BAC Information

Click to search

BAC

Clone NameB6Ng01-306G11
Chromosome15 (Build37)
Map Location 34,937,239 - 35,060,696
singlet/doubletdoublet
Overlap geneStk3
Upstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2
Downstream geneOsr2, Vps13b, EG666183, Cox6c, Rgs22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306G11.bB6Ng01-306G11.g
ACCGA099452GA099453
length636613
definitionB6Ng01-306G11.b B6Ng01-306G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,937,239 - 34,937,874)(35,060,084 - 35,060,696)
sequence
gaattcttttctatttaacagtaagaaacatcggaaaattatttgttagt
gtaagacacactgaggtacactgtagacatactgtgagagactcagtgag
gcacagtgtagatatacctacatgcatatggtgtggcatatttattagtt
gagagttctgaggcaattctgttaagaagaaaaagttccacaaacttgtt
tttctattataaatattaagttatttctttttgctttagaatccacgaat
tttttaaaaagcctcttggttttttagatacagagtttatttacagtagg
cataaaatacgtcactcaggtaaccttatcactagcatttataacatgta
ataatcttttcagggatcttggatttacatacattagagtggagccagaa
gtcaagggacaatgctgagttaagaagcacaaggaaaccactgggagata
aaacccacagcaagagctcacaaaacaagggacatgggagcacatagaag
acaaacaacaacaaacgcacgagagttaagtgcatgtgtcacaactccat
gttttcaatctttagacagtcctgagactcattagctttgggaatctgtg
aagaggaggaggagaaggaagaggaggaggaggagg
gaattctctagaacgtggaagagtttccactttaaagtcaagagtatatt
ttttgaatctttgatagaaacttaaaacatttccactaaaatcagggaca
agacaaggctgtccactcttttcctaactatttaatataatacttgaagt
tctagccagagaaataagacaactaaaggagatacaaaggggatacaaat
tagaaaagaagaagtcaaagtatctctatttgatgatgatatgatagtat
atgtaaatgatcccaagaattttaccagagaactcctacaactgataaac
accttcagcaaaggatgcaaagttaattaaaaaaaatcagaaaccttcct
ttatacaataataaaggggccaagaaagaaattaggaaaataacaccctt
tgcaatagccatgaataatataaaatatcttagtgtaactctatccaagc
agatgaaagatctgtatgagaatttctatatttaagttgagaacatgagg
tgttaaaaacctactagtatcatagacagataaaactatgctcatattgt
atttgtcatatcagtaaagtagaaaagtactgtgtgtgtgtgttaggtgt
gtgtgtgtgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_34937239_34937874
seq2: B6Ng01-306G11.b_44_679

seq1  GAATTCTTTTCTATTTAACAGTAAGAAACATCGGAAAATTATTTGTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTATTTAACAGTAAGAAACATCGGAAAATTATTTGTTAGT  50

seq1  GTAAGACACACTGAGGTACACTGTAGACATACTGTGAGAGACTCAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACACACTGAGGTACACTGTAGACATACTGTGAGAGACTCAGTGAG  100

seq1  GCACAGTGTAGATATACCTACATGCATATGGTGTGGCATATTTATTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGTAGATATACCTACATGCATATGGTGTGGCATATTTATTAGTT  150

seq1  GAGAGTTCTGAGGCAATTCTGTTAAGAAGAAAAAGTTCCACAAACTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCTGAGGCAATTCTGTTAAGAAGAAAAAGTTCCACAAACTTGTT  200

seq1  TTTCTATTATAAATATTAAGTTATTTCTTTTTGCTTTAGAATCCACGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTATAAATATTAAGTTATTTCTTTTTGCTTTAGAATCCACGAAT  250

seq1  TTTTTAAAAAGCCTCTTGGTTTTTTAGATACAGAGTTTATTTACAGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAGCCTCTTGGTTTTTTAGATACAGAGTTTATTTACAGTAGG  300

seq1  CATAAAATACGTCACTCAGGTAACCTTATCACTAGCATTTATAACATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATACGTCACTCAGGTAACCTTATCACTAGCATTTATAACATGTA  350

