BAC Information

Click to search

BAC

Clone NameB6Ng01-311F07
Chromosome15 (Build37)
Map Location 47,344,477 - 47,442,597
singlet/doubletdoublet
Overlap geneLOC100039493, Csmd3
Upstream geneLOC100039438, LOC665130, LOC100039485
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311F07.bB6Ng01-311F07.g
ACCGA103076GA103077
length1,098733
definitionB6Ng01-311F07.b B6Ng01-311F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,441,505 - 47,442,597)(47,344,477 - 47,345,209)
sequence
gaattccactgaggaatttaagtagatataaccatttctttgtgaaagtt
ggccaaaacttagtcatatttgcttcatgagtttatatacttctgttgtc
atacatcaaaaacaatggcaaactcatattttcattcaagaacacatgaa
tgcagctatcctgtaagaaaggggttatgggtagagaaactgaaaatgta
tttcgagaaaacattcaaattgaactggccagtaagacaagtagaaagct
ggtagcagtgagcactaggaaagccttaagcaggacacatagagtgagga
gttacaaaagtgagcaaggagattttacaggaagatgtgggagctgggag
gaaaagtgaaacaagagtctaaagaagaaatacagaaagcattcccagtt
gtggaaaaactgcttatttaatctgtcaatcattgatatggtaaatttca
aaaaaaccaatctcttcctaaccctatattttaaaattcatagttgggtt
tatttatgggaatcattcagcatgcccattcatatgtgatttactttttt
ctcctttttttcaaatttagatctcatgtatagattcagcaagttttccc
tcacaagggtcaaagggaagccaaaacacatgctgattctagaaggaaat
agaccatttacacattacccaattgctttctgtggcagacttttctaaat
tgtgttatgctgaggaaaattcagtgtgaacctgaaaaatgtccatttct
taaggaagggctcatctaaagtgctatatttttgttgctaaaaatagttt
ccacttatctacttttaaggcacagtatgaacattgatttcagagtgttt
tcaattcttcaggtttgcttcagtatggctcagataataccaaactgtaa
aagcatgcgtctgtctttgtaacataggtattttagagaacttagccata
tgtctctagaaaaggctgttatcatttgatctaaattgcacataaaaggt
tacttgtttaaacagcattagttctcagccgcacgacggaaaagaaaatg
atgctagccagcatatagcctgtcttctcatgattgcactatgtaatc

gaattcaatgaaatataaagcaatcatatgctttaatatactttataaaa
taatacgtaaagtatatataaacacactttctaagataattaaaaacgct
atcaccaaataaattttgtgtagcattacacaatcaagggatgaaaatat
agttttgaaaatacataacataagcaagaatacttcacggtctgttcaca
tgggacaattacaatatgtggtggtgttattgaaaaatgtactggcaatg
gttaacatcaagaacttttaaagtgtttatatggtcttacatatatctgt
ttcttaattactcccatctactgaatatgatgaaaattaagatcacataa
tttatttttcaggagggttagagacataatgatgaaagtcatgtagccat
ttgtaagggaagacaattgattattaaactgaatgcagtatttactcaaa
ataaatataaaacatgtatagagtattaataaaacaatgtcatcacttcc
tgaatgattataaagtcatttttagcctggtggtcccttcagtttgggac
cttaggaatgtcctgtctttacagctacccttaattgttacaagtgattt
atgaaatgaaacttaggtttttgaagaccaaaattccatatttcagaaat
agagatgtatctctttctttcttttctttttcttttgttttttgtttttt
ttttgtttgtctggttggttggttggttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47441505_47442597
seq2: B6Ng01-311F07.b_45_1142 (reverse)

seq1  GATTACATAGTGCAACCATGAG-AGACA-GCTATATGCTTGGCTAGCATC  48
      ||||||||||||||| |||||| ||||| ||||||||| |||||||||||
seq2  GATTACATAGTGCAATCATGAGAAGACAGGCTATATGC-TGGCTAGCATC  49

