BAC Information

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BAC

Clone NameB6Ng01-300N03
Chromosome15 (Build37)
Map Location 27,485,481 - 27,608,555
singlet/doubletdoublet
Overlap geneAnk, BC087945, LOC100040622, BC052328
Upstream geneFbxl7, LOC622531, LOC625311
Downstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300N03.bB6Ng01-300N03.g
ACCGA095296GA095297
length1,1911,094
definitionB6Ng01-300N03.b B6Ng01-300N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,485,481 - 27,486,667)(27,607,457 - 27,608,555)
sequence
gaattcttctagacctatctaactgtctgtctgtctatctatctactacc
tatccactacctatatgtctagctatccttagatatagatttgtaataat
gagcctttataagaacctctctccctcattcacctagacacacatctgta
catgtgcacatgcacgtgtatatacctgcagcactatcctaataacacag
ttggggagatatttgctagaagtcatgcagctttccacccagatggcatt
aagacaacaagacaacctataaaatgctattacaaatgttagctacattt
aaaaagcaaagcaaaacaaaaccatttgacaggttgggacctcggagctg
gagaagggagtaaaggcagccgctgctacacaaatactcaacctaggcat
ggagatttgtccatcctgttctgctcaggcgccatcacatgtctctgtgt
tctagtttgctttctgttgctgtgatggagatcatggacagaagccgctt
ggggaggaaagggttaatttcatctcacaactccagattgtagtccatca
ctgagcaagccaaggcaggagctggaggcaggaaccaagcagactatgaa
ggcacactagttattgacctacttcctgtgacttgttcagcccactttct
tatacaacctaggccaacctgtctaggagtggaactgtataatgagccaa
accgttctgtatcagtcatcaatcaaacattctcccgcccccacccccac
aggcttgcctacagcatattctaatagagctatttcctcatttgagactc
tctcttgtaagatgaaccttagcttgtgtcaaggtgacagaaatctaacc
ggcagtctgtcggtctacttggccatttgaggtaagacgtaaagttctta
cacagatgctgtttgtaagcgagcatcaccctccccacctgctgctgggc
ttgagctgcgggttgcctgtttttaggaccttctgcctagcctccttcag
gcacacaaaaccagctcagatccaggaagaccacattctttcagagccct
gatctgctcttgaccctatgacgtcagtctctcagaccacctgggaacct
tagctctatctagaagctaagtaagggaatcagggtgcttcgagacctct
tagtgtcctacctctgttagtcagtcagctttccagcacag

gaattcagaaggtgagcatgcctgcgcccagggagagaggcgaactggaa
cagttagtatcagccgagaaaggagtgatgcccacagtgtgtgtgaactt
tacgtccacagggactacgggggatgggcgtttatactggagctcctctg
gccttggggagctgcttggtaagcagggggctcaggcagttagtaactgt
cctgaggggtgcaagtagctgttcccaagtcctgctctaaggaagagaga
aatattttccttctttgaaaaaaaaagatggtttaaggatttgcagctac
attatacacatacagactcacaggcagacacacagatatacagacagact
cacacacatgtttttaaaccaaagatctatagttgatatgttttgctatt
tgtttgctccacttttagacttctcttatttctatggaatgactagccaa
tggcatgtaatttttttttttaaagcggatgtgttatctaggtagagatt
ctttactggtgtagttattaaaggaaaaatgtcttcttgagttatccagt
agactttggttcaccagagagaacttctctggctctcaggtgggttgagc
accctggctggcttgtccagagtcgtcgtgcttgtctcttcccagttgtg
gtgggtactcactgtgttctttgggtgctgcgtagggagatgctggcaac
agaggcaaaagagttctgtgtgattctccccgctctcattcggtggtgct
tagagccattgtggctatgtggatggcttccagttccaagtcactctagg
aggcaggcaccggcccaggtctttacttatggcagattcttagccatcca
tctgcctgctcatcttctaaaacagtcctgccattgactaaagaaggcct
tgcagttcctagtgagagcttcttcagctcactggacctgttctcagcag
agaacctaggctgtcattttatgccactgtatttgactgaaatgactaac
aggctgggtgtgcagaaaaagaagagaaactgtaacttgtcttttcttca
agatccattggctctacgctcttcattgtagctcttggaagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_27485481_27486667
seq2: B6Ng01-300N03.b_49_1239

