BAC Information

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BAC

Clone NameB6Ng01-312I10
Chromosome15 (Build37)
Map Location 18,398,893 - 18,535,106
singlet/doubletdoublet
Overlap geneLOC666839
Upstream geneLOC100040162, LOC666835
Downstream geneCdh10, EG666857, EG666875, LOC621884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312I10.bB6Ng01-312I10.g
ACCGA103973GA103974
length1,132847
definitionB6Ng01-312I10.b B6Ng01-312I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,533,991 - 18,535,106)(18,398,893 - 18,399,581)
sequence
gaattccttctttttcttcttcatttaatttatatcttgaaggagaggga
gcaaggagagataaatcaaactaagaatatttagaaaagccttaaataat
catattatttcatcgtaatataaattgcatacaagacactcacaaacaca
aatataggctgttacttccagaggtggaacgtaaatctgttgctgaagtc
cccatgatttttggacacaggaatgtgaagattcaagtcttgatcttact
tgacagccttctctccgaggactggctttcattgttccagaaggtgctgt
cagcaaaggagacaagcagttcatgagagtcctccccagctgtgaagcct
atgaactatggcctcttgcacaggctgtatcagcaggtatggtcatgcat
tcctcctgatcagagataactgaatgttttcctttacataatcttcagtc
attaaataaaacacaagtaaacacactttcgcaatgcagagacaataaat
agttaatatatggaggcattcaacaattagaaaacaaatgatgagaagta
aaacctggggctggaaagatgactcagcagttaagagcactgcttgctct
tccaaaggttcaattctcagcaaccacatggtggctcacaaccatctgta
atggggatccgatgccctcttctggtgtgtctgaacacagcgacagtgta
ctcacatacatgaaataaataaataaatcttaaaacaacaacaagaaaga
aaacaaaacagaaaagtaaaacctggttgttcctttcaggatcttagaaa
atgtatatgattaaattttcaataaattggagggtttcgagataactttc
tacaagaattgtttttttcaaattactttttttgttttatattccttcct
gttgtcgtaataaaatatgacaaaaccaaactaggagagaaaaggattta
tttctgggtccccgttctatattacattctttcacatttagggatgctac
agcagcagaaaacttgacatacttggtcatcacatccataaatcagagag
caaaatcaaatccggtgactgaaattttgccttatacctcagcttgcctt
cctcccccctctgataccaattcaatatccac

gaattcatctcagaaaatattttgcagatactaggtggataatgaaaact
ctgaaggctaatttacttgattgctgttagggaaacatggtaaccaactg
agagaaagaggacgtgaaaaccttggactgcagtccacaatatcagagaa
ggtatttatagctgaaacggtaaggcagatatataactctatagcttcca
ggttaatgattttttttattaggtattttctttatttacatttcaaatgc
tctcccctttcctagtttcctctcctaaaatcccctatccactccctcat
cccctgctccccaacccaccttctcctgcttgctggccctggcattccag
tatactgggacatagaaccttcacaagaccaagggactctcctcctatta
atgaccaactaggccatcctctgctacatatgcagctagagacacaagtc
acaccatgtgttttcattgattggacagagcacaggatccccaatgaagg
agctagagaaagtacccaaggagctgaaggggcttgcagccctataggag
gaacaacaatatgaactaatcagtacccccaggttaatgttttcatagaa
tacccgtgtgtgaacagatgtttgtttgacatttttgccttcacttggga
gtatttttcttttgttttgtccaattctaatatgttagtttttgttttct
tttatttcattttttaatttaattttattgttatctcttagaagcctgtt
gattttctcttgacacacacacacacactcagagagagagaaagagagaa
tgagagggagagagagggagagagagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18533991_18535106
seq2: B6Ng01-312I10.b_46_1177 (reverse)

seq1  GTGGATATTGAATT-GTATCAGA--GTGAAGGAA-GCAAGCTGA-GTATA  45
      |||||||||||||| ||||||||  | | ||||| ||||||||| |||||
seq2  GTGGATATTGAATTGGTATCAGAGGGGGGAGGAAGGCAAGCTGAGGTATA  50

