BAC Information

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BAC

Clone NameB6Ng01-300L15
Chromosome15 (Build37)
Map Location 78,243,856 - 78,289,873
singlet/doubletdoublet
Overlap geneMpst, Kctd17, Tmprss6
Upstream geneBC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst
Downstream geneIl2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300L15.bB6Ng01-300L15.g
ACCGA095228GA095229
length1,130470
definitionB6Ng01-300L15.b B6Ng01-300L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,288,738 - 78,289,873)(78,243,856 - 78,244,331)
sequence
gaattccacgctgggtacgctgctctgtccttgtattggcctctttcctt
tagaatcataggtcttcttgtctggtccgttgtgggggtggaggtcccga
ggtgtccactgtggggacagggaaccccagcttagaaacactggggggat
ctcagagggtaatctgggtgagggctctgagcccaggtgggggctcaggt
agacgtgtgcttgcacgcctgtgccttagatgtgagtgtaagtcgcccct
ccccccatgggttagccatgtgaaaacctacctctgctgcctgtcactca
aatcaacctacctgcctaccctctttcctactgaagttagaaacaatctt
gccaatccatgcttaatcctttggccatgcaggacttaactaggtctgtt
gaagaggatggttctggcacactcaagaactctctctttacccttccctc
ctcgctcagcctgataccacacggttagaatcacgttgattttctcccag
acgctataatagcttgctactgaggcctgaatagccaggtgccaggcaga
ccactctgtggtacaaggttaggggtaccatgcacactgtagtctacgga
ctggtgactcctggggttatacacacaacatgctatctaagctactgtac
cctatgacacaagcctagtgctcagattcccactgtcccagctagagtgg
ccacctagagcagacgcaggagtgagcacctcgacccctctcaaggagga
agatggtttcaaatcctaggtgtgcctgttctgactccctttcctcctgc
cctcggtggatggaagcgctgacctcgaaagcacagttcaacagttaaag
ccaagattgtcaataattattctgagctgggccaggtatacctacctgcc
ttgacaagggtggtgtggaggtcaagaacacagaccctgtttccatcatc
tgtctgtcagtctatctatctatctatctatcgatctatctatctatcta
tctatctatcacctacgtatctatctatctatctatcgttctatctatct
atcctatccatcgatgagaatgccctgtgcaagtgtgtttcctcctggtc
tagaggcccccccaggcccccatagcagct
ctgaccaacgaaggcctggagaagagcccagaggagatcaaacgcctgtt
taaggagaagaaggtggacctgtctaagcccttggtagccacgtgtggct
ccggtgtcacagcctgccacgtggtcctgggggccttcctctgtggcaag
tcagacgtgcctgtctatgatggctcctgggtagagtggtacatgcgtgc
ccagccagagcatatcatctctgagggccgagggaagacccagtgaagcc
aggcaggacacagtgcagcttgggtgacatctgaccatcacagtaccagc
cactggtcactctgaccctgctttgccaagagtcctttctcagacaactg
agggagtgtttggggtgatatcccagagacctggagttccagtgactcat
agatactcagctgaggtagccaagaaggtggcaggcagtaagagggtacc
caggggagggagggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78288738_78289873
seq2: B6Ng01-300L15.b_45_1174 (reverse)

seq1  AGCTGCTATGGGGGGCTGGGGGGGGCTTCTAGAACAAGAAGAAAAACACA  50
      |||||||||||||| || |||||||| |||||| || || |  |||||||
seq2  AGCTGCTATGGGGGCCT-GGGGGGGCCTCTAGACCAGGAGG--AAACACA  47

seq1  CTTGCACAAGGCATTTCCCCATAGATAGATA-GATAGATAGATAGATAGA  99
      |||||||| ||||||  | ||| ||| |||| ||||||||||||||  ||
seq2  CTTGCACAGGGCATT--CTCATCGATGGATAGGATAGATAGATAGAACGA  95

seq1  TAGATAGATAGATAGATAGGTAGGTAGATAGATAGATAGATAGATAGATA  149
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATACGTAGGT-GATAGATAGATAGATAGATAGATA  144

seq1  GATAGATAGATAGATAGATAGATAGACTGACAGACAGATGATGGAAACAG  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGATAGATAGATAGATAGATAGACTGACAGACAGATGATGGAAACAG  194

seq1  GGTCTGTGTTCTTGACCTCCACACCACCCCTTGTCAAGGCAGGTAGGTAT  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGTCTGTGTTCTTGACCTCCACACCA-CCCTTGTCAAGGCAGGTAGGTAT  243

seq1  ACCTGGCCCAGCTCAGAATAATTATTGACAATCTTGGCTTTAACTGTTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCCCAGCTCAGAATAATTATTGACAATCTTGGCTTTAACTGTTGA  293

seq1  ACTGTGCTTTCGAGGTCAGCGCTTCCATCCACCGAGGGCAGGAGGAAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTTTCGAGGTCAGCGCTTCCATCCACCGAGGGCAGGAGGAAAGG  343

seq1  GAGTCAGAACAGGCACACCTAGGATTTGAAACCATCTTCCTCCTTGAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAACAGGCACACCTAGGATTTGAAACCATCTTCCTCCTTGAGAG  393

seq1  GGGTCGAGGTGCTCACTCCTGCGTCTGCTCTAGGTGGCCACTCTAGCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGAGGTGCTCACTCCTGCGTCTGCTCTAGGTGGCCACTCTAGCTGG  443

