BAC Information

Click to search

BAC

Clone NameB6Ng01-301G17
Chromosome15 (Build37)
Map Location 75,214,891 - 75,386,280
singlet/doubletdoublet
Overlap gene9030619P08Rik
Upstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107
Downstream geneLy6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301G17.bB6Ng01-301G17.g
ACCGA095736GA095737
length1,167999
definitionB6Ng01-301G17.b B6Ng01-301G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,214,891 - 75,216,055)(75,385,280 - 75,386,280)
sequence
gaattctgccaatttgtaagtatatctatcctaattatacattctggaac
tggagaaatgatcacagcatgtgtttgaggacctactggacctactgtga
gtcaggcatcagtcaaaactccattaattaactgtcctacataagcccct
acttcaactggagggctaccccatctcctttatttctcagaccagttttc
cctgtgtagttctggttgtcccggaattcattctgtagaccaggttggcc
ttaaactcacagagatctgcctgtctgtgcctctgagtgttgggattaaa
agtgtgacccaccagactagctaaaaggtttaggaataaactccagagtc
attgcaaagtttaggaaaacagtggagcagtaagggcaaatcttgaaaag
aaaaactaaaaacaaaacaagcaaacaagaaaacagtgaagtcttcacat
aattcagggaggttaggaaaggtgaccaaaacaagttacagccatgggat
gtggagataaggttccaggaaacagagccagaattatttttaacaataca
acataaaggattcctgccttcaaaatggagtccagtgtgtttctcctttt
ctcctcaacttaagtgtccctgtcaaattctaggctatcttcaataatgt
tgttgagtggcagttgagcgtttccttgaaaaaatacaaactttggaaat
aaagtttcagaagattgcaacaatgggctgttaatcattggtggctctgg
gagcatcagggaactgagttgactactggaatttccacgtggcctcaaca
agtatagtaaaactaacagagaagccaatcagaaaccgacacatgtaact
tccctggagcccaccaataaaattttagtttaccaagaccttgttaaaat
tcctctagtttccatacaagacttgtgcctttcatctggctttccatttt
aataagtggctttacaccctacatgcagacttcttggtttctgaaacact
cttacctgtgttgtattgtgagtgtagtctcagtgcagtaatttcagacc
ttaaaccacagtgaatctagcattttttattcggaaacagttgtaccctt
ggaagaatgcatggctgaattatgatacagtacaattataccttgaagcc
aattgtgagagaatgcc
gaattctgcagtctggtgtggattttcctttcaggactagcaggaaggac
aattctgcctggtaaggaaaaccagggtccctctggatcagctccatctt
ctgttatgtcttcttgttccatcaaatgattgggaactaaccagggcccc
tggggctggagagtaaagggggggactttctgatctccttgttccccagt
gccccttatacttggtcttttggtggctctttcagtggataactacaatc
tgggtcaggagttcagcagttggagccttgttggaggaagtgggtcactg
gaggaaggacatgagagtttatagcttagcccctcttcctgtccactctc
ttcttcttctagaccattcacctcatactctggctgccacacatcccctg
ccacgatggactgtatcccttcaaactgcaagccaaaatgaacactgaag
ccaggtcttgtcgcgtatttggtcagaaggagaggcatagttaatactgc
agcccccttcagctgcaaatgaagagaaggatgtgttgtgagtgggccct
ggggtgccaagagtcctctactcttttggcttgcagcccatgagtgcagg
gtatgcaatgaagacaacctctaggagagagagtttacttcagcttgccg
ctccactggaagggctcataatagcagtgaaggcaggacagcatagagct
agagcaggaagctaagaacccacatcttttaaccacagacacagaagcag
aaaaagccaactggataccagcagagggctatgaactctcaaagcccccc
cacccccccccagtgatgcccttcttccagcaaggcgtcaccacctcccc
taccagcactgccaaatgtggaccaaaagttaattccctgagcccataga
ggacattttcttattccagttaaccacagtggaaggcataccttgaagct
gtgtagtgtagtctatgacagcctccctggtcgggagagcttaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75214891_75216055
seq2: B6Ng01-301G17.b_47_1213

seq1  GAATTCTGCCAATTTGTAAGTATATCTATCCTAATTATACATTCTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCAATTTGTAAGTATATCTATCCTAATTATACATTCTGGAAC  50

seq1  TGGAGAAATGATCACAGCATGTGTTTGAGGACCTACTGGACCTACTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATGATCACAGCATGTGTTTGAGGACCTACTGGACCTACTGTGA  100

seq1  GTCAGGCATCAGTCAAAACTCCATTAATTAACTGTCCTACATAAGCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCATCAGTCAAAACTCCATTAATTAACTGTCCTACATAAGCCCCT  150

seq1  ACTTCAACTGGAGGGCTACCCCATCTCCTTTATTTCTCAGACCAGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACTGGAGGGCTACCCCATCTCCTTTATTTCTCAGACCAGTTTTC  200