seq1  GAATTCTTCTAGACCTATCTAACTGTCTGTCTGTCTATCTATCTACTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAGACCTATCTAACTGTCTGTCTGTCTATCTATCTACTACC  50

seq1  TATCCACTACCTATATGTCTAGCTATCCTTAGATATAGATTTGTAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTACCTATATGTCTAGCTATCCTTAGATATAGATTTGTAATAAT  100

seq1  GAGCCTTTATAAGAACCTCTCTCCCTCATTCACCTAGACACACATCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTATAAGAACCTCTCTCCCTCATTCACCTAGACACACATCTGTA  150

seq1  CATGTGCACATGCACGTGTATATACCTGCAGCACTATCCTAATAACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCACATGCACGTGTATATACCTGCAGCACTATCCTAATAACACAG  200

seq1  TTGGGGAGATATTTGCTAGAAGTCATGCAGCTTTCCACCCAGATGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGATATTTGCTAGAAGTCATGCAGCTTTCCACCCAGATGGCATT  250

seq1  AAGACAACAAGACAACCTATAAAATGCTATTACAAATGTTAGCTACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACAAGACAACCTATAAAATGCTATTACAAATGTTAGCTACATTT  300

seq1  AAAAAGCAAAGCAAAACAAAACCATTTGACAGGTTGGGACCTCGGAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAAGCAAAACAAAACCATTTGACAGGTTGGGACCTCGGAGCTG  350

seq1  GAGAAGGGAGTAAAGGCAGCCGCTGCTACACAAATTCTCAACCTAGGCAT  400
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGAAGGGAGTAAAGGCAGCCGCTGCTACACAAATACTCAACCTAGGCAT  400

seq1  GGAGATTTGTCCATCCTGTTCTGCTCAGGCGCCATCACATGTCTCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTGTCCATCCTGTTCTGCTCAGGCGCCATCACATGTCTCTGTGT  450

seq1  TCTAGTTTGCTTTCTGTTGCTGTGATGGAGATCATGGACAGAAGCCGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTGCTTTCTGTTGCTGTGATGGAGATCATGGACAGAAGCCGCTT  500

seq1  GGGGAGGAAAGGGTTAATTTCATCTCACAACTCCAGATTGTAGTCCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAAAGGGTTAATTTCATCTCACAACTCCAGATTGTAGTCCATCA  550

seq1  CTGAGCAAGCCAAGGCAGGAGCTGGAGGCAGGAACCAAGCAGACTATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAAGCCAAGGCAGGAGCTGGAGGCAGGAACCAAGCAGACTATGAA  600

seq1  GGCACACTAGTTATTGACCTACTTCCTGTGACTTGTTCAGCCCACTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTAGTTATTGACCTACTTCCTGTGACTTGTTCAGCCCACTTTCT  650

seq1  TATACAACCTAGGCCAACCTGTCTAGGAGTGGAACTGTATAATGAGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACCTAGGCCAACCTGTCTAGGAGTGGAACTGTATAATGAGCCAA  700

seq1  ACCGTTCTGTATCAGTCATCAATCAAACATTCTCCCGCCCCCACCCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTCTGTATCAGTCATCAATCAAACATTCTCCCGCCCCCACCCCCAC  750

seq1  AGGCTTGCCTACAGCATATTCTAATAGAGCTATTTCCTCATTTGAGACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCCTACAGCATATTCTAATAGAGCTATTTCCTCATTTGAGACTC  800

