BAC Information

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BAC

Clone NameB6Ng01-292M06
Chromosome15 (Build37)
Map Location 40,321,182 - 40,449,869
singlet/doubletdoublet
Overlap geneLOC664872
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
Downstream geneZfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292M06.bB6Ng01-292M06.g
ACCGA089318GA089319
length1,116918
definitionB6Ng01-292M06.b B6Ng01-292M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,321,182 - 40,322,289)(40,449,286 - 40,449,869)
sequence
gaattcatcatttctaatagctgagtagtactccattatgtaaatgtatc
acattttctgtattcattccactgttgagggacatctgggttctttccag
cttctgactattataaataaggctgctataaacatagtggagcatgtgtc
cttattacacgttggagcatcttctggatatatgcccaggagtgatatag
ctgggtcctcagatagtactatgttcaattttttgaggaactgccaaact
gatttccagagtggttgtaccagcttacaatcccataagcaatggaggag
agagtgttcttgtttctccgcatcctcaccagcatcatagtacatatgat
ccagtcagttgagaatatccagtgtgttaacctttgagtagaagattaaa
agatccaatgataaagaggtgcagagtggccttgtagctactaaaacata
aggcgattagacagaggcaatacaatccagtttgtagtttgcagtgtatt
ctaccagcacaagcacaggctatagatgtattttacctgaagagactatg
aaagatctctcagcatatgtgtgattctgctgagcatcaaagactagtga
tgagcagtggaaaaagaagatggggagaggctgtggactaaatgtgaaga
gtgttgagctttcctgaggagtagggagttcagctaagggtgcagagtgt
gagaggagggtgggagggactggcagcctgggtctgcagggttcctgcca
cggctgtgctgtgctggtgccattcagaaaactgtaggtgtatgcttaat
agcaatggcttaaagtgggccgtggggctgtgaaaggcagccagtgtgct
cagaagtctcatcccttaccctctcagtgctgagatttcaagctctgtaa
ctcctcagaagttctggggttaaactagtgttcttcaccacaggaggacc
tatagggtcttactaaacctgtgggggatccacagagacaaccacccacc
aaaggagcttagaagggggggtggccctagatgcatttgtagcagatttg
cagcttgggtcttcatggtgagtccttaactaccagaaagggagggggtt
gatatctctaactctg

gaattcttggtatggctatgctcaccaagtagtaacagaagacattcttc
atgttgaaaacaagttttagttatgcacgtgcatgtacacacacacacac
agacatacacagacacacacacacacacgagcacccaccaagtcagctgc
acagatatagacagaacaaaatatgtctaatctccataataacttttctt
aataggattaaaaatgaattttgtaatataaggtggacatataattgtac
tattgctcttatttcgaaatataatgtatattatagccacagtacaaaca
aacaaaatgagaataaaattgtattaaaatgaacaaattattaggcaata
actcaagtccaagaacaaatcaggagaataagaaatagcaaataaaaaga
caaatattacaaactatgaacttcagctttataaaaagacataaaatata
aaacaataatatcatgctttttgatgtatagcatatttagacacagtaat
ataacaatagtagctcaaaatgggttgaagacttaattatatgtaaatat
cttcctatatctcactagaaataaggcagtatatatctaaattaggcgtg
taacaaagtaaattttcactcataatcatgaacaaaacataagaaaataa
cttaaatttactttaaaatagtgaagtagtgagtgtggtatgcccattct
taaatgtcacatctacaacacaacccccatatctaaaactctgggagaat
caccattggagtgagtggcaagtgtgtagggatgcctgctgagcataagg
gtcttctagagagggcagaaaagctacatgtataaattttctccagtatg
gtttcctaaacaagatcgacataatgacaacaccagctaacatactaaac
tatgggtgggagaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40321182_40322289
seq2: B6Ng01-292M06.b_42_1157

seq1  GAATTCATCATTTCTAATAGCTGAGTAGTACTCCATTATGTAAATGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTTCTAATAGCTGAGTAGTACTCCATTATGTAAATGTATC  50