seq1  CCTGTGTAGTTCTGGTTGTCCCGGAATTCATTCTGTAGACCAGGTTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTAGTTCTGGTTGTCCCGGAATTCATTCTGTAGACCAGGTTGGCC  250

seq1  TTAAACTCACAGAGATCTGCCTGTCTGTGCCTCTGAGTGTTGGGATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCACAGAGATCTGCCTGTCTGTGCCTCTGAGTGTTGGGATTAAA  300

seq1  AGTGTGACCCACCAGACTAGCTAAAAGGTTTAGGAATAAACTCCAGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACCCACCAGACTAGCTAAAAGGTTTAGGAATAAACTCCAGAGTC  350

seq1  ATTGCAAAGTTTAGGAAAACAGTGGAGCAGTAAGGGCAAATCTTGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAAGTTTAGGAAAACAGTGGAGCAGTAAGGGCAAATCTTGAAAAG  400

seq1  AAAAACTAAAAACAAAACAAGCAAACAAGAAAACAGTGAAGTCTTCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAAAAACAAAACAAGCAAACAAGAAAACAGTGAAGTCTTCACAT  450

seq1  AATTCAGGGAGGTTAGGAAAGGTGACCAAAACAAGTTACAGCCATGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGGAGGTTAGGAAAGGTGACCAAAACAAGTTACAGCCATGGGAT  500

seq1  GTGGAGATAAGGTTCCAGGAAACAGAGCCAGAATTATTTTTAACAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATAAGGTTCCAGGAAACAGAGCCAGAATTATTTTTAACAATACA  550

seq1  ACATAAAGGATTCCTGCCTTCAAAATGGAGTCCAGTGTGTTTCTCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGGATTCCTGCCTTCAAAATGGAGTCCAGTGTGTTTCTCCTTTT  600

seq1  CTCCTCAACTTAAGTGTCCCTGTCAAATTCTAGGCTATCTTCAATAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAACTTAAGTGTCCCTGTCAAATTCTAGGCTATCTTCAATAATGT  650

seq1  TGTTGAGTGGCAGTTGAGCGTTTCCTTGAAAAAATACAAACTTTGGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTGGCAGTTGAGCGTTTCCTTGAAAAAATACAAACTTTGGAAAT  700

seq1  AAAGTTTCAGAAGATTGCAACAATGGGCTGTTAATCATTGGTGGCTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCAGAAGATTGCAACAATGGGCTGTTAATCATTGGTGGCTCTGG  750

seq1  GAGCATCAGGGAACTGAGTTGACTACTGGAATTTCCACGTGGCCTCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCAGGGAACTGAGTTGACTACTGGAATTTCCACGTGGCCTCAACA  800

seq1  AGTATAGTAAAACTAACAGAGAAGCCAATCAGAAACCGACACATGTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGTAAAACTAACAGAGAAGCCAATCAGAAACCGACACATGTAACT  850

seq1  TCCCTGGAGCCCACCAATAAAATTTTAGTTTACCAAGACCTTGTTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAGCCCACCAATAAAATTTTAGTTTACCAAGACCTTGTTAAAAT  900

seq1  TCCTCTAGTTTTCCATACAAGACTTGTGCCTTTCATCTGGCTTTCCATTT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAG-TTTCCATACAAGACTTGTGCCTTTCATCTGGCTTTCCATTT  949

seq1  TAATAAGTGGCTTTACACCCTACATGCAGACTTCTTGGTTTCTTGAAACA  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAATAAGTGGCTTTACACCCTACATGCAGACTTCTTGGTTTC-TGAAACA  998

seq1  CTCTTACCTGTTGTGTA-TGTGAGTGTTAGTCTCAGTGCAGTAATTTCAG  1049
      |||||||||||  |||| |||||||| |||||||||||||||||||||||
seq2  CTCTTACCTGTGTTGTATTGTGAGTG-TAGTCTCAGTGCAGTAATTTCAG  1047

seq1  ACCT---AACACAGTGATTCTAGCATTTTT--ATCG--AACAGTTGTTAA  1092
      ||||   | |||||||| ||||||||||||   |||  |||||||||  |
seq2  ACCTTAAACCACAGTGAATCTAGCATTTTTTATTCGGAAACAGTTGT--A  1095

seq1  CCCTTTGGAGAATGCAGGGGCTG-ATTATGATAACCAGTACAAATAATAC  1141
      ||||| | ||||||||  ||||| |||||||||  |||||||| ||   |
seq2  CCCTTGGAAGAATGCA-TGGCTGAATTATGATA--CAGTACAATTATACC  1142

seq1  TAGAGGGCCAAT--TGAGAGAATGCC  1165
      | ||  ||||||  ||||||||||||
seq2  TTGA-AGCCAATTGTGAGAGAATGCC  1167

seq1: chr15_75385280_75386280
seq2: B6Ng01-301G17.g_69_1067 (reverse)

