BAC Information

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BAC

Clone NameB6Ng01-307L13
Chromosome15 (Build37)
Map Location 101,965,761 - 102,132,436
singlet/doubletdoublet
Overlap geneSpryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1
Upstream geneAcvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1
Downstream genePfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307L13.bB6Ng01-307L13.g
ACCGA100419GA100420
length1,084734
definitionB6Ng01-307L13.b B6Ng01-307L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,965,761 - 101,967,331)(102,131,703 - 102,132,436)
sequence
gaattcttcaacagcctgctctacatagtgtgtgccagggtagacagggc
tacacagtgaggccctgtctcaaacaaaagaaaaaacaacttagcagatc
ttaactccaagttgtaacagaattcagagggccgcagcccctaaagcagc
agcagtaccggagaaaaacatgggactctctcggtatttagacaaccagc
aaggccagtaaatgaatgaatgaataaaatcttccagagatccaaaagcg
ggaaaaccatgaagaaatattttcttcctgcctcccaaacacctggcact
gtgccctacacacagtaggtgcttagcaatcctgggctaagctgagttcg
atcccaatgtgcacattggggctcttctgcaggagctacagaccagcaca
tgccccacaagagcagacacctgcggcgcagcactgggatcccccagggc
cctgggccaggactcgaacccaggtagatgccggagccccagatctgaag
gcatcggatcttcgagaacctgacagcctcagcaccaagcagctgccgcc
gcactgggtccgggcacggcctcaggaccgcggggtctctcaggtgacac
ccgggaccacccggccttaacctgtcaatgaggctacgccccgtcgtcac
aggccctggctgcaatggggagggtgcgcggcgagaggaacgcccgtgac
cggagcccctggccccgccctgaggccgcagccgtcgcccaggacccccg
cctcgagatctgcagagaccgaggcctccgggaccccgcccccgatcccc
gcctaccggggccgccgcgtcctcctcatccataggcctctcagctccgc
gttgtagctcttcggccgccgccaccacacacatccgggtccccgccctt
tcctctgctccgtcaggcccgcccccaccgctaaatctgaccaatccgca
gcgcttcttgaagaatgggcgccctcagcagcccaatcgcaggcacaggc
ggtgcggagcgcggcccggtgagctgggtacctacactcggcggcgtctg
aggaaacctggtgtcgggagggtgggggggaagg
gaattcactctgtagaaagactggcctcaaactcagcagacacccctacc
ctccccaactcccactcccacctctggttcccaagtgccaggattaaagg
tgtgtaccaccacgcccagctgtttgttcttcaaaacaaggtttttctgt
gtaggactggctatcctggaactctgtagaccaggctggccttgaactca
agagacccatccacctgcctcatcttcgaaagcactaggattaaaggcat
gcaccacgatgccaggctggtttatttactattttatgtgtgtgaactgg
agttacacacagctctaagccaccacatgggtccagcccggggcctccct
ttctgattctattctactccttgcctccctttttttttttcctttacttt
tcttaatattgtattcattttgtttttctttacatgtcacacatcacagt
gcatgtgtgacggtcagaagacagcctgaaggaactggttcactttctac
cccgtggatgccaaggatcaaactcaggtcaccagcctcagcagcgaatg
ccttcactggccgagacatctcctacgtccccacttttgatttctgaagt
ggggtctcactctgtggccaaggcagacattgaaggcctggcactcctcc
ctcaggctccctggagccaggagcagaggtgggtcaccaggcccagttat
tatcattgttgttggtgggttgttttgttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101965761_101967331
seq2: B6Ng01-307L13.b_46_1129

seq1  GAATTCTTCAACAGCCTGCTCTACATAGTGTGTGCCAGGGTAGACAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAACAGCCTGCTCTACATAGTGTGTGCCAGGGTAGACAGGGC  50

seq1  TACACAGTGAGGCCCTGTCTCAAACAAAAGAAAAAACAACTTAGCAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGAGGCCCTGTCTCAAACAAAAGAAAAAACAACTTAGCAGATC  100

seq1  TTAACTCCAAGTTGTAACAGAATTCAGAGGGCCGCAGCCCCTAAAGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCAAGTTGTAACAGAATTCAGAGGGCCGCAGCCCCTAAAGCAGC  150

seq1  AGCAGTACCGGAGAAAAACATGGGACTCTCTCGGTATTTAGACAACCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTACCGGAGAAAAACATGGGACTCTCTCGGTATTTAGACAACCAGC  200

seq1  AAGGCCAGTAAATGAATGAATGAATAAAATCTTCCAGAGATCCAAAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGTAAATGAATGAATGAATAAAATCTTCCAGAGATCCAAAAGCG  250

seq1  GGAAAACCATGAAGAAATATTTTCTTCCTGCCTCCCAAACACCTGGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCATGAAGAAATATTTTCTTCCTGCCTCCCAAACACCTGGCACT  300

