BAC Information

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BAC

Clone NameB6Ng01-311J23
Chromosome15 (Build37)
Map Location 9,449,006 - 9,530,557
singlet/doubletdoublet
Overlap geneIl7r
Upstream geneLOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl
Downstream geneC230086A09Rik, Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311J23.bB6Ng01-311J23.g
ACCGA103294GA103295
length1,1311,111
definitionB6Ng01-311J23.b B6Ng01-311J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,449,006 - 9,450,149)(9,529,438 - 9,530,557)
sequence
gaattcattttgtataagcaacttgaatagaggcattctgtcaagatgtc
tacttctaactgatcccagtttttcctcttttcaggatgacttagctggg
cttgaagaaaaaagagcatgcaggcaacaagttcacaaggacacatttca
aaaggaagggcattaaacttaaaacttgtgaaaagagaataaactagtac
ttttccttttatcctgtatcatttatttttatagcaagaatgcatgactt
cattatttctttagttttcccccattactcacttaaccttgcctactttc
ttctttgttcactgcagggtttaaaggtgaaggagggaattgcatgtagc
aaaatatgtccatctccaatggtttttgagaaatgtgtatgacatgcaaa
catcagtcaagttctacctataggatatttattttttctttttttaaaag
attttccaagttgtgactgtttattaactaaccagattacaaaattttct
ttcacactgaacagttgccttttgagcgtgtgacagttaacctgattcct
aaggaagaaccagaattctcccttctaccacatcttagtttttccagctg
gtagtggttgtcagcaatgcaataccattactattctttcatacttgatt
tcatccgcttggtcacatgcctaggagttacattctagatgatgcttatt
ttcttatatcccatctttataactactgagtagcaaatcactgaatgaat
atggtacacattttcaatccttattagatagctcttgtcctatctttgta
caggaagacaaaggtatcgtcatagctttggcaaagttagacatgggtca
aaaccagatgcaattattaaaactagagataaggaagaaattgtaagttt
atttttggcatatataatttaattttttatatttattaaattcatttatt
caccttacatcccaatatcagcctccctctcctcctagtaccctcatgca
gatctccctctattcccccccccccccgtctcttccttccactgacagat
agagagttgttcaaagcccacaccctcagaatctctggtgtgtgatggat
gcatgtcctccttgatgtatcggttcagaaa
gaattcttttgaagatttttgacacagagaactacctaccatatcattcc
caacttgtgttacaggtaggtaaaggccaaaatgataccagtgaacagaa
tgccaacagtcttctagatctcgttctccaagcggatatcatcagatttg
ctcatttcttgacagacatcattagtatccttagccttctgtcccacacc
agtaggaacagaaattcttcaattgcagatgtatttgcttccttggagtc
aaccctggaaatgctccagatatatcaatcaaggtgacaggttgcggact
tctaagggtctgtctgtcaaggtagatgatctgacttggggaattgtttt
ccaggtatgctttcatgtaactctttacttggatgatcttctcccagacc
agggccaaaagaacgcagggtggattcagccacacactttcacggtaact
gcctcaggggggaagcaaacatttcttccgtgagaaaggtggttttaaca
catcttatcgagagattgcgaggctgttttagagatgccagccttgatgt
ggtgagagcaactgtgattggaagctttagactgtggcctacaaagataa
atcaaggtaacctataggcgccaataagccagtgccttttgattgctgtg
aatttattttagctatgtgacatttttgtttatgtgtatgggttgcagaa
tttggagtcaaagagatatccatcctgatttcatattatgaaccagttct
caaagctgccaatgtgaaaacggatgaggtagataccgagtggagcatgt
taaaattagaattatatggcaggtcagtatgagagtgaactgaattgatt
ggcatgcatccgcacctgcgtacaagttaggttgctcaatctttcatgtc
cttcatcttccctgctagatttcagacattcgaaagctgactgggatttt
gtaaactccatttattccataaatatccaagtgtcctgatgctgtgactg
gtgctgcctccctgcagctcagcagagtcagaacggtgggtgtagttcaa
gaggaaacgcatgatgaagaatcaagccctgaacccatgacgacatccta
cgtttcagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_9449006_9450149
seq2: B6Ng01-311J23.b_48_1178

seq1  GAATTCATTTTGTATAAGCAACTTGAATAGAGGCATTCTGTCAAGATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTATAAGCAACTTGAATAGAGGCATTCTGTCAAGATGTC  50

seq1  TACTTCTAACTGATCCCAGTTTTTCCTCTTTTCAGGATGACTTAGCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTAACTGATCCCAGTTTTTCCTCTTTTCAGGATGACTTAGCTGGG  100

seq1  CTTGAAGAAAAAAGAGCATGCAGGCAACAAGTTCACAAGGACACATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGAAAAAAGAGCATGCAGGCAACAAGTTCACAAGGACACATTTCA  150

seq1  AAAGGAAGGGCATTAAACTTAAAACTTGTGAAAAGAGAATAAACTAGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGGCATTAAACTTAAAACTTGTGAAAAGAGAATAAACTAGTAC  200

