BAC Information

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BAC

Clone NameB6Ng01-295C04
Chromosome15 (Build37)
Map Location 61,209,973 - 61,333,337
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295C04.bB6Ng01-295C04.g
ACCGA091083GA091084
length1,144403
definitionB6Ng01-295C04.b B6Ng01-295C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,332,186 - 61,333,337)(61,209,973 - 61,210,381)
sequence
gaattccagcaataggtattccatccatctctttagcttggcctaaggtg
aattcaccttcctaggggcagtcccttgtccagttgattcatgtggctca
actgaaatattaggtctccaatcagggcagagaccctgttctcttgttct
cttcctaccttccttttcttcctttctttccttttccctttccttttcct
tttccttttccctttcttcttccttccttccttccttccttccttccttc
cttcctttcctcctcctcctcctcccccacttcttcttcgtgtgtcttca
ctgctcctctaacactatgagcctgaagttgccatgctaactgaggactt
cagaaccaggctatgtctgcattaagttagttctaatggatacattcttt
gaatcttgattagtttatcataaacttcattgccccgtgcccccaatata
tatctcctagtgtagatctgatgaattattaccagccagatgttctactg
aaaaaaagagaaatgaattctaaagcacccagatgttctattgaaaatag
attctatattagaatggaatgatgagattcacactgtggaaaagtattaa
aatgcagatgggaggttcccaaagaatgtacagtgatgcctaccaccatg
ctagaactgaaagttggtcttagattaagccaacatggggctacttggat
ctcaacatgctatcccatgctatgagatgcccaagccatacaaagaggat
agggtccctaagaatatatgatacatcacatgactcactcagatttcaga
aagaagagctgattccagacctgaattcaccatccagcaacatacattcg
actcacatgcacaggataatttcaacctgaagaattggaatgaatatttg
aggaggatctgggaaggataccgttccataatcccttttaagtgcagacc
tgattcagagtcagttctgcatttgttgtgtgagcctttcagctgtattt
aaatcaacagcttcaaagcacagacttgcctctccatcttttaatttaag
gcagagctgatcatgtacatatgcatggcagatgtagtgcctctttgagt
ctacattgctactaggagctacatacttacctcatcaaataggg

tggattcatatgtttgaggtgggtgagtggccccaggcctcaaccaagag
cctaaccattgaatatggtctctacaggttcctttctttaccccctaaat
ggtcccatcctggaccttgctgctttctcactctgcaaaataaagtccat
actttaaaaatggcacattctgaggagctagagaaagtagccaaggagct
aaaggaatctgcaaccctataggtggaacaacaatatgaactaaccagta
ccccagagctcttgactctagctgcatatgtatcagaagatggcctagtc
ggccatcagtggaaagagaggcccattggtcgtgcaaactttatctgcct
cagtacaggggaatgccagggccaagaagtaggagtgggtgggtggggga
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_61332186_61333337
seq2: B6Ng01-295C04.b_51_1194 (reverse)

seq1  CCCTA-TTGATGA-GTAAGTATGTAGCTCCTTAGTAGCAATGTAGACTCA  48
      ||||| ||||||| |||||||||||||||| |||||||||||||||||||
seq2  CCCTATTTGATGAGGTAAGTATGTAGCTCC-TAGTAGCAATGTAGACTCA  49

seq1  AAAGAGCACTTCCATCTGCCATTGCATATGTACAATGAACCAGGCTCTGC  98
      ||   |||| | ||||||||| ||||||||||| |||| |   |||||||
seq2  AAGAGGCAC-TACATCTGCCA-TGCATATGTAC-ATGATC--AGCTCTGC  94

seq1  CTTAAATTAAAAGATGGAGAGGCCAAGTCTTGTGCTTTTGAAGCTGTTGA  148
      |||||||||||||||||||||| |||||| ||||| ||||||||||||||
seq2  CTTAAATTAAAAGATGGAGAGG-CAAGTC-TGTGC-TTTGAAGCTGTTGA  141

seq1  TTTAAATACAGCTGAAAGGCTCACACAACAAATGCAGAAACTGACTCTTG  198
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  TTTAAATACAGCTGAAAGGCTCACACAACAAATGCAG-AACTGACTC-TG  189

seq1  AATCAGGTCTGCACTTAAAA-GGATTATGGAACGGTATCCTT-CCAGATC  246
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  AATCAGGTCTGCACTTAAAAGGGATTATGGAACGGTATCCTTCCCAGATC  239

seq1  CTCCTCAAATATTCATTCCAATTCTTCAGGTTGAAATTATCCTGTGCATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAAATATTCATTCCAATTCTTCAGGTTGAAATTATCCTGTGCATG  289

seq1  TGAGTCGAATGTATGTTGCTGGATGGTGAATTCAGGTCTGGAATCAGCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCGAATGTATGTTGCTGGATGGTGAATTCAGGTCTGGAATCAGCTC  339

