BAC Information

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BAC

Clone NameB6Ng01-297P16
Chromosome3 (Build37)15 (Build37)
Map Location 93,234,381 - 93,234,54437,310,191 - 37,310,510
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn
Downstream geneEG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297P16.bB6Ng01-297P16.g
ACCGA093205GA093206
length970320
definitionB6Ng01-297P16.b B6Ng01-297P16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,234,381 - 93,234,544)(37,310,191 - 37,310,510)
sequence
gaattcttgttttttttttaaaggacattttgtgtacacacacacacacg
cacgtacgtacgcacgcacgcacacgcgcgcacacacacacaaacatacc
catatgattcaattagctcttattttcttacacgagtaatttcaaagttt
attgttctattacctttgggggagggggatgagacaagttcttattacat
agccctggctggcctagagctcactctgtagaccaggctggccttctaca
gaaagacttacctgccgctgcctccccagtgccatcatgactggcatatc
tttttttttttttaacttataaaagcaagcatttaatttggattacagtt
tcatgggactaggttctatgacattggagcaatagaacagcttacagctc
acattttgatccacatccacaaggcagagagagtacttggggttgaagga
gttttttgaaacctcaaatccaacctataatgacacacctccaacaaggc
cacacctcctaatccttcccaaacatttcgaccaaccagggataaagcat
tcagataaaagagtcaaacccgttcaaaccactgcagtcctattccttgg
tgaccaaattcctattcagagtgtccttctctaagcctatatcctgaaat
gtactccctactctcacttgtcaaagctttagagttatagtttcaacatt
gaactttttgatgcattgaagttgatttgtgtggagggtgagagaagtat
aaagttttattcttctacacataggtatccagtttttccaaagccattcg
ttaaagatgctgtctttcctccaagtatattttttttcctcttatttttt
ttttattacgtattttcctcaattacatttccatgctatccccaaaagtg
tcccacacccccccccactcccctacccacccatttcccattttttgggc
cctggtgttccctgtactgg
attgtgcagcaaagccttaaatccataatgaggaacgctaatgtaccgaa
tccatgagagtacagacagaaagcctgtatgcagtgatagacctgaaaaa
aaaaccgaacctctaaattctgtctttgctgcccttgacccagtcaggca
gccctttcagggccactattccctggctcctacataatggctattctctc
tatcccgcactttctcatgtgtggtatcttcttttgcttttgctctcctc
ctcctcctcttcctcttcctcctcctcttcctcctcctcctctaccacct
cctcctcctcttcttcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93234381_93234544
seq2: B6Ng01-297P16.b_58_292

seq1  TTTTTTTTTTAAAGGAGA--------------GCCCAGAAGCAGG--GGT  34
      |||||||||||||||| |               | || | ||| |   ||
seq2  TTTTTTTTTTAAAGGACATTTTGTGTACACACACACACACGCACGTACGT  50

seq1  ---------------CGGGGG---------AATAACAT------------  48
                     || | |         |  |||||            
seq2  ACGCACGCACGCACACGCGCGCACACACACACAAACATACCCATATGATT  100

seq1  -------CTCTTCTGCTTTT------GATATATCAAATTCTTTTTTTTTT  85
             ||||| |  | ||      |  || ||||| | | || || | 
seq2  CAATTAGCTCTTATTTTCTTACACGAGTAATTTCAAAGTTTATTGTTCTA  150

seq1  TT---TTTTTG---GTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGT  129
      ||   |||  |   |      |||||| | | |   |  |||||||||| 
seq2  TTACCTTTGGGGGAGGGGGATGAGACAAGTTCTTATTACATAGCCCTGGC  200

seq1  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCT  164
      || ||| || |||||||||||||||||||||||||
seq2  TGGCCTAGAGCTCACTCTGTAGACCAGGCTGGCCT  235

seq1: chr15_37310191_37310510
seq2: B6Ng01-297P16.g_70_395

seq1  GAATTCATTGTGCAGCAAAGCCTTAAATCCATAATGAGGAACGCTAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGCAGCAAAGCCTTAAATCCATAATGAGGAACGCTAATGT  50

seq1  ACCGAATCCATGAGAGTACAGACAGAAAGCCTGTATGCAGTGATAGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAATCCATGAGAGTACAGACAGAAAGCCTGTATGCAGTGATAGACCT  100

seq1  GAAAAAAAAACCGAACCTCTAAATTCTGTCTTTGCTGCCCTTGACCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAACCGAACCTCTAAATTCTGTCTTTGCTGCCCTTGACCCAGT  150

seq1  CAGGCAGCCCTTTCAGGGCCACTATTCCCTGGCTCCTACATAATGGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCCCTTTCAGGGCCACTATTCCCTGGCTCCTACATAATGGCTAT  200

seq1  TCTCTCTATCCCGCACTTTCTCATGTGTGGTATCTTCTTTTGCTTTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTATCCCGCACTTTCTCATGTGTGGTATCTTCTTTTGCTTTTGCT  250

seq1  CTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCT-  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTA  300

seq1  -----TCCTCCTCCTCCTCCTCCTCC  320
           ||||||||||| || ||||||
seq2  CCACCTCCTCCTCCTCTTCTTCCTCC  326