BAC Information

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BAC

Clone NameB6Ng01-296C09
Chromosome15 (Build37)
Map Location 96,343,017 - 96,484,382
singlet/doubletdoublet
Overlap geneSlc38a1
Upstream geneNell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip
Downstream geneSlc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296C09.bB6Ng01-296C09.g
ACCGA091832GA091833
length1,204962
definitionB6Ng01-296C09.b B6Ng01-296C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,483,171 - 96,484,382)(96,343,017 - 96,343,962)
sequence
gaattccttgtgtaggaatgttgaggaattcttagctggagtctgattac
gtagcccaggccggcctcaaattcttgttcttccagctacctcacaagtg
ctgggcaaggaattttcaattgtatgtataggcaaatgagcatcatttga
tattactctcaaacacaaagctggatgctattcttaaagtcaaagagtaa
ttgtaagccctgtacccagtgagtatatattaacagtcggtatgtatgga
ttgtaagggttgaagagttcggttttcttcatgcattttaatgcacttcc
acattttctacagtgaggaagttttgtaactgcatgcacgcttaaacaat
aaaatgggaaaaaagggattagaagcgattcctgaatcgctcattattct
ttgagacttggttcttcagcagaaggaaggagagctggagggatgtaaag
aaatcaaggcaatttccttctccttcctccttttcttttctccctccctc
catccttcctgtctttaatgataaaagactcgagtacttcacaaccagag
gagaagaggatgcagatatggaagtaaaagggggggggggaaccccacag
gagctggagagatggctcagtggttagcagtggttgctgctcccaattaa
gagggtctgcgtttcccagcgcccacattgagcagttcacaaccaagtgg
gagctacagctccaggaatctgatgcccccttgcggccttctttggcaca
catacatgcgtgaacatacatgcgcaagcgcgagaacaggtacaaatgaa
taaaaaaataaaacaatgcaaatggaaatgtccggtcgcaataaggatca
aacgaagaatgctgcgcgaaaggacagcactggaagaaaatcacgattga
aggacgtgcgtgtctagcggtcagagggcagtctctggcattctgtccct
ttgtacacagagaaagaaaaaaaaaaacattgcatttccgtgttttctaa
ataagaacaactgaacaccaggttacaggtgttgggctcataattaactc
atattgctagtggctcgtacctgagccacaggaatttgcctagccagagc
actgataatgaacggaccgtacagcggaacgttagcacgcaagcgcctct
tctaggccaacatcaattgagttcaatttacaacgctcactctcatactg
agaa
gaattcactgcctgcgagaatggtggaaagatggtttaaacaagggctgt
ggtacttcagaaagggaactcagctagccaggttgaaaagcaggacacaa
aaagaataatctcttagaggaaacacaccatctgtcactcatggaggagg
aaggcatctgggagacttcgtagcaagaactaaacttctcaggaagtgac
agtcaatttggcaggaggattgctcagatatgcaccagcctcccacttaa
agaaccagcaaggtgcatcatgggacataacaccacttggtggcagcaca
gttatcaaggcaggagctgggtataggctactacaggcagaacttcagcc
agacttccagggctttagcactcagaggccagtcctctgtgagggacctg
caaacccctatgcttccttttcaaccagcacatgataaaatgtatttagt
acagtagctttaagatacatatttacttttaaaaggttattcttgaaata
gtaagatagtattttaaaagttattttgctgtgatgaaatacaccggcaa
aggcaagttaagagagagagggtttattctagatcacagtccctggttat
agtctgtttttgttttttggcttttttgttttttttttgcttgttgtttg
tttgttttgttctgttttgttggtttttcaaggcagggtttctctgtgta
gccctggctgttcctggaactcacttttgtagaccaggctgcccctcgaa
ctcagaaatccgcctgccctctgcctcccgagtgctgggattaaaggcgt
gcgccaccactgcccggctttatagtctgtttttgtaaaggaagcccacg
tggcaggagtctaaaagttatttatatcatggtttaccaatcatgaacag
agagattgagggacctcataccggtggtccttttgggctctctctctctt
catctggatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_96483171_96484382
seq2: B6Ng01-296C09.b_46_1249 (reverse)

seq1  TTCTCAGTATGAGA-TGAGCGTTTGTAAA-TGAACTCTAATTAAATGTTG  48
      |||||||||||||| |||||| ||||||| ||||||| ||||  ||||||
seq2  TTCTCAGTATGAGAGTGAGCG-TTGTAAATTGAACTC-AATT-GATGTTG  47

seq1  CGCTTTAGAAGAAGCGC-TGCGTGCTAACGTTCTGCTGTTTCGGTTCCGT  97
        |  ||||||| |||| ||||||||||||||| |||| | |||| |  |
seq2  GCC--TAGAAGAGGCGCTTGCGTGCTAACGTTCCGCTG-TACGGTCCGTT  94

seq1  CATTATCAGTGCTCCTGCTTAGGCAAAATCCTGTGGCTCAGGTACGAGCC  147
      ||||||||||||| |||  |||||||| ||||||||||||||||||||||
seq2  CATTATCAGTGCT-CTGGCTAGGCAAATTCCTGTGGCTCAGGTACGAGCC  143