seq1  GTGCCCTACACACAGTAGGTGCTTAGCAATCCTGGGCTAAGCTGAGTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTACACACAGTAGGTGCTTAGCAATCCTGGGCTAAGCTGAGTTCG  350

seq1  ATCCCAATGTGCACATTGGGGCTCTTCTGCAGGAGCTACAGACCAGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAATGTGCACATTGGGGCTCTTCTGCAGGAGCTACAGACCAGCACA  400

seq1  TGCCCCACAAGAGCAGACACCTGCGGCGCAGCACTGGGATCCCCCAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCACAAGAGCAGACACCTGCGGCGCAGCACTGGGATCCCCCAGGGC  450

seq1  CCTGGGCCAGGACTCGAACCCAGGTAGATGCCGGAGCCCCAGATCTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCAGGACTCGAACCCAGGTAGATGCCGGAGCCCCAGATCTGAAG  500

seq1  GCATCGGATCTTCGAGAACCTGACAGCCTCAGCACCAAGCAGCTGCCGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGGATCTTCGAGAACCTGACAGCCTCAGCACCAAGCAGCTGCCGCC  550

seq1  GCACTGGGTCCGGGCACGGCCTCAGGACCGCGGGGTCTCTCAGGTGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGTCCGGGCACGGCCTCAGGACCGCGGGGTCTCTCAGGTGACAC  600

seq1  CCGGGACCACCCGGCCTTAACCTGTCAATGAGGCTACGCCCCGTCGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGACCACCCGGCCTTAACCTGTCAATGAGGCTACGCCCCGTCGTCAC  650

seq1  AGGCCCTGGCTGCAATGGGGAGGGTGCGCGGCGAGAGGAACGCCCGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGGCTGCAATGGGGAGGGTGCGCGGCGAGAGGAACGCCCGTGAC  700

seq1  CGGAGCCCCTGGCCCCGCCCTGAGGCCGCAGCCGTCGCCCAGGACCCCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCCCCTGGCCCCGCCCTGAGGCCGCAGCCGTCGCCCAGGACCCCCG  750

seq1  CCTCGAGATCTGCAGAGACCGAGGCCTCCGGGACCCCGCCCCCGATCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAGATCTGCAGAGACCGAGGCCTCCGGGACCCCGCCCCCGATCCCC  800

seq1  GCCTACCGGGGCCGCCGCGTCCTCCTCATCCATAGGCCTCTCAGCTCCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCGGGGCCGCCGCGTCCTCCTCATCCATAGGCCTCTCAGCTCCGC  850

seq1  GTTGTAGCTCTTCGGCCGCCGCCACCACACACATCCGGGTCCCCGCCC-T  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTGTAGCTCTTCGGCCGCCGCCACCACACACATCCGGGTCCCCGCCCTT  900

seq1  TCCTCTGCTCCGTCAGGCCCGCCCCCACCGCTAAATCTGACCAATCCGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTCCGTCAGGCCCGCCCCCACCGCTAAATCTGACCAATCCGCA  950

seq1  GCGCTTCTTGAAG-ATGGGCGCCCTCAGCAG-CCAATCGCAGGGCACAGG  997
      ||||||||||||| ||||||||||||||||| ||||||||| ||||||||
seq2  GCGCTTCTTGAAGAATGGGCGCCCTCAGCAGCCCAATCGCA-GGCACAGG  999

seq1  CGGTGCGGAGCGCGGCCCGGTGAGCTGGGTACCTAACACTCGGCGGCGTC  1047
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGGTGCGGAGCGCGGCCCGGTGAGCTGGGTACCT-ACACTCGGCGGCGTC  1048

seq1  TGAGGAACCCTGGTGTCGGGAGGGTGGGGG---AGGCGACGTGGCTGCCC  1094
      ||||||| ||||||||||||||||||||||   |||              
seq2  TGAGGAAACCTGGTGTCGGGAGGGTGGGGGGGAAGG--------------  1084