seq1  ATAATCTTTTCAGGGATCTTGGATTTACATACATTAGAGTGGAGCCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTTTCAGGGATCTTGGATTTACATACATTAGAGTGGAGCCAGAA  400

seq1  GTCAAGGGACAATGCTGAGTTAAGAAGCACAAGGAAACCACTGGGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGGACAATGCTGAGTTAAGAAGCACAAGGAAACCACTGGGAGATA  450

seq1  AAACCCACAGCAAGAGCTCACAAAACAAGGGACATGGGAGCACATAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACAGCAAGAGCTCACAAAACAAGGGACATGGGAGCACATAGAAG  500

seq1  ACAAACAACAACAAACGCACGAGAGTTAAGTGCATGTGTCACAACTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAACAACAAACGCACGAGAGTTAAGTGCATGTGTCACAACTCCAT  550

seq1  GTTTTCAATCTTTAGACAGTCCTGAGACTCATTAGCTTTGGGAATCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAATCTTTAGACAGTCCTGAGACTCATTAGCTTTGGGAATCTGTG  600

seq1  AAGAGGAGGAGGAGAAGGAAGAGGAGGAGGAGGAGG  636
      ||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGGAGGAGAAGGAAGAGGAGGAGGAGGAGG  636

seq1: chr15_35060084_35060696
seq2: B6Ng01-306G11.g_70_682 (reverse)

seq1  CTCACACACACACACACCTAACACACACACACAGTACTTTTCTACTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACACACACACCTAACACACACACACAGTACTTTTCTACTTTAC  50

seq1  TGATATGACAAATACAATATGAGCATAGTTTTATCTGTCTATGATACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGACAAATACAATATGAGCATAGTTTTATCTGTCTATGATACTAG  100

seq1  TAGGTTTTTAACACCTCATGTTCTCAACTTAAATATAGAAATTCTCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTTAACACCTCATGTTCTCAACTTAAATATAGAAATTCTCATAC  150

seq1  AGATCTTTCATCTGCTTGGATAGAGTTACACTAAGATATTTTATATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTCATCTGCTTGGATAGAGTTACACTAAGATATTTTATATTATT  200

seq1  CATGGCTATTGCAAAGGGTGTTATTTTCCTAATTTCTTTCTTGGCCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTATTGCAAAGGGTGTTATTTTCCTAATTTCTTTCTTGGCCCCTT  250

seq1  TATTATTGTATAAAGGAAGGTTTCTGATTTTTTTTAATTAACTTTGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTATAAAGGAAGGTTTCTGATTTTTTTTAATTAACTTTGCATC  300

seq1  CTTTGCTGAAGGTGTTTATCAGTTGTAGGAGTTCTCTGGTAAAATTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGAAGGTGTTTATCAGTTGTAGGAGTTCTCTGGTAAAATTCTTG  350

seq1  GGATCATTTACATATACTATCATATCATCATCAAATAGAGATACTTTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTTACATATACTATCATATCATCATCAAATAGAGATACTTTGAC  400

seq1  TTCTTCTTTTCTAATTTGTATCCCCTTTGTATCTCCTTTAGTTGTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTTCTAATTTGTATCCCCTTTGTATCTCCTTTAGTTGTCTTAT  450

seq1  TTCTCTGGCTAGAACTTCAAGTATTATATTAAATAGTTAGGAAAAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGCTAGAACTTCAAGTATTATATTAAATAGTTAGGAAAAGAGTG  500

seq1  GACAGCCTTGTCTTGTCCCTGATTTTAGTGGAAATGTTTTAAGTTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTTGTCTTGTCCCTGATTTTAGTGGAAATGTTTTAAGTTTCTAT  550

seq1  CAAAGATTCAAAAAATATACTCTTGACTTTAAAGTGGAAACTCTTCCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTCAAAAAATATACTCTTGACTTTAAAGTGGAAACTCTTCCACG  600

seq1  TTCTAGAGAATTC  613
      |||||||||||||
seq2  TTCTAGAGAATTC  613