seq1  TTTTCCTTTTATCCTGTATCATTTATTTTTATAGCAAGAATGCATGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTATCCTGTATCATTTATTTTTATAGCAAGAATGCATGACTT  250

seq1  CATTATTTCTTTAGTTTTCCCCCATTACTCACTTAACCTTGCCTACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTCTTTAGTTTTCCCCCATTACTCACTTAACCTTGCCTACTTTC  300

seq1  TTCTTTGTTCACTGCAGGGTTTAAAGGTGAAGGAGGGAATTGCATGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTCACTGCAGGGTTTAAAGGTGAAGGAGGGAATTGCATGTAGC  350

seq1  AAAATATGTCCATCTCCAATGGTTTTTGAGAAATGTGTATGACATGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTCCATCTCCAATGGTTTTTGAGAAATGTGTATGACATGCAAA  400

seq1  CATCAGTCAAGTTCTACCTATAGGATATTTATTTTTTCTTTTTTTAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCAAGTTCTACCTATAGGATATTTATTTTTTCTTTTTTTAAAAG  450

seq1  ATTTTCCAAGTTGTGACTGTTTATTAACTAACCAGATTACAAAATTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAAGTTGTGACTGTTTATTAACTAACCAGATTACAAAATTTTCT  500

seq1  TTCACACTGAACAGTTGCCTTTTGAGCGTGTGACAGTTAACCTGATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTGAACAGTTGCCTTTTGAGCGTGTGACAGTTAACCTGATTCCT  550

seq1  AAGGAAGAACCAGAATTCTCCCTTCTACCACATCTTAGTTTTTCCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAACCAGAATTCTCCCTTCTACCACATCTTAGTTTTTCCAGCTG  600

seq1  GTAGTGGTTGTCAGCAATGCAATACCATTACTATTCTTTCATACTTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTTGTCAGCAATGCAATACCATTACTATTCTTTCATACTTGATT  650

seq1  TCATCCGCTTGGTCACATGCCTAGGAGTTACATTCTAGATGATGCTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCGCTTGGTCACATGCCTAGGAGTTACATTCTAGATGATGCTTATT  700

seq1  TTCTTATATCCCATCTTTATAACTACTGAGTAGCAAATCACTGAATGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATATCCCATCTTTATAACTACTGAGTAGCAAATCACTGAATGAAT  750

seq1  ATGGTACACATTTTCAATCCTTATTAGATAGCTCTTGTCCTATCTTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACACATTTTCAATCCTTATTAGATAGCTCTTGTCCTATCTTTGTA  800

seq1  CAGGAAGACAAAGGTATCGTCATAGCTTTGGCAAAGTTAGACATGGGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGACAAAGGTATCGTCATAGCTTTGGCAAAGTTAGACATGGGTCA  850

seq1  AAACCAGATGCAATTATTAAAACTAGAGATAAGGGAAGAAATTGTAAGTT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAACCAGATGCAATTATTAAAACTAGAGATAA-GGAAGAAATTGTAAGTT  899

seq1  TATTTTTGGCATATATAATTTAATTTTTTATATTTATTAAATTCATTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGGCATATATAATTTAATTTTTTATATTTATTAAATTCATTTAT  949

seq1  TCACCTTACATCCCAATATCAGCCTCCCTCT-CTCCTAGTAACCCCTCAT  999
      ||||||||||||||||||||||||||||||| |||||||||  |||||||
seq2  TCACCTTACATCCCAATATCAGCCTCCCTCTCCTCCTAGTA--CCCTCAT  997

seq1  GCAGATCCTCCCTCTATTCCCCCCCCCCCCCCCGTCTCCTTCCCTTCCCA  1049
      |||||| |||||||||||  ||||||||||||||||| |||||  | |||
seq2  GCAGAT-CTCCCTCTATT--CCCCCCCCCCCCCGTCT-CTTCC--TTCCA  1041

seq1  CTGACAGGATAGAGAGTTGTTCAAAAGCCCACACCCTCAGAATCTCTGTG  1099
      |||||| ||||||||||||||| ||||||||||||||||||||||||| |
seq2  CTGACA-GATAGAGAGTTGTTC-AAAGCCCACACCCTCAGAATCTCTG-G  1088

seq1  TGTGGATTGAATGCAATGTCCTCCCTGAAATGTATC-GTTCAGAAA  1144
      ||||   || |||| ||||||||| ||  ||||||| |||||||||
seq2  TGTGTGATGGATGC-ATGTCCTCCTTG--ATGTATCGGTTCAGAAA  1131

seq1: chr15_9529438_9530557
seq2: B6Ng01-311J23.g_65_1175 (reverse)

seq1  TAGCTGAACGGTTAGGATGTCTGTCATGGTTTCA-GGCTTGATTCTCTCA  49
      ||||||||  | ||||||||| ||||||| |||| ||||||||||| |||
seq2  TAGCTGAAACG-TAGGATGTC-GTCATGGGTTCAGGGCTTGATTCT-TCA  47