seq1  GGACGCCACCTCGGACGCCTGGAGCTCAGGGAGGCGGTCAAGGGGCGGCT  1144
                                                        
seq2  --------------------------------------------------  1084

seq1  CCCTTGGGGCGGAGTAGGTCCCTGTGCCCGTGCGCGAGCTTCGTGTTCCC  1194
                                                        
seq2  --------------------------------------------------  1084

seq1  AGAGCCAGAAGTGATGCTAAAAACCTCTCTGGAATGTCCTTTTGAGCCAC  1244
                                                        
seq2  --------------------------------------------------  1084

seq1  TTAACGGCATGGGGGGGGGGATTTTTTTTTAATGTTATCTCCTATTTTAC  1294
                                                        
seq2  --------------------------------------------------  1084

seq1  GCGTGAGAAGCCAGAGGCTGATCTCCACAGCGGCAGCACTCGGCTGGCAC  1344
                                                        
seq2  --------------------------------------------------  1084

seq1  CACATGCTTTCTTCTCTCCGGAGCACCCCTTTGCACCACGTTCGTTCATT  1394
                                                        
seq2  --------------------------------------------------  1084

seq1  CCAGGACAGGCGTTCCAGAACAGGAGAGAACATATGCAAAAGGCACAGTG  1444
                                                        
seq2  --------------------------------------------------  1084

seq1  GGATGAAACCCGGGTGCTCTTTGGGCTTGGGCTTGGTAGGAAAAGTTAGC  1494
                                                        
seq2  --------------------------------------------------  1084

seq1  TCGGGTCAGAATGTACCGGAAAGGATACTAATCTTTATCATGCACCTCCT  1544
                                                        
seq2  --------------------------------------------------  1084

seq1  ATAAAGGGTATGATTGTCCTTGGAAGG  1571
                                 
seq2  ---------------------------  1084

seq1: chr15_102131703_102132436
seq2: B6Ng01-307L13.g_72_805 (reverse)

seq1  AAAAAAACAAAACAACCCACCAACAACAATGATAATAACTGGGCCTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAACAACCCACCAACAACAATGATAATAACTGGGCCTGGTG  50

seq1  ACCCACCTCTGCTCCTGGCTCCAGGGAGCCTGAGGGAGGAGTGCCAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTCTGCTCCTGGCTCCAGGGAGCCTGAGGGAGGAGTGCCAGGCC  100

seq1  TTCAATGTCTGCCTTGGCCACAGAGTGAGACCCCACTTCAGAAATCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTCTGCCTTGGCCACAGAGTGAGACCCCACTTCAGAAATCAAAA  150

seq1  GTGGGGACGTAGGAGATGTCTCGGCCAGTGAAGGCATTCGCTGCTGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGACGTAGGAGATGTCTCGGCCAGTGAAGGCATTCGCTGCTGAGGC  200

seq1  TGGTGACCTGAGTTTGATCCTTGGCATCCACGGGGTAGAAAGTGAACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCTGAGTTTGATCCTTGGCATCCACGGGGTAGAAAGTGAACCAG  250

seq1  TTCCTTCAGGCTGTCTTCTGACCGTCACACATGCACTGTGATGTGTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCAGGCTGTCTTCTGACCGTCACACATGCACTGTGATGTGTGACA  300

seq1  TGT--GGGCACACAAAATGAATACAATATTAAGAAAAGTAATGG-AAAAA  347
      |||   |  | |||||||||||||||||||||||||||||| || |||||
seq2  TGTAAAGAAAAACAAAATGAATACAATATTAAGAAAAGTAAAGGAAAAAA  350

seq1  AAAAAGGGAGGCAAGGAGTAGAATAGAATCAGAAAGGGAGGCCCCGGGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGAGGCAAGGAGTAGAATAGAATCAGAAAGGGAGGCCCCGGGCT  400

seq1  GGACCCATGTGGTGGCTTAGAGCTGTGTGTAACTCCAGTTCACACACATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCATGTGGTGGCTTAGAGCTGTGTGTAACTCCAGTTCACACACATA  450

seq1  AAATAGTAAATAAACCAGCCTGGCATCGTGGTGCATGCCTTTAATCCTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAAATAAACCAGCCTGGCATCGTGGTGCATGCCTTTAATCCTAG  500

seq1  TGCTTTCGAAGATGAGGCAGGTGGATGGGTCTCTTGAGTTCAAGGCCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCGAAGATGAGGCAGGTGGATGGGTCTCTTGAGTTCAAGGCCAGC  550

seq1  CTGGTCTACAGAGTTCCAGGATAGCCAGTCCTACACAGAAAAACCTTGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTTCCAGGATAGCCAGTCCTACACAGAAAAACCTTGTT  600

seq1  TTGAAGAACAAACAGCTGGGCGTGGTGGTACACACCTTTAATCCTGGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACAAACAGCTGGGCGTGGTGGTACACACCTTTAATCCTGGCAC  650

seq1  TTGGGAACCAGAGGTGGGAGTGGGAGGGGTGGGGAGGGTAGGGGTGTCTG  697
      |||||||||||||||||||||||||  | |||||||||||||||||||||
seq2  TTGGGAACCAGAGGTGGGAGTGGGA--GTTGGGGAGGGTAGGGGTGTCTG  698

seq1  CTGAGTTTGAGGCCAGTCTGGTCTACAGAGTGAATTC  734
      |||||||||||||||||||  ||||||||||||||||
seq2  CTGAGTTTGAGGCCAGTCT-TTCTACAGAGTGAATTC  734