seq1  ACTTAGCAATATGAGTTTAATAATGAGCCCAACAACCTGT-ACCT-GTGT  195
      || |||||||||||| ||||| ||||||||||| |||||| |||| ||||
seq2  AC-TAGCAATATGAG-TTAATTATGAGCCCAAC-ACCTGTAACCTGGTGT  190

seq1  TCAG-TGTTCTTATTTTAAGAAACACGGAAATGCATTGTTTTTTTTTTTC  244
      |||| |||||||| ||||  ||||||||||||||| ||||||||||||||
seq2  TCAGTTGTTCTTA-TTTAGAAAACACGGAAATGCAATGTTTTTTTTTTTC  239

seq1  TTTCTCTGTGTTACAAAGGGACAGAATGCCAGAGACTTGCCCTCTGACCG  294
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TTTCTCTGTG-TACAAAGGGACAGAATGCCAGAGAC-TGCCCTCTGACCG  287

seq1  CTAGACACGCACGTCCTTCAATCGTGATTTTCTTCCAGTGCTGTCCTTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACACGCACGTCCTTCAATCGTGATTTTCTTCCAGTGCTGTCCTTTC  337

seq1  GCGCAGCATTCTTCGTTTGATCCTTATTGCGACCGGACATTTCCATTTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGCATTCTTCGTTTGATCCTTATTGCGACCGGACATTTCCATTTGC  387

seq1  ATTTGTTTTATTTTTTTATTCATTTGTACCTGTTCTCGCGCTTGCGCATG  444
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTGTTTTATTTTTTTATTCATTTGTACCTGTTCTCGCGCTTGCGCATG  436

seq1  TATGTTCACGCATGTATGTGTGCCAAAGAAGGCCGCAAGGGGGCATCAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCACGCATGTATGTGTGCCAAAGAAGGCCGCAAGGGGGCATCAGA  486

seq1  TTCCTGGAGCTGTAGCTCCCACTTGGTTGTGAACTGCTCAATGTGGGCGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAGCTGTAGCTCCCACTTGGTTGTGAACTGCTCAATGTGGGCGC  536

seq1  TGGGAAACGCAGACCCTCTTAATTGGGAGCAGCAACCACTGCTAACCACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACGCAGACCCTCTTAATTGGGAGCAGCAACCACTGCTAACCACT  586

seq1  GAGCCATCTCTCCAGCTCCTGTGGGGTTCCCCCCCCCCCTTTTACTTCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCTCCAGCTCCTGTGGGGTTCCCCCCCCCCCTTTTACTTCCA  636

seq1  TATCTGCATCCTCTTCTCCTCTGGTTGTGAAGTACTCGAGTCTTTTATCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCATCCTCTTCTCCTCTGGTTGTGAAGTACTCGAGTCTTTTATCA  686

seq1  TTAAAGACAGGAAGGATGGAGGGAGGGAGAAAAGAAAAGGAGGAAGGAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACAGGAAGGATGGAGGGAGGGAGAAAAGAAAAGGAGGAAGGAGA  736

seq1  AGGAAATTGCCTTGATTTCTTTACATCCCTCCAGCTCTCCTTCCTTCTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTGCCTTGATTTCTTTACATCCCTCCAGCTCTCCTTCCTTCTGC  786

seq1  TGAAGAACCAAGTCTCAAAGAATAATGAGCGATTCAGGAATCGCTTCTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACCAAGTCTCAAAGAATAATGAGCGATTCAGGAATCGCTTCTAA  836

seq1  TCCCTTTTTTCCCATTTTATTGTTTAAGCGTGCATGCAGTTACAAAACTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTTTCCCATTTTATTGTTTAAGCGTGCATGCAGTTACAAAACTT  886

seq1  CCTCACTGTAGAAAATGTGGAAGTGCATTAAAATGCATGAAGAAAACCGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGTAGAAAATGTGGAAGTGCATTAAAATGCATGAAGAAAACCGA  936

seq1  ACTCTTCAACCCTTACAATCCATACATACCGACTGTTAATATATACTCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCAACCCTTACAATCCATACATACCGACTGTTAATATATACTCAC  986

seq1  TGGGTACAGGGCTTACAATTACTCTTTGACTTTAAGAATAGCATCCAGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACAGGGCTTACAATTACTCTTTGACTTTAAGAATAGCATCCAGCT  1036

seq1  TTGTGTTTGAGAGTAATATCAAATGATGCTCATTTGCCTATACATACAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTGAGAGTAATATCAAATGATGCTCATTTGCCTATACATACAAT  1086

seq1  TGAAAATTCCTTGCCCAGCACTTGTGAGGTAGCTGGAAGAACAAGAATTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTCCTTGCCCAGCACTTGTGAGGTAGCTGGAAGAACAAGAATTT  1136