seq1  A-GCAAAA-TTCAGTCACCG--ATTGATTTTGCTCTCTGA-TTATGGATG  90
      | |||||| |||||||||||   ||||||||||||||||| |||||||||
seq2  AGGCAAAATTTCAGTCACCGGATTTGATTTTGCTCTCTGATTTATGGATG  100

seq1  TGATGACCAAGTATGTCAAG-TTTCTGCTGCTGTAGCATCCCT-AATGTG  138
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TGATGACCAAGTATGTCAAGTTTTCTGCTGCTGTAGCATCCCTAAATGTG  150

seq1  AAAGAATGTAATATAGAACGGGGA-CCAGAAATAAATCC-TTTCTCTCCT  186
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  AAAGAATGTAATATAGAACGGGGACCCAGAAATAAATCCTTTTCTCTCCT  200

seq1  AGTTT-GTTTTGTCATATTTTATTACGACAACAGGAAGGAATATAAAACA  235
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGTTTTGTCATATTTTATTACGACAACAGGAAGGAATATAAAACA  250

seq1  AAAAAAGTAATTTG-AAAAAACAATTCTTGTAGAAAGTTATCTCGAAACC  284
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTAATTTGAAAAAAACAATTCTTGTAGAAAGTTATCTCGAAACC  300

seq1  CTCCAATTTATTGAAAATTTAATCATATACATTTTCTAAGATCCTGAAAG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTTATTGAAAATTTAATCATATACATTTTCTAAGATCCTGAAAG  350

seq1  GAACAACCAGGTTTTACTTTTCTGTTTTGTTTTCTTTCTTGTTGTTGTTT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACCAGGTTTTACTTTTCTGTTTTGTTTTCTTTCTTGTTGTTGTTT  400

seq1  TAAGATTTATTTATTTATTTCATGTATGTGAGTACACTGTCGCTGTGTTC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTATTTATTTATTTCATGTATGTGAGTACACTGTCGCTGTGTTC  450

seq1  AGACACACCAGAAGAGGGCATCGGATCCCCATTACAGATGGTTGTGAGCC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACCAGAAGAGGGCATCGGATCCCCATTACAGATGGTTGTGAGCC  500

seq1  ACCATGTGGTTGCTGAGAATTGAACCTTTGGAAGAGCAAGCAGTGCTCTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGTTGCTGAGAATTGAACCTTTGGAAGAGCAAGCAGTGCTCTT  550

seq1  AACTGCTGAGTCATCTTTCCAGCCCCAGGTTTTACTTCTCATCATTTGTT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGAGTCATCTTTCCAGCCCCAGGTTTTACTTCTCATCATTTGTT  600

seq1  TTCTAATTGTTGAATGCCTCCATATATTAACTATTTATTGTCTCTGCATT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTGTTGAATGCCTCCATATATTAACTATTTATTGTCTCTGCATT  650

seq1  GCGAAAGTGTGTTTACTTGTGTTTTATTTAATGACTGAAGATTATGTAAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAAGTGTGTTTACTTGTGTTTTATTTAATGACTGAAGATTATGTAAA  700

seq1  GGAAAACATTCAGTTATCTCTGATCAGGAGGAATGCATGACCATACCTGC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACATTCAGTTATCTCTGATCAGGAGGAATGCATGACCATACCTGC  750

seq1  TGATACAGCCTGTGCAAGAGGCCATAGTTCATAGGCTTCACAGCTGGGGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGCCTGTGCAAGAGGCCATAGTTCATAGGCTTCACAGCTGGGGA  800

seq1  GGACTCTCATGAACTGCTTGTCTCCTTTGCTGACAGCACCTTCTGGAACA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCATGAACTGCTTGTCTCCTTTGCTGACAGCACCTTCTGGAACA  850

seq1  ATGAAAGCCAGTCCTCGGAGAGAAGGCTGTCAAGTAAGATCAAGACTTGA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCCAGTCCTCGGAGAGAAGGCTGTCAAGTAAGATCAAGACTTGA  900