seq1  TCCATGCGTTTCCTCT--GACTACACCCA-CGTTCTGGCTCTGCTGAGCT  96
      | ||||||||||||||   |||||||||| ||||||| ||||||||||| 
seq2  T-CATGCGTTTCCTCTTGAACTACACCCACCGTTCTGACTCTGCTGAGC-  95

seq1  TGCAGGGAGGGCCAGCACCAAGTCAACAAGCATCAGGACACTTGGATATT  146
      ||||||||||  ||||||| |||||   ||||||||||||||||||||||
seq2  TGCAGGGAGG--CAGCACC-AGTCA--CAGCATCAGGACACTTGGATATT  140

seq1  TATGGGAATAAATGGAGTTTACAAAATCCCAGGTCAGCTTTCGAATGTTC  196
      ||| ||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TAT-GGAATAAATGGAGTTTACAAAATCCCA-GTCAGCTTTCGAATG-TC  187

seq1  TGAAATCTAGCAGGGAAGATGAAGGACATGAAAGATTGAGCAACCTAACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTAGCAGGGAAGATGAAGGACATGAAAGATTGAGCAACCTAACT  237

seq1  TGTACGCAGGTGCGGATGCATGCCAATCAATTCAGTTCACTCTCATACTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGCAGGTGCGGATGCATGCCAATCAATTCAGTTCACTCTCATACTG  287

seq1  ACCTGCCATATAATTCTAATTTTAACATGCTCCACTCGGTATCTACCTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCATATAATTCTAATTTTAACATGCTCCACTCGGTATCTACCTCA  337

seq1  TCCGTTTTCACATTGGCAGCTTTGAGAACTGGTTCATAATATGAAATCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTTCACATTGGCAGCTTTGAGAACTGGTTCATAATATGAAATCAG  387

seq1  GATGGATATCTCTTTGACTCCAAATTCTGCAACCCATACACATAAACAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATATCTCTTTGACTCCAAATTCTGCAACCCATACACATAAACAAA  437

seq1  AATGTCACATAGCTAAAATAAATTCACAGCAATCAAAAGGCACTGGCTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACATAGCTAAAATAAATTCACAGCAATCAAAAGGCACTGGCTTA  487

seq1  TTGGCGCCTATAGGTTACCTTGATTTATCTTTGTAGGCCACAGTCTAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGCCTATAGGTTACCTTGATTTATCTTTGTAGGCCACAGTCTAAAG  537

seq1  CTTCCAATCACAGTTGCTCTCACCACATCAAGGCTGGCATCTCTAAAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATCACAGTTGCTCTCACCACATCAAGGCTGGCATCTCTAAAACA  587

seq1  GCCTCGCAATCTCTCGATAAGATGTGTTAAAACCACCTTTCTCACGGAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGCAATCTCTCGATAAGATGTGTTAAAACCACCTTTCTCACGGAAG  637

seq1  AAATGTTTGCTTCCCCCCTGAGGCAGTTACCGTGAAAGTGTGTGGCTGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGCTTCCCCCCTGAGGCAGTTACCGTGAAAGTGTGTGGCTGAA  687

seq1  TCCACCCTGCGTTCTTTTGGCCCTGGTCTGGGAGAAGATCATCCAAGTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTGCGTTCTTTTGGCCCTGGTCTGGGAGAAGATCATCCAAGTAA  737

seq1  AGAGTTACATGAAAGCATACCTGGAAAACAATTCCCCAAGTCAGATCATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACATGAAAGCATACCTGGAAAACAATTCCCCAAGTCAGATCATC  787

seq1  TACCTTGACAGACAGACCCTTAGAAGTCCGCAACCTGTCACCTTGATTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGACAGACAGACCCTTAGAAGTCCGCAACCTGTCACCTTGATTGA  837

seq1  TATATCTGGAGCATTTCCAGGGTTGACTCCAAGGAAGCAAATACATCTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGGAGCATTTCCAGGGTTGACTCCAAGGAAGCAAATACATCTGC  887

seq1  AATTGAAGAATTTCTGTTCCTACTGGTGTGGGACAGAAGGCTAAGGATAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGAATTTCTGTTCCTACTGGTGTGGGACAGAAGGCTAAGGATAC  937

seq1  TAATGATGTCTGTCAAGAAATGAGCAAATCTGATGATATCCGCTTGGAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGTCTGTCAAGAAATGAGCAAATCTGATGATATCCGCTTGGAGA  987

seq1  ACGAGATCTAGAAGACTGTTGGCATTCTGTTCACTGGTATCATTTTGGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGATCTAGAAGACTGTTGGCATTCTGTTCACTGGTATCATTTTGGCC  1037

seq1  TTTACCTACCTGTAACACAAGTTGGGAATGATATGGTAGGTAGTTCTCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTACCTGTAACACAAGTTGGGAATGATATGGTAGGTAGTTCTCTG  1087

seq1  TGTCAAAAATCTTCAAAAGAATTC  1120
      ||||||||||||||||||||||||
seq2  TGTCAAAAATCTTCAAAAGAATTC  1111