seq1  GAGGCCGGCCTGGGCTACGTAATCAGACTCCAGCTAAGAATTCCTCAACA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGGCCTGGGCTACGTAATCAGACTCCAGCTAAGAATTCCTCAACA  1186

seq1  TTCCTACACAAGGAATTC  1212
      ||||||||||||||||||
seq2  TTCCTACACAAGGAATTC  1204

seq1: chr15_96343017_96343962
seq2: B6Ng01-296C09.g_67_1028

seq1  GAATTCACTGCCTGCGAGAATGGTGGAAAGATGGTTTAAACAAGGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCCTGCGAGAATGGTGGAAAGATGGTTTAAACAAGGGCTGT  50

seq1  GGTACTTCAGAAAGGGAACTCAGCTAGCCAGGTTGAAAAGCAGGACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTCAGAAAGGGAACTCAGCTAGCCAGGTTGAAAAGCAGGACACAA  100

seq1  AAAGAATAATCTCTTAGAGGAAACACACCATCTGTCACTCATGGAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAATCTCTTAGAGGAAACACACCATCTGTCACTCATGGAGGAGG  150

seq1  AAGGCATCTGGGAGACTTCGTAGCAAGAACTAAACTTCTCAGGAAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCTGGGAGACTTCGTAGCAAGAACTAAACTTCTCAGGAAGTGAC  200

seq1  AGTCAATTTGGCAGGAGGATTGCTCAGATATGCACCAGCCTCCCACTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATTTGGCAGGAGGATTGCTCAGATATGCACCAGCCTCCCACTTAA  250

seq1  AGAACCAGCAAGGTGCATCATGGGACATAACACCACTTGGTGGCAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGCAAGGTGCATCATGGGACATAACACCACTTGGTGGCAGCACA  300

seq1  GTTATCAAGGCAGGAGCTGGGTATAGGCTACTACAGGCAGAACTTCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAAGGCAGGAGCTGGGTATAGGCTACTACAGGCAGAACTTCAGCC  350

seq1  AGACTTCCAGGGCTTTAGCACTCAGAGGCCAGTCCTCTGTGAGGGACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCAGGGCTTTAGCACTCAGAGGCCAGTCCTCTGTGAGGGACCTG  400

seq1  CAAACCCCTATGCTTCCTTTTCAACCAGCACATGATAAAATGTATTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCTATGCTTCCTTTTCAACCAGCACATGATAAAATGTATTTAGT  450

seq1  ACAGTAGCTTTAAGATACATATTTACTTTTAAAAGGTTATTCTTGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCTTTAAGATACATATTTACTTTTAAAAGGTTATTCTTGAAATA  500

seq1  GTAAGATAGTATTTTAAAAGTTATTTTGCTGTGATGAAATACACCGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATAGTATTTTAAAAGTTATTTTGCTGTGATGAAATACACCGGCAA  550

seq1  AGGCAAGTTAAGAGAGAGAGGGTTTATTCTAGATCACAGTCCCTGGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTTAAGAGAGAGAGGGTTTATTCTAGATCACAGTCCCTGGTTAT  600

seq1  AGTCTGTTTTTGTTTTTTGGCTTTTTTGTTTTTTTTTTGCTTGTTGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTTTTGTTTTTTGGCTTTTTTGTTTTTTTTTTGCTTGTTGTTTG  650

seq1  TTTGTTTTGTTCTGTTTTGTTGGTTTTTCAAGGCAGGGTTTCTCTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTCTGTTTTGTTGGTTTTTCAAGGCAGGGTTTCTCTGTGTA  700

seq1  GCCCTGGCTG-TCCTGGAACTCAC-TTTGTAGACCAGGCTG-CCCTCGAA  747
      |||||||||| ||||||||||||| |||||||||||||||| ||||||||
seq2  GCCCTGGCTGTTCCTGGAACTCACTTTTGTAGACCAGGCTGCCCCTCGAA  750

seq1  CTCAGAAATCCGCCTG-CCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGT  796
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCCGCCTGCCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGT  800

seq1  GCGCCACCACTGCCCGGC-TTATAGTCTGTTTTTGT-AAGGAAG-CCACA  843
      |||||||||||||||||| ||||||||||||||||| ||||||| |||| 
seq2  GCGCCACCACTGCCCGGCTTTATAGTCTGTTTTTGTAAAGGAAGCCCACG  850

seq1  GTGCAGGAGTCTAAGAGTTAGTTATATCAT-GTTTACC-ATCAGGAACAG  891
        |||||||||||| ||||| ||||||||| ||||||| |||| ||||||
seq2  TGGCAGGAGTCTAAAAGTTATTTATATCATGGTTTACCAATCATGAACAG  900

seq1  AGAGAATGAGGGA-CTCATA-CGGTGG-CCTTT--GGCTCTCTC-CTCTT  935
      ||||| ||||||| |||||| |||||| |||||  ||||||||| |||||
seq2  AGAGATTGAGGGACCTCATACCGGTGGTCCTTTTGGGCTCTCTCTCTCTT  950

seq1  CATCTGG-TCTA  946
      ||||||| ||||
seq2  CATCTGGATCTA  962