seq1  TTTTTTAAAGCTCTCCCGACCCGGGGAGCTGTCAAAGACTTAACACCTAC  50
      |||||| |||||||||||||| |||  ||||||| |||||  ||| ||||
seq2  TTTTTTTAAGCTCTCCCGACCAGGGAGGCTGTCATAGACT--ACA-CTAC  47

seq1  ACAGCCTTCAGGTATGCCTTTCCCACTGTGG-TAACTGGAATAAG-AAAT  98
      ||||| |  |||||||||||  ||||||||| ||||||||||||| ||||
seq2  ACAGCTTCAAGGTATGCCTT--CCACTGTGGTTAACTGGAATAAGAAAAT  95

seq1  GTCCTCTATGGGCTCA-GGAATTAACTTTTGGTCCACATTTGGCAGTGCT  147
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCCTCTATGGGCTCAGGGAATTAACTTTTGGTCCACATTTGGCAGTGCT  145

seq1  GGTAGGGGAGGTGGTGACGCCTTGCTGGAAGAAGGGCATCACTGGGGGGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGAGGTGGTGACGCCTTGCTGGAAGAAGGGCATCACTGGGGGGG  195

seq1  GGTGGGGGGGCTTTGAGAGTTCATAGCCCTCTGCTGGTATCCAGTTGGCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGGGCTTTGAGAGTTCATAGCCCTCTGCTGGTATCCAGTTGGCT  245

seq1  TTTTCTGCTTCTGTGTCTGTGGTTAAAAGATGTGGGTTCTTAGCTTCCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCTTCTGTGTCTGTGGTTAAAAGATGTGGGTTCTTAGCTTCCTG  295

seq1  CTCTAGCTCTATGCTGTCCTGCCTTCACTGCTATTATGAGCCCTTCCAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTCTATGCTGTCCTGCCTTCACTGCTATTATGAGCCCTTCCAGT  345

seq1  GGAGCGGCAAGCTGAAGTAAACTCTCTCTCCTAGAGGTTGTCTTCATTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGCAAGCTGAAGTAAACTCTCTCTCCTAGAGGTTGTCTTCATTGC  395

seq1  ATACCCTGCACTCATGGGCTGCAAGCCAAAAGAGTAGAGGACTCTTGGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGCACTCATGGGCTGCAAGCCAAAAGAGTAGAGGACTCTTGGCA  445

seq1  CCCCAGGGCCCACTCACAACACATCCTTCTCTTCATTTGCAGCTGAAGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGCCCACTCACAACACATCCTTCTCTTCATTTGCAGCTGAAGGG  495

seq1  GGCTGCAGTATTAACTATGCCTCTCCTTCTGACCAAATACGCGACAAGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGTATTAACTATGCCTCTCCTTCTGACCAAATACGCGACAAGAC  545

seq1  CTGGCTTCAGTGTTCATTTTGGCTTGCAGTTTGAAGGGATACAGTCCATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCAGTGTTCATTTTGGCTTGCAGTTTGAAGGGATACAGTCCATC  595

seq1  GTGGCAGGGGATGTGTGGCAGCCAGAGTATGAGGTGAATGGTCTAGAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGGGATGTGTGGCAGCCAGAGTATGAGGTGAATGGTCTAGAAGA  645

seq1  AGAAGAGAGTGGACAGGAAGAGGGGCTAAGCTATAAACTCTCATGTCCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGTGGACAGGAAGAGGGGCTAAGCTATAAACTCTCATGTCCTT  695

seq1  CCTCCAGTGACCCACTTCCTCCAACAAGGCTCCAACTGCTGAACTCCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTGACCCACTTCCTCCAACAAGGCTCCAACTGCTGAACTCCTGA  745

seq1  CCCAGATTGTAGTTATCCACTGAAAGAGCCACCAAAAGACCAAGTATAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTGTAGTTATCCACTGAAAGAGCCACCAAAAGACCAAGTATAAG  795

seq1  GGGCACTGGGGAACAAGGAGATCAGAAAGTCCCCCCCTTTACTCTCCAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGGGGAACAAGGAGATCAGAAAGTCCCCCCCTTTACTCTCCAGC  845

seq1  CCCAGGGGCCCTGGTTAGTTCCCAATCATTTGATGGAACAAGAAGACATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGCCCTGGTTAGTTCCCAATCATTTGATGGAACAAGAAGACATA  895

seq1  ACAGAAGATGGAGCTGATCCAGAGGGACCCTGGTTTTCCTTACCAGGCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGATGGAGCTGATCCAGAGGGACCCTGGTTTTCCTTACCAGGCAG  945

seq1  AATTGTCCTTCCTGCTAGTCCTGAAAGGAAAATCCACACCAGACTGCAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCCTTCCTGCTAGTCCTGAAAGGAAAATCCACACCAGACTGCAGA  995

seq1  ATTC  1001
      ||||
seq2  ATTC  999