seq1  ACATTTTCTGTATTCATTCCACTGTTGAGGGACATCTGGGTTCTTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGTATTCATTCCACTGTTGAGGGACATCTGGGTTCTTTCCAG  100

seq1  CTTCTGACTATTATAAATAAGGCTGCTATAAACATAGTGGAGCATGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACTATTATAAATAAGGCTGCTATAAACATAGTGGAGCATGTGTC  150

seq1  CTTATTACACGTTGGAGCATCTTCTGGATATATGCCCAGGAGTGATATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACACGTTGGAGCATCTTCTGGATATATGCCCAGGAGTGATATAG  200

seq1  CTGGGTCCTCAGATAGTACTATGTTCAATTTTTTGAGGAACTGCCAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTCAGATAGTACTATGTTCAATTTTTTGAGGAACTGCCAAACT  250

seq1  GATTTCCAGAGTGGTTGTACCAGCTTACAATCCCATAAGCAATGGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGAGTGGTTGTACCAGCTTACAATCCCATAAGCAATGGAGGAG  300

seq1  AGAGTGTTCTTGTTTCTCCGCATCCTCACCAGCATCATAGTACATATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTCTTGTTTCTCCGCATCCTCACCAGCATCATAGTACATATGAT  350

seq1  CCAGTCAGTTGAGAATATCCAGTGTGTTAACCTTTGAGTAGAAGATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGTTGAGAATATCCAGTGTGTTAACCTTTGAGTAGAAGATTAAA  400

seq1  AGATCCAATGATAAAGAGGTGCAGAGTGGCCTTGTAGCTACTAAAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAATGATAAAGAGGTGCAGAGTGGCCTTGTAGCTACTAAAACATA  450

seq1  AGGCGATTAGACAGAGGCAATACAATCCAGTTTGTAGTTTGCAGTGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGATTAGACAGAGGCAATACAATCCAGTTTGTAGTTTGCAGTGTATT  500

seq1  CTACCAGCACAAGCACAGGCTATAGATGTATTTTACCTGAAGAGACTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGCACAAGCACAGGCTATAGATGTATTTTACCTGAAGAGACTATG  550

seq1  AAAGATCTCTCAGCATATGTGTGATTCTGCTGAGCATCAAAGACTAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTCTCAGCATATGTGTGATTCTGCTGAGCATCAAAGACTAGTGA  600

seq1  TGAGCAGTGGAAAAAGAAGATGGGGAGAGGCTGTGGACTAAATGTGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTGGAAAAAGAAGATGGGGAGAGGCTGTGGACTAAATGTGAAGA  650

seq1  GTGTTGAGCTTTCCTGAGGAGTAGGGAGTTCAGCTAAGGGTGCAGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGCTTTCCTGAGGAGTAGGGAGTTCAGCTAAGGGTGCAGAGTGT  700

seq1  GAGAGGAGGGTGGGAGGGACTGGCAGCCTGGGTCTGCAGGGTTCCTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGGTGGGAGGGACTGGCAGCCTGGGTCTGCAGGGTTCCTGCCA  750

seq1  CGGCTGTGCTGTGCTGGTGCCATTCAGAAAACTGTAGGTGTATGCTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGTGCTGTGCTGGTGCCATTCAGAAAACTGTAGGTGTATGCTTAAT  800

seq1  AGCAATGGCTTAAAGTGGGCCGTGGGGCTGTGAAAGGCAGCCAGTGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGCTTAAAGTGGGCCGTGGGGCTGTGAAAGGCAGCCAGTGTGCT  850

seq1  CAGAAGTCTCATCCCTTACCCTCTCAGTGCTGAGATTTCAAGCTCTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCTCATCCCTTACCCTCTCAGTGCTGAGATTTCAAGCTCTGTAA  900

seq1  CTCCTCAGAAGTTCTGGGGTTAAAACTAGTG-TCTTCACCACAAGAGGAC  949
      ||||||||||||||||||||| ||||||||| ||||||||||| ||||||
seq2  CTCCTCAGAAGTTCTGGGGTT-AAACTAGTGTTCTTCACCACAGGAGGAC  949

