BAC Information

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BAC

Clone NameB6Ng01-301O03
Chromosome15 (Build37)
Map Location 49,192,524 - 49,327,234
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301O03.bB6Ng01-301O03.g
ACCGA096079GA096080
length1,102982
definitionB6Ng01-301O03.b B6Ng01-301O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,326,127 - 49,327,234)(49,192,524 - 49,193,496)
sequence
gaattcatcatattatattagatatttctatggagttgtctttaaaaagt
atattctatgacctcttttataattcttggtgtgagttcaaaatattctt
attttatcagaagccatgttatttgcaatttaaagctctctctcaagact
agtctctcatttttacatctttttctggtaatattaatattaccttcttt
tatatgtagtgagcatagagtatatctcccaatatgtcctgtactttgac
aacattttctccctccctaagttattacatataatattttaaacatactt
tatgctctttaagatgttttatacttttgataactacatatctcttcttt
caagtcactttagtcttgttatttctgattattggcttatataaatggcc
tagtatcttgattgttggggactttgaactagtcaaatacaagtagtata
attttctctttattcttttcatgcaaacattgtcgaaccacagctttgtc
ttattgcttctttattcatgaggattctatattccagtgttgtaaatttc
ttcttcccaaatttgttacatatttttagattagttttattatttgtact
ttaaaagatgttttcacatgacattttcaggaccacccaaagaccacagc
caccaattaattgcttcataaagatggctaacaatgtacacatcttctct
tatgtgaaatatctccatttattactaataaatcacagataagttttatt
tatattatatttgcaaggtttgtgtaccaatataaaagtgaaaatcaatc
tctgaatttaagtgaatgaaaactgattatttgtgatatccctaatctca
aattgtaatcacatagacataatttgtgtcctgtataacatttttaaatg
atcttaatttatgggagaaactttgtacagctgatgttagatacataaat
gtgtctgctgtcactgcttctacatgaaaccatgccacaaatactatgaa
gtattgttgttgttagcaaacttgcttatttaatcttacaaaatatcagt
taatttaaagttctatgcatcactcatggtagtaggtaatcttataaact
gg

gaattcaatttacttcaagattaagtcatgtaatattgtctgcattattt
ttgttcatgagaataaaatccatatttgaaacctactatgtctgtggaat
actgaacaaaagataattgtgagagtttctctactagttaatatttatcc
atcatttgacagatttgaaaaaccagaaacatcatataaagtggagaaaa
aatttaaacacccaaagaactaatgaaaattttaaattccctccaataat
atctttgcaactttacttagacttggactgaaaaagaagaaaaacattaa
atatacaagtataacatgcccccttctagaagatttctagaatcttacaa
cattattgatatattcaagttgttggaagtgtagcttagatataaccagg
aaatgtgacagtaagaaatactaatattgtattctatttaaaacctcaca
agtctatttctaaagaaatatcgcccttccgctcgactcgagccctgggc
taccttgccagcagagtcttgcccaacacccgcaagggcccagacgggac
tccccacgggatcataagacctctggtgagtagaacatagcacctgcccc
aatccaatctcgcggaacctgagactgcggtacatagggaagcaggctac
ccgggcttgatctggggcacaaaccccttccgctccactcgagccccggg
ctaccttgccagcggagtcgcctgacacccgcaagggcccacacaggatt
ccacacgagatcctaagacctctagtgagtggaacacaacttctgccagg
agtctggttcgaacaccagatatctgggtacctgccctgcaagaagagag
cttgcctgcagagaatactctgcccactgaaactaaggagagtgctaccc
tccaggtctgcttatagaggctaacagagtcactgaagaacagctcttaa
cagtgacactaaaacagctagcttcagagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_49326127_49327234
seq2: B6Ng01-301O03.b_47_1148 (reverse)

seq1  CCAGTTTTATAAGATTAACTACTACAATGAAGTGAATGCATAGAATTTTA  50
      |||| |||||||||||| ||||||| ||| |||| |||||||||| ||||
seq2  CCAG-TTTATAAGATTACCTACTACCATG-AGTG-ATGCATAGAACTTTA  47

seq1  AATTAACTGATATTTTGTAAGATTAAAATAAGCAAGTTTGCTAAC-ACAA  99
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  AATTAACTGATATTTTGTAAGATT-AAATAAGCAAGTTTGCTAACAACAA  96

