |||||
seq2  TGCCC  1044


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