seq1  CTATAGGGTC-TACTAAACCTGTGGGGGAT-CACAGAGACAACCACCAAC  997
      |||||||||| ||||||||||||||||||| |||||||||||||||| ||
seq2  CTATAGGGTCTTACTAAACCTGTGGGGGATCCACAGAGACAACCACCCAC  999

seq1  C-AAGGAGCCTAGA---GGGGGTGGCCCTAGATGCATTTGTAGCAGATTT  1043
      | ||||||| ||||   |||||||||||||||||||||||||||||||||
seq2  CAAAGGAGCTTAGAAGGGGGGGTGGCCCTAGATGCATTTGTAGCAGATTT  1049

seq1  GCAGCTT-GGTCTTCAT-GTGGGTCCCTTAACTACCAGAGAGGGAGGGGG  1091
      ||||||| ||||||||| ||| || |||||||||||||| ||||||||||
seq2  GCAGCTTGGGTCTTCATGGTGAGT-CCTTAACTACCAGAAAGGGAGGGGG  1098

seq1  -TGATATCTCTAACTCTG  1108
       |||||||||||||||||
seq2  TTGATATCTCTAACTCTG  1116


seq1: chr15_40449286_40449869
seq2: B6Ng01-292M06.g_62_645 (reverse)

seq1  ATATACTGCCTTATTTCTAGTGAGATATAGGAAGATATTTACATATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGCCTTATTTCTAGTGAGATATAGGAAGATATTTACATATAATT  50

seq1  AAGTCTTCAACCCATTTTGAGCTACTATTGTTATATTACTGTGTCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCAACCCATTTTGAGCTACTATTGTTATATTACTGTGTCTAAAT  100

seq1  ATGCTATACATCAAAAAGCATGATATTATTGTTTTATATTTTATGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATACATCAAAAAGCATGATATTATTGTTTTATATTTTATGTCTTT  150

seq1  TTATAAAGCTGAAGTTCATAGTTTGTAATATTTGTCTTTTTATTTGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGCTGAAGTTCATAGTTTGTAATATTTGTCTTTTTATTTGCTAT  200

seq1  TTCTTATTCTCCTGATTTGTTCTTGGACTTGAGTTATTGCCTAATAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTCTCCTGATTTGTTCTTGGACTTGAGTTATTGCCTAATAATTT  250

seq1  GTTCATTTTAATACAATTTTATTCTCATTTTGTTTGTTTGTACTGTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTAATACAATTTTATTCTCATTTTGTTTGTTTGTACTGTGGCT  300

seq1  ATAATATACATTATATTTCGAAATAAGAGCAATAGTACAATTATATGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATACATTATATTTCGAAATAAGAGCAATAGTACAATTATATGTCC  350

seq1  ACCTTATATTACAAAATTCATTTTTAATCCTATTAAGAAAAGTTATTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATATTACAAAATTCATTTTTAATCCTATTAAGAAAAGTTATTATG  400

seq1  GAGATTAGACATATTTTGTTCTGTCTATATCTGTGCAGCTGACTTGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAGACATATTTTGTTCTGTCTATATCTGTGCAGCTGACTTGGTGG  450

seq1  GTGCTCGTGTGTGTGTGTGTGTCTGTGTATGTCTGTGTGTGTGTGTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCGTGTGTGTGTGTGTGTCTGTGTATGTCTGTGTGTGTGTGTGTAC  500

seq1  ATGCACGTGCATAACTAAAACTTGTTTTCAACATGAAGAATGTCTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGTGCATAACTAAAACTTGTTTTCAACATGAAGAATGTCTTCTGT  550

seq1  TACTACTTGGTGAGCATAGCCATACCAAGAATTC  584
      ||||||||||||||||||||||||||||||||||
seq2  TACTACTTGGTGAGCATAGCCATACCAAGAATTC  584


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