seq1  CAATACTTCATAGTATTTGTGGGCATGGTTTCATGTAGAAGCAGTGACAG  149
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAATACTTCATAGTATTTGT-GGCATGGTTTCATGTAGAAGCAGTGACAG  145

seq1  CAAGACACATTTATGTATCTAACATCAGCTGTACAAAGTTTTCTCCCATA  199
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  C-AGACACATTTATGTATCTAACATCAGCTGTACAAAG-TTTCTCCCATA  193

seq1  AATTAAGATCATTTAAAAATGTTATACAGGACACAAATTATGTCTATGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATCATTTAAAAATGTTATACAGGACACAAATTATGTCTATGTG  243

seq1  ATTACAATTTGAGATTAGGGATATCACAAATAATCAGTTTTCATTCACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATTTGAGATTAGGGATATCACAAATAATCAGTTTTCATTCACTT  293

seq1  AAATTCAGAGATTGATTTTCACTTTTATATTGGTACACAAACCTTGCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGAGATTGATTTTCACTTTTATATTGGTACACAAACCTTGCAAA  343

seq1  TATAATATAAATAAAACTTATCTGTGATTTATTAGTAATAAATGGAGATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATAAATAAAACTTATCTGTGATTTATTAGTAATAAATGGAGATA  393

seq1  TTTCACATAAGAGAAGATGTGTACATTGTTAGCCATCTTTATGAAGCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATAAGAGAAGATGTGTACATTGTTAGCCATCTTTATGAAGCAAT  443

seq1  TAATTGGTGGCTGTGGTCTTTGGGTGGTCCTGAAAATGTCATGTGAAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTGGCTGTGGTCTTTGGGTGGTCCTGAAAATGTCATGTGAAAAC  493

seq1  ATCTTTTAAAGTACAAATAATAAAACTAATCTAAAAATATGTAACAAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAAAGTACAAATAATAAAACTAATCTAAAAATATGTAACAAATT  543

seq1  TGGGAAGAAGAAATTTACAACACTGGAATATAGAATCCTCATGAATAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAAGAAATTTACAACACTGGAATATAGAATCCTCATGAATAAAG  593

seq1  AAGCAATAAGACAAAGCTGTGGTTCGACAATGTTTGCATGAAAAGAATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAAGACAAAGCTGTGGTTCGACAATGTTTGCATGAAAAGAATAA  643

seq1  AGAGAAAATTATACTACTTGTATTTGACTAGTTCAAAGTCCCCAACAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATTATACTACTTGTATTTGACTAGTTCAAAGTCCCCAACAATC  693

seq1  AAGATACTAGGCCATTTATATAAGCCAATAATCAGAAATAACAAGACTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTAGGCCATTTATATAAGCCAATAATCAGAAATAACAAGACTAA  743

seq1  AGTGACTTGAAAGAAGAGATATGTAGTTATCAAAAGTATAAAACATCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTGAAAGAAGAGATATGTAGTTATCAAAAGTATAAAACATCTTA  793

seq1  AAGAGCATAAAGTATGTTTAAAATATTATATGTAATAACTTAGGGAGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATAAAGTATGTTTAAAATATTATATGTAATAACTTAGGGAGGGA  843

seq1  GAAAATGTTGTCAAAGTACAGGACATATTGGGAGATATACTCTATGCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTGTCAAAGTACAGGACATATTGGGAGATATACTCTATGCTCA  893

seq1  CTACATATAAAAGAAGGTAATATTAATATTACCAGAAAAAGATGTAAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATAAAAGAAGGTAATATTAATATTACCAGAAAAAGATGTAAAAA  943

seq1  TGAGAGACTAGTCTTGAGAGAGAGCTTTAAATTGCAAATAACATGGCTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACTAGTCTTGAGAGAGAGCTTTAAATTGCAAATAACATGGCTTC  993

seq1  TGATAAAATAAGAATATTTTGAACTCACACCAAGAATTATAAAAGAGGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAATAAGAATATTTTGAACTCACACCAAGAATTATAAAAGAGGTC  1043