seq1  ATTTTCTTT--CGTCCTTGCGCTGAGAACTAATGCTGTTT-AACAAGTAA  95
      |||||||||  |||| |   |||||||||||||||||||| |||||||||
seq2  ATTTTCTTTTCCGTCGTGCGGCTGAGAACTAATGCTGTTTAAACAAGTAA  99

seq1  ACTTTTATGTGCAA-TTAGATCAAATGATAACAGCCTTTTCTAGAGACAT  144
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTTTTATGTGCAATTTAGATCAAATGATAACAGCCTTTTCTAGAGACAT  149

seq1  ATGGCTAAGTTCTCTAAAATACCTATGTTACAAAGACAGACGCATGCTTT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAGTTCTCTAAAATACCTATGTTACAAAGACAGACGCATGCTTT  199

seq1  TACAGTTTGGTATTATCTGAGCCATACTGAAGCAAACCTGAAGAATTGAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTGGTATTATCTGAGCCATACTGAAGCAAACCTGAAGAATTGAA  249

seq1  AACACTCTGAAATCAATGTTCATACTGTGCCTTAAAAGTAGATAAGTGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTGAAATCAATGTTCATACTGTGCCTTAAAAGTAGATAAGTGGA  299

seq1  AACTATTTTTAGCAACAAAAATATAGCACTTTAGATGAGCCCTTCCTTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTTAGCAACAAAAATATAGCACTTTAGATGAGCCCTTCCTTAA  349

seq1  GAAATGGACATTTTTCAGGTTCACACTGAATTTTCCTCAGCATAACACAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGACATTTTTCAGGTTCACACTGAATTTTCCTCAGCATAACACAA  399

seq1  TTTAGAAAAGTCTGCCACAGAAAGCAATTGGGTAATGTGTAAATGGTCTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGTCTGCCACAGAAAGCAATTGGGTAATGTGTAAATGGTCTA  449

seq1  TTTCCTTCTAGAATCAGCATGTGTTTTGGCTTCCCTTTGACCCTTGTGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTAGAATCAGCATGTGTTTTGGCTTCCCTTTGACCCTTGTGAG  499

seq1  GGAAAACTTGCTGAATCTATACATGAGATCTAAATTTGAAAAAAAGGAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTTGCTGAATCTATACATGAGATCTAAATTTGAAAAAAAGGAGA  549

seq1  AAAAAGTAAATCACATATGAATGGGCATGCTGAATGATTCCCATAAATAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAATCACATATGAATGGGCATGCTGAATGATTCCCATAAATAA  599

seq1  ACCCAACTATGAATTTTAAAATATAGGGTTAGGAAGAGATTGGTTTTTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACTATGAATTTTAAAATATAGGGTTAGGAAGAGATTGGTTTTTTT  649

seq1  GAAATTTACCATATCAATGATTGACAGATTAAATAAGCAGTTTTTCCACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTACCATATCAATGATTGACAGATTAAATAAGCAGTTTTTCCACA  699

seq1  ACTGGGAATGCTTTCTGTATTTCTTCTTTAGACTCTTGTTTCACTTTTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAATGCTTTCTGTATTTCTTCTTTAGACTCTTGTTTCACTTTTCC  749

seq1  TCCCAGCTCCCACATCTTCCTGTAAAATCTCCTTGCTCACTTTTGTAACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTCCCACATCTTCCTGTAAAATCTCCTTGCTCACTTTTGTAACT  799

seq1  CCTCACTCTATGTGTCCTGCTTAAGGCTTTCCTAGTGCTCACTGCTACCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCTATGTGTCCTGCTTAAGGCTTTCCTAGTGCTCACTGCTACCA  849

seq1  GCTTTCTACTTGTCTTACTGGCCAGTTCAATTTGAATGTTTTCTCGAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTACTTGTCTTACTGGCCAGTTCAATTTGAATGTTTTCTCGAAAT  899

seq1  ACATTTTCAGTTTCTCTACCCATAACCCCTTTCTTACAGGATAGCTGCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCAGTTTCTCTACCCATAACCCCTTTCTTACAGGATAGCTGCAT  949