seq1  TCTCTTGTAAGATGAACCTTAGCTTGTGTCAAGGTGACAGAAATCTAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTAAGATGAACCTTAGCTTGTGTCAAGGTGACAGAAATCTAACC  850

seq1  GGCAGTCTGTCGGTCTACTTGGCCA-TTGAGGTAAGACGTAAAGTTCTTA  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCAGTCTGTCGGTCTACTTGGCCATTTGAGGTAAGACGTAAAGTTCTTA  900

seq1  CACAGATGCTG-TTGTAAGCGAGCATCACCCTCCCCACCTGCTGCTGG--  946
      ||||||||||| ||||||||||||||||||||||||||||||||||||  
seq2  CACAGATGCTGTTTGTAAGCGAGCATCACCCTCCCCACCTGCTGCTGGGC  950

seq1  CTGAGCTGCGGGTTGCCTG-TTTTAGGACCTTCTGCCTAGCCTCCTTCAG  995
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGAGCTGCGGGTTGCCTGTTTTTAGGACCTTCTGCCTAGCCTCCTTCAG  1000

seq1  GCACACAAAACCAGCTCAGATCCAGG-AGACCACATTCTTTCAGAGCCCT  1044
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCACACAAAACCAGCTCAGATCCAGGAAGACCACATTCTTTCAGAGCCCT  1050

seq1  GATCTGCTCTTGACCCAATGACGTCAGTCTCTCAGAACCACCTTGGAACC  1094
      |||||||||||||||| |||||||||||||||||| ||||||| ||||||
seq2  GATCTGCTCTTGACCCTATGACGTCAGTCTCTCAG-ACCACCTGGGAACC  1099

seq1  TTAGCTCTAATCTAG-AGCTAATTTAGGGATCAAGGGTGCTCCGGGGGCT  1143
      |||||||| |||||| |||||| | |||||   |||||||| || |  ||
seq2  TTAGCTCT-ATCTAGAAGCTAAGTAAGGGAATCAGGGTGCTTCGAGACCT  1148

seq1  C-TAGTGTCCTCCCCTCTTGTTAGTCAGTCAGC-TTCCAGCCACAG  1187
      | |||||||||  |||| ||||||||||||||| |||||| |||||
seq2  CTTAGTGTCCT-ACCTC-TGTTAGTCAGTCAGCTTTCCAG-CACAG  1191


seq1: chr15_27607457_27608555
seq2: B6Ng01-300N03.g_69_1162 (reverse)

seq1  CTGCTTTCAAGAGCTACATAGAAAGAACCGTAGAGCCATGGGAATCTTGG  50
      |||||| |||||||||||  |||   | ||||||||||  || ||||| |
seq2  CTGCTTCCAAGAGCTACAATGAA--GAGCGTAGAGCCAATGG-ATCTT-G  46

seq1  AAGAAAAGACAAAGTTTTACAGTTTCTC-TCTTTTCTTGCACACCCAGCC  99
      ||||||||||||    |||||||||||| ||||||  |||||||||||||
seq2  AAGAAAAGACAA---GTTACAGTTTCTCTTCTTTTTCTGCACACCCAGCC  93

seq1  TGTAAGTCATCTCAGTC-AATACAGTGGCATAAAAATGACAGCCTAGGTT  148
      ||| |||||| |||||| ||||||||||||| ||||||||||||||||||
seq2  TGTTAGTCATTTCAGTCAAATACAGTGGCAT-AAAATGACAGCCTAGGTT  142

seq1  CTCTGCTGAGAACAGGTCCAGTGAGCTGAAGAAGCTCTCACTAGGAACTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGAGAACAGGTCCAGTGAGCTGAAGAAGCTCTCACTAGGAACTG  192

seq1  CAAGGCC-TCCTTAGTCAATGGCAGGACTGTTTTAGAAGATGAGCAGGCA  247
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTTCTTTAGTCAATGGCAGGACTGTTTTAGAAGATGAGCAGGCA  242