seq1  ATAGAATATACTTTTTAAAGACAACTCCATAGAAATATCTAATATAATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATATACTTTTTAAAGACAACTCCATAGAAATATCTAATATAATAT  1093

seq1  GATGAATTC  1108
      |||||||||
seq2  GATGAATTC  1102


seq1: chr15_49192524_49193496
seq2: B6Ng01-301O03.g_64_1033

seq1  GAATTCAATTTACTTCAAGATTAAGTCATGTAATATTGTCTGCATTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTACTTCAAGATTAAGTCATGTAATATTGTCTGCATTATTT  50

seq1  TTGTTCATGAGAATAAAATCCATATTTGAAACCTACTATGTCTGTGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATGAGAATAAAATCCATATTTGAAACCTACTATGTCTGTGGAAT  100

seq1  ACTGAACAAAAGATAATTGTGAGAGTTTCTCTACTAGTTAATATTTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACAAAAGATAATTGTGAGAGTTTCTCTACTAGTTAATATTTATCC  150

seq1  ATCATTTGACAGATTTGAAAAACCAGAAACATCATATAAAGTGGAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGACAGATTTGAAAAACCAGAAACATCATATAAAGTGGAGAAAA  200

seq1  AATTTAAACACCCAAAGAACTAATGAAAATTTTAAATTCCCTCCAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAACACCCAAAGAACTAATGAAAATTTTAAATTCCCTCCAATAAT  250

seq1  ATCTTTGCAACTTTACTTAGACTTGGACTGAAAAAGAAGAAAAACATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCAACTTTACTTAGACTTGGACTGAAAAAGAAGAAAAACATTAA  300

seq1  ATATACAAGTATAACATGCCCCCTTCTAGAAGATTTCTAGAATCTTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAGTATAACATGCCCCCTTCTAGAAGATTTCTAGAATCTTACAA  350

seq1  CATTATTGATATATTCAAGTTGTTGGAAGTGTAGCTTAGATATAACCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGATATATTCAAGTTGTTGGAAGTGTAGCTTAGATATAACCAGG  400

seq1  AAATGTGACAGTAAGAAATACTAATATTGTATTCTATTTAAAACCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGACAGTAAGAAATACTAATATTGTATTCTATTTAAAACCTCACA  450

seq1  AGTCTATTTCTAAAGAAATATCGCCCTTCCGCTCGACTCGAGCCCTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTTCTAAAGAAATATCGCCCTTCCGCTCGACTCGAGCCCTGGGC  500

seq1  TACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCAGACGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCAGACGGGAC  550

seq1  TCCCCACGGGATCATAAGACCTCTGGTGAGTAGAACATAGCACCTGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACGGGATCATAAGACCTCTGGTGAGTAGAACATAGCACCTGCCCC  600

seq1  AATCCAATCTCGCGGAACCTGAGACTGCGGTACATAGGGAAGCAGGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAATCTCGCGGAACCTGAGACTGCGGTACATAGGGAAGCAGGCTAC  650

seq1  CCGGGCTTGATCTGGGGCACAAACCCCTTCCGCTCCACTCGAGCCCCGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCTTGATCTGGGGCACAAACCCCTTCCGCTCCACTCGAGCCCCGGG  700

seq1  CTACCTTGCCAGCGGAGTCGCCTGACACCCGCAAGGGCCCACACAGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGCCAGCGGAGTCGCCTGACACCCGCAAGGGCCCACACAGGATT  750

seq1  CCACACGAGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGAGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGG  800

seq1  AGTCTGGTTCGAACACCAGATATCTGGGTACCTGCCCTGCAAGAAGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGTTCGAACACCAGATATCTGGGTACCTGCCCTGCAAGAAGAGAG  850

seq1  CTTGCCTGCAGAGAATACTCTGCCCACTGAAACTAAGGAGAGTGCTACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGCAGAGAATACTCTGCCCACTGAAACTAAGGAGAGTGCTACCC  900

seq1  TCCAGGTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCTT  950
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  TCCAGGTCTGCTTATAGAGGCTAACAGAGTCA-CTGAAGAAC-AGCTCTT  948

seq1  AACAGTGACAACTAAAACAGCTA  973
      ||||||||| |||||||||||||
seq2  AACAGTGAC-ACTAAAACAGCTA  970


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