seq1  TCATGTGTTCTTGAATGAAAATATGAGTTTGCCATTGTTTTTGATGTATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTTCTTGAATGAAAATATGAGTTTGCCATTGTTTTTGATGTATG  999

seq1  ACAACAGAAGTATATAAACTCATGAAGCAAATATGACTAAGTTTTGGCCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAAGTATATAAACTCATGAAGCAAATATGACTAAGTTTTGGCCA  1049

seq1  ACTTTCACAAAGAAATGGTTATATCTACTTAAATTCCTCAGTGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACAAAGAAATGGTTATATCTACTTAAATTCCTCAGTGGAATTC  1098


seq1: chr15_47344477_47345209
seq2: B6Ng01-311F07.g_67_799

seq1  GAATTCAATGAAATATAAAGCAATCATATGCTTTAATATACTTTATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAATATAAAGCAATCATATGCTTTAATATACTTTATAAAA  50

seq1  TAATACGTAAAGTATATATAAACACACTTTCTAAGATAATTAAAAACGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACGTAAAGTATATATAAACACACTTTCTAAGATAATTAAAAACGCT  100

seq1  ATCACCAAATAAATTTTGTGTAGCATTACACAATCAAGGGATGAAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAATAAATTTTGTGTAGCATTACACAATCAAGGGATGAAAATAT  150

seq1  AGTTTTGAAAATACATAACATAAGCAAGAATACTTCACGGTCTGTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAAAATACATAACATAAGCAAGAATACTTCACGGTCTGTTCACA  200

seq1  TGGGACAATTACAATATGTGGTGGTGTTATTGAAAAATGTACTGGCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAATTACAATATGTGGTGGTGTTATTGAAAAATGTACTGGCAATG  250

seq1  GTTAACATCAAGAACTTTTAAAGTGTTTATATGGTCTTACATATATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATCAAGAACTTTTAAAGTGTTTATATGGTCTTACATATATCTGT  300

seq1  TTCTTAATTACTCCCATCTACTGAATATGATGAAAATTAAGATCACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATTACTCCCATCTACTGAATATGATGAAAATTAAGATCACATAA  350

seq1  TTTATTTTTCAGGAGGGTTAGAGACATAATGATGAAAGTCATGTAGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTCAGGAGGGTTAGAGACATAATGATGAAAGTCATGTAGCCAT  400

seq1  TTGTAAGGGAAGACAATTGATTATTAAACTGAATGCAGTATTTACTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGGAAGACAATTGATTATTAAACTGAATGCAGTATTTACTCAAA  450

seq1  ATAAATATAAAACATGTATAGAGTATTAATAAAACAATGTCATCACTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATAAAACATGTATAGAGTATTAATAAAACAATGTCATCACTTCC  500

seq1  TGAATGATTATAAAGTCATTTTTAGCCTGGTGGTCCCTTCAGTTTGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATTATAAAGTCATTTTTAGCCTGGTGGTCCCTTCAGTTTGGGAC  550

seq1  CTTAGGAATGTCCTGTCTTTACAGCTACCCTTAATTGTTACAAGTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAATGTCCTGTCTTTACAGCTACCCTTAATTGTTACAAGTGATTT  600

seq1  ATGAAATGAAACTTAGGTTTTTGAAGACCAAAATTCCATATTTCAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGAAACTTAGGTTTTTGAAGACCAAAATTCCATATTTCAGAAAT  650

seq1  AGAGATGTATCTCTTTCTTTCTTTTCTTTTTCTTTTGTTTTTTGTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTATCTCTTTCTTTCTTTTCTTTTTCTTTTGTTTTTTGTTTTTT  700

seq1  TTTTGTTTGTCTGGTTGGTTGGTTGGTTGGTTG  733
      |||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTCTGGTTGGTTGGTTGGTTGGTTG  733


| Home | SequenceCutter | Blast | Download |