BAC Information

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BAC

Clone NameB6Ng01-316N03
Chromosome15 (Build37)
Map Location 12,934,917 - 12,975,248
singlet/doubletdoublet
Overlap geneCdh6
Upstream geneLOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen
Downstream geneLOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316N03.bB6Ng01-316N03.g
ACCGA107120GA107121
length1,1021,134
definitionB6Ng01-316N03.b B6Ng01-316N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,974,147 - 12,975,248)(12,934,917 - 12,936,054)
sequence
gaattccagtactctgaatgcaaaaactgagaatccctgcagtgagctgg
ctagccacagtagtggtctctgggttaactgagaagccctatctcagaac
aaagaggaaagcaactgaaaaaaaaaaaaaaaaaaaaaaactcaacatca
gcctctgatgatgtgtgaacacattcacacagagatctacacacacacac
cacaccacacacagacctaaacattatacccagaaagagagagacctaaa
tatcatacacacacacacctaaacatcatacacacacacatacacagacc
tacacatcacacacacacactcacacacacctacaaatcacatatacaca
catacctcacctacaccacacatgctcacacacatacacatacatacaca
cacacacacacaccacgaagccataagaaattagttactatataaacttg
atctaaattacatattaaaataaacttggtataattacacattaaaaaga
aattagtaaaatcatacaacttgcctagtaagtgactattcaagctgatt
gtaaagatataatttatcaaaatattttgcttaacgttgcagttacagat
gcttcaaagcactacaaatagaaagaattaatagatgagatattcttgga
gtggttttacgttgtgaaaagagcaagtcaagaaaagtcaaaattctact
ctgcgttttcaggtattctgtggatagacacacagatatggacaggatat
tcaacattgattctggaaatggttcgatttttacatcaaaacttctcgac
cgggaaaccctgctgtggcacaacatcacagtgatcgcaacggagattag
taagtccaaccccatcagtgctgccccactgacggaatgagtatatatat
atctttcaagtgaaagatataagtgaaataaaaatacgtacatggtagat
atgctttcccaaaagaataataagctagacagacagtcacaaaaaacact
gaaaaaaagtgactctcaaatattgtgtgagaagcaaagggactgtgtag
agcacacatcttccaaatgtaggcgtggtcaacacggttagaatattctt
tc
gaattcagttccttatgttgtggtgactcccaaacataaaattgtttttg
ttgctacttcataactgtaatttttgctactgttatgaattgtaatgtaa
gtatctgtgttttctgatggtcttgggtgacccctgtgaaagggtcattt
gaccttaggggtctccacccgcaagatgttgagaagcactgtcttagaaa
ctctgaaactcttccaggaaccagtgcctgtagtttctcttctccggtcc
ttgaatcctctgccttgggtttcaacccttcccttcctcatgctttctcc
tcctctgaccttactcctctcttgaactgttcagctgtatcttgtttgtt
tgtttgtttgtttgtttgttttgttttacgagacagggtttttctgcgta
gccctggctgtcctggaactcactctgtagaccaggctggccttgaactt
agagatccacctgcctctgcctcctcattgctggaattaaaggcgtgcct
accacgcctggccacctgtatcttgttaaggctgttgtcaccatcaccgt
ctctctcactcccgctgctgctgttgagcactgaccttgaagttctgcct
aatcttcagatgtccgatagcttgtcaccatgccacactggcggctcagc
ccctcactactcagctcaaccttttcctccccggcccactctggccatat
aagcaggctgtttaactcattggatggactggatggaaaccatcctttgg
acctctcctgggtgttagactacttgctcaatgaaagcctgctgtcaggt
ggagtgggttgagctggtaacatgaagaaagacgcagcaacgaaagtaag
cagtgacagaggtctgagaaccgcggcagcttcagagacagagtagacga
cagagtagcgattactacccaaagccacagaaggccgtggtggagctgca
cctacaggggggagctgctgaaggttgttagacaattccttatggcacgt
gtgggatctctcagtgactggagctgctttcagatgatctgtctgtttat
ttgaccgaacagttctttagctaggcatcccaggccaggtggcggtcaaa
gttgttagtggtgattcgaattgcctcacctccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12974147_12975248
seq2: B6Ng01-316N03.b_45_1146 (reverse)

seq1  GAAAGAATATCTAAACGGTGTTGGCCCACGCCTACATTTTGAAGATGTGT  50
      ||||||||||   ||| ||||| | |||||||||||||| ||||||||||
seq2  GAAAGAATATTCTAACCGTGTT-GACCACGCCTACATTTGGAAGATGTGT  49

seq1  GGCTCTACACAGTCCC-TTGCTTCCTCACACAATATTTGAGAGTTCACTT  99
       ||||||||||||||| |||||| ||||||||||||||||||| ||||||
seq2  -GCTCTACACAGTCCCTTTGCTT-CTCACACAATATTTGAGAG-TCACTT  96

seq1  TTTTTCAGGTGTTTTTGTGACTGTCTGTCTAGCTTA-TATTC-TTTGGGA  147
      ||||||||   ||||||||||||||||||||||||| ||||| |||||||
seq2  TTTTTCAGTGTTTTTTGTGACTGTCTGTCTAGCTTATTATTCTTTTGGGA  146

seq1  AAGCATATCTACCATGTACGTA-TTCTATTTCACTTATATCTTTCACTTG  196
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  AAGCATATCTACCATGTACGTATTTTTATTTCACTTATATCTTTCACTTG  196

seq1  AAAGATATATATATACTCATTCCGTCAGTGGGGCAGCACTGATGGGGTTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATATATATACTCATTCCGTCAGTGGGGCAGCACTGATGGGGTTG  246

seq1  GACTTACTAATCTCCGTTGCGATCACTGTGATGTTGTGCCACAGCAGGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACTAATCTCCGTTGCGATCACTGTGATGTTGTGCCACAGCAGGGT  296

seq1  TTCCCGGTCGAGAAGTTTTGATGTAAAAATCGAACCATTTCCAGAATCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGGTCGAGAAGTTTTGATGTAAAAATCGAACCATTTCCAGAATCAA  346

seq1  TGTTGAATATCCTGTCCATATCTGTGTGTCTATCCACAGAATACCTGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATATCCTGTCCATATCTGTGTGTCTATCCACAGAATACCTGAAA  396

seq1  ACGCAGAGTAGAATTTTGACTTTTCTTGACTTGCTCTTTTCACAACGTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGAGTAGAATTTTGACTTTTCTTGACTTGCTCTTTTCACAACGTAA  446

seq1  AACCACTCCAAGAATATCTCATCTATTAATTCTTTCTATTTGTAGTGCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTCCAAGAATATCTCATCTATTAATTCTTTCTATTTGTAGTGCTT  496

seq1