seq1  TTCTTTCCTGAAATCTGAGTGAGTCATGTGATGTATCATATATTCTTAGG  396
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTT-CTGAAATCTGAGTGAGTCATGTGATGTATCATATATTCTTAGG  388

seq1  GACCCTATCCTCTTTGTATGGCTTGGGCATCTCATAGCATGGGATAGCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTATCCTCTTTGTATGGCTTGGGCATCTCATAGCATGGGATAGCAT  438

seq1  GTTGAGATCCAAGTAGCCCCATGTTGGCTTAATCTAAGACCAACTTTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGATCCAAGTAGCCCCATGTTGGCTTAATCTAAGACCAACTTTCAG  488

seq1  TTCTAGCATGGTGGTAGGCATCACTGTACATTCTTTGGGAACCTCCCATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCATGGTGGTAGGCATCACTGTACATTCTTTGGGAACCTCCCATC  538

seq1  TGCATTTTAATACTTTTCCACAGTGTGAATCTCATCATTCCATTCTAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTAATACTTTTCCACAGTGTGAATCTCATCATTCCATTCTAATA  588

seq1  TAGAATCTATTTTCAATAGAACATCTGGGTGCTTTAGAATTCATTTCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTATTTTCAATAGAACATCTGGGTGCTTTAGAATTCATTTCTCT  638

seq1  TTTTTTCAGTAGAACATCTGGCTGGTAATAATTCATCAGATCTACACTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGTAGAACATCTGGCTGGTAATAATTCATCAGATCTACACTAG  688

seq1  GAGATATATATTGGGGGCACGGGGCAATGAAGTTTATGATAAACTAATCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATATATTGGGGGCACGGGGCAATGAAGTTTATGATAAACTAATCA  738

seq1  AGATTCAAAGAATGTATCCATTAGAACTAACTTAATGCAGACATAGCCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAAAGAATGTATCCATTAGAACTAACTTAATGCAGACATAGCCTG  788

seq1  GTTCTGAAGTCCTCAGTTAGCATGGCAACTTCAGGCTCATAGTGTTAGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAGTCCTCAGTTAGCATGGCAACTTCAGGCTCATAGTGTTAGAG  838

seq1  GAGCAGTGAAGACACACGAAGAAGAAGTGGGGGAGGAGGAGGAGGAGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGAAGACACACGAAGAAGAAGTGGGGGAGGAGGAGGAGGAGGAA  888

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAGAAAGGGAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAGAAAGGGAAA  938

seq1  AGGAAAAGGAAAAGGAAAGGGAAAAGGAAAGAAAGGAAGAAAAGGAAGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGGAAAAGGAAAGGGAAAAGGAAAGAAAGGAAGAAAAGGAAGGT  988

seq1  AGGAAGAGAACAAGAGAACAGGGTCTCTGCCCTGATTGGAGACCTAATAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAACAAGAGAACAGGGTCTCTGCCCTGATTGGAGACCTAATAT  1038

seq1  TTCAGTTGAGCCACATGAATCAACTGGACAAGGGACTGCCCCTAGGAAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGAGCCACATGAATCAACTGGACAAGGGACTGCCCCTAGGAAGG  1088

seq1  TGAATTCACCTTAGGCCAAGCTAAAGAGATGGATGGAATACCTATTGCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCACCTTAGGCCAAGCTAAAGAGATGGATGGAATACCTATTGCTG  1138

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1144


seq1: chr15_61209973_61210381
seq2: B6Ng01-295C04.g_66_474

seq1  GAATTCTGGATTCATATGTTTGAGGTGGGTGAGTGGCCCCAGGCCTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATTCATATGTTTGAGGTGGGTGAGTGGCCCCAGGCCTCAAC  50

seq1  CAAGAGCCTAACCATTGAATATGGTCTCTACAGGTTCCTTTCTTTACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCCTAACCATTGAATATGGTCTCTACAGGTTCCTTTCTTTACCCC  100

seq1  CTAAATGGTCCCATCCTGGACCTTGCTGCTTTCTCACTCTGCAAAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGTCCCATCCTGGACCTTGCTGCTTTCTCACTCTGCAAAATAAA  150

seq1  GTCCATACTTTAAAAATGGCACATTCTGAGGAGCTAGAGAAAGTAGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATACTTTAAAAATGGCACATTCTGAGGAGCTAGAGAAAGTAGCCAA  200

seq1  GGAGCTAAAGGAATCTGCAACCCTATAGGTGGAACAACAATATGAACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAAGGAATCTGCAACCCTATAGGTGGAACAACAATATGAACTAA  250

seq1  CCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAGAAGATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAGAAGATGGC  300

seq1  CTAGTCGGCCATCAGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCGGCCATCAGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTTTAT  350

seq1  CTGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTAGGAGTGGGTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTAGGAGTGGGTGGGT  400

seq1  GGGGGAGTG  409
      |||||||||
seq2  GGGGGAGTG  409


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