seq1  GACAGTGGGAATCTGAGCACTAGGCTTGTGTCATAGGGTACAGTAGCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGGAATCTGAGCACTAGGCTTGTGTCATAGGGTACAGTAGCTTA  493

seq1  GATAGCATGTTGTGTGTATAACCCCAGGAGTCACCAGTCCGTAGACTACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCATGTTGTGTGTATAACCCCAGGAGTCACCAGTCCGTAGACTACA  543

seq1  GTGTGCATGGTACCCCTAACCTTGTACCACAGAGTGGTCTGCCTGGCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGGTACCCCTAACCTTGTACCACAGAGTGGTCTGCCTGGCACC  593

seq1  TGGCTATTCAGGCCTCAGTAGCAAGCTATTATAGCGTCTGGGAGAAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATTCAGGCCTCAGTAGCAAGCTATTATAGCGTCTGGGAGAAAATC  643

seq1  AACGTGATTCTAACCGTGTGGTATCAGGCTGAGCGAGGAGGGAAGGGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGATTCTAACCGTGTGGTATCAGGCTGAGCGAGGAGGGAAGGGTAA  693

seq1  AGAGAGAGTTCTTGAGTGTGCCAGAACCATCCTCTTCAACAGACCTAGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGTTCTTGAGTGTGCCAGAACCATCCTCTTCAACAGACCTAGTT  743

seq1  AAGTCCTGCATGGCCAAAGGATTAAGCATGGATTGGCAAGATTGTTTCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGCATGGCCAAAGGATTAAGCATGGATTGGCAAGATTGTTTCTA  793

seq1  ACTTCAGTAGGAAAGAGGGTAGGCAGGTAGGTTGATTTGAGTGACAGGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTAGGAAAGAGGGTAGGCAGGTAGGTTGATTTGAGTGACAGGCA  843

seq1  GCAGAGGTAGGTTTTCACATGGCTAACCCATGGGGGGAGGGGCGACTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTAGGTTTTCACATGGCTAACCCATGGGGGGAGGGGCGACTTAC  893

seq1  ACTCACATCTAAGGCACAGGCGTGCAAGCACACGTCTACCTGAGCCCCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATCTAAGGCACAGGCGTGCAAGCACACGTCTACCTGAGCCCCCA  943

seq1  CCTGGGCTCAGAGCCCTCACCCAGATTACCCTCTGAGATCCCCCCAGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTCAGAGCCCTCACCCAGATTACCCTCTGAGATCCCCCCAGTGT  993

seq1  TTCTAAGCTGGGGTTCCCTGTCCCCACAGTGGACACCTCGGGACCTCCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCTGGGGTTCCCTGTCCCCACAGTGGACACCTCGGGACCTCCAC  1043

seq1  CCCCACAACGGACCAGACAAGAAGACCTATGATTCTAAAGGAAAGAGGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAACGGACCAGACAAGAAGACCTATGATTCTAAAGGAAAGAGGCC  1093

seq1  AATACAAGGACAGAGCAGCGTACCCAGCGTGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  AATACAAGGACAGAGCAGCGTACCCAGCGTGGAATTC  1130

seq1: chr15_78243856_78244331
seq2: B6Ng01-300L15.g_65_540

seq1  GAATTCCTGACCAACGAAGGCCTGGAGAAGAGCCCAGAGGAGATCAAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACCAACGAAGGCCTGGAGAAGAGCCCAGAGGAGATCAAACG  50

seq1  CCTGTTTAAGGAGAAGAAGGTGGACCTGTCTAAGCCCTTGGTAGCCACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTAAGGAGAAGAAGGTGGACCTGTCTAAGCCCTTGGTAGCCACGT  100

seq1  GTGGCTCCGGTGTCACAGCCTGCCACGTGGTCCTGGGGGCCTTCCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCCGGTGTCACAGCCTGCCACGTGGTCCTGGGGGCCTTCCTCTGT  150

seq1  GGCAAGTCAGACGTGCCTGTCTATGATGGCTCCTGGGTAGAGTGGTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTCAGACGTGCCTGTCTATGATGGCTCCTGGGTAGAGTGGTACAT  200

seq1  GCGTGCCCAGCCAGAGCATATCATCTCTGAGGGCCGAGGGAAGACCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCCCAGCCAGAGCATATCATCTCTGAGGGCCGAGGGAAGACCCAGT  250

seq1  GAAGCCAGGCAGGACACAGTGCAGCTTGGGTGACATCTGACCATCACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGGCAGGACACAGTGCAGCTTGGGTGACATCTGACCATCACAGT  300

seq1  ACCAGCCACTGGTCACTCTGACCCTGCTTTGCCAAGAGTCCTTTCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCACTGGTCACTCTGACCCTGCTTTGCCAAGAGTCCTTTCTCAGA  350

seq1  CAACTGAGGGAGTGTTTGGGGTGATATCCCAGAGACCTGGAGTTCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGGGAGTGTTTGGGGTGATATCCCAGAGACCTGGAGTTCCAGTG  400

seq1  ACTCATAGATACTCAGCTGAGGTAGCCAAGAAGGTGGCAGGCAGTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGATACTCAGCTGAGGTAGCCAAGAAGGTGGCAGGCAGTAAGAG  450

seq1  GGTACCCAGGGGAGGGAGGGAGGGAG  476
      ||||||||||||||||||||||||||
seq2  GGTACCCAGGGGAGGGAGGGAGGGAG  476