seq1  ATCTTCACATTCCTGTGTCCAAAAATCATGGGGACTTCAGCAACAGATTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACATTCCTGTGTCCAAAAATCATGGGGACTTCAGCAACAGATTT  950

seq1  ACGTTCCACCTCTGGAAGTAACAGCCTATATTTGTGTTTGTGAGTGTCTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCCACCTCTGGAAGTAACAGCCTATATTTGTGTTTGTGAGTGTCTT  1000

seq1  GTATGCAATTTATATTACGATGAAATAATATGATTATTTAAGGCTTTTCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAATTTATATTACGATGAAATAATATGATTATTTAAGGCTTTTCT  1050

seq1  AAATATTCTTAGTTTGATTTATCTCTCCTTGCTCCCTCTCCTTCAAGATA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTTAGTTTGATTTATCTCTCCTTGCTCCCTCTCCTTCAAGATA  1100

seq1  TAAATTAAATGAAGAAGAAAAAGAAGGAATTC  1116
      ||||||||||||||||||||||||||||||||
seq2  TAAATTAAATGAAGAAGAAAAAGAAGGAATTC  1132


seq1: chr15_18398893_18399581
seq2: B6Ng01-312I10.g_63_751

seq1  GAATTCATCTCAGAAAATATTTTGCAGATACTAGGTGGATAATGAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAGAAAATATTTTGCAGATACTAGGTGGATAATGAAAACT  50

seq1  CTGAAGGCTAATTTACTTGATTGCTGTTAGGGAAACATGGTAACCAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCTAATTTACTTGATTGCTGTTAGGGAAACATGGTAACCAACTG  100

seq1  AGAGAAAGAGGACGTGAAAACCTTGGACTGCAGTCCACAATATCAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGGACGTGAAAACCTTGGACTGCAGTCCACAATATCAGAGAA  150

seq1  GGTATTTATAGCTGAAACGGTAAGGCAGATATATAACTCTATAGCTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTATAGCTGAAACGGTAAGGCAGATATATAACTCTATAGCTTCCA  200

seq1  GGTTAATGATTTTTTTTATTAGGTATTTTCTTTATTTACATTTCAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATGATTTTTTTTATTAGGTATTTTCTTTATTTACATTTCAAATGC  250

seq1  TCTCCCCTTTCCTAGTTTCCTCTCCTAAAATCCCCTATCCACTCCCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTTTCCTAGTTTCCTCTCCTAAAATCCCCTATCCACTCCCTCAT  300

seq1  CCCCTGCTCCCCAACCCACCTTCTCCTGCTTGCTGGCCCTGGCATTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTCCCCAACCCACCTTCTCCTGCTTGCTGGCCCTGGCATTCCAG  350

seq1  TATACTGGGACATAGAACCTTCACAAGACCAAGGGACTCTCCTCCTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGGACATAGAACCTTCACAAGACCAAGGGACTCTCCTCCTATTA  400

seq1  ATGACCAACTAGGCCATCCTCTGCTACATATGCAGCTAGAGACACAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAACTAGGCCATCCTCTGCTACATATGCAGCTAGAGACACAAGTC  450

seq1  ACACCATGTGTTTTCATTGATTGGACAGAGCACAGGATCCCCAATGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGTGTTTTCATTGATTGGACAGAGCACAGGATCCCCAATGAAGG  500

seq1  AGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGCTTGCAGCCCTATAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGCTTGCAGCCCTATAGGAG  550

seq1  GAACAACAATATGAACTAATCAGTACCCCCAGGTTAATGTTTTCATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAATATGAACTAATCAGTACCCCCAGGTTAATGTTTTCATAGAA  600

seq1  TACCCGTGTGTGAACAGATGTTTGTTTGACATTTTTGCCTTCACTTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGTGTGTGAACAGATGTTTGTTTGACATTTTTGCCTTCACTTGGGA  650

seq1  GTATTTTTCTTTTGTTTTGTCCAATTCTAATATGTTAGT  689
      |||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTCTTTTGTTTTGTCCAATTCTAATATGTTAGT  689


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