seq1  GATGGATGGCTAAGAATCTGCCATAAGTAAAGACCTGGGCCGGTGCCTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGGCTAAGAATCTGCCATAAGTAAAGACCTGGGCCGGTGCCTGC  292

seq1  CTCCTAGAGTGACTTGGAACTGGAAGCCATCCACATAGCCACAATGGCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGAGTGACTTGGAACTGGAAGCCATCCACATAGCCACAATGGCTC  342

seq1  TAAGCACCACCGAATGAGAGCGGGGAGAATCACACAGAACTCTTTTGCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCACCGAATGAGAGCGGGGAGAATCACACAGAACTCTTTTGCCT  392

seq1  CTGTTGCCAGCATCTCCCTACGCAGCACCCAAAGAACACAGTGAGTACCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCAGCATCTCCCTACGCAGCACCCAAAGAACACAGTGAGTACCC  442

seq1  ACCACAACTGGGAAGAGACAAGCACGACGACTCTGGACAAGCCAGCCAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAACTGGGAAGAGACAAGCACGACGACTCTGGACAAGCCAGCCAGG  492

seq1  GTGCTCAACCCACCTGAGAGCCAGAGAAGTTCTCTCTGGTGAACCAAAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAACCCACCTGAGAGCCAGAGAAGTTCTCTCTGGTGAACCAAAGT  542

seq1  CTACTGGATAACTCAAGAAGACATTTTTCCTTTAATAACTACACCAGTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGATAACTCAAGAAGACATTTTTCCTTTAATAACTACACCAGTAA  592

seq1  AGAATCTCTACCTAGATAACACATCCGCTTTAAAAAAAAAAATTACATGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTACCTAGATAACACATCCGCTTTAAAAAAAAAAATTACATGC  642

seq1  CATTGGCTAGTCATTCCATAGAAATAAGAGAAGTCTAAAAGTGGAGCAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTAGTCATTCCATAGAAATAAGAGAAGTCTAAAAGTGGAGCAAA  692

seq1  CAAATAGCAAAACATATCAACTATAGATCTTTGGTTTAAAAACATGTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCAAAACATATCAACTATAGATCTTTGGTTTAAAAACATGTGTG  742

seq1  TGAGTCTGTCTGTATATCTGTGTGTCTGCCTGTGAGTCTGTATGTGTATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGTCTGTATATCTGTGTGTCTGCCTGTGAGTCTGTATGTGTATA  792

seq1  ATGTAGCTGCAAATCCTTAAACCATCTTTTTTTTTCAAAGAAGGAAAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTGCAAATCCTTAAACCATCTTTTTTTTTCAAAGAAGGAAAATA  842

seq1  TTTCTCTCTTCCTTAGAGCAGGACTTGGGAACAGCTACTTGCACCCCTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTTCCTTAGAGCAGGACTTGGGAACAGCTACTTGCACCCCTCA  892

seq1  GGACAGTTACTAACTGCCTGAGCCCCCTGCTTACCAAGCAGCTCCCCAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTACTAACTGCCTGAGCCCCCTGCTTACCAAGCAGCTCCCCAAG  942

seq1  GCCAGAGGAGCTCCAGTATAAACGCCCATCCCCCGTAGTCCCTGTGGACG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGAGCTCCAGTATAAACGCCCATCCCCCGTAGTCCCTGTGGACG  992

seq1  TAAAGTTCACACACACTGTGGGCATCACTCCTTTCTCGGCTGATACTAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCACACACACTGTGGGCATCACTCCTTTCTCGGCTGATACTAAC  1042

seq1  TGTTCCAGTTCGCCTCTCTCCCTGGGCGCAGGCATGCTCACCTTCTGAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGTTCGCCTCTCTCCCTGGGCGCAGGCATGCTCACCTTCTGAAT  1092

seq1  TC  1099
      ||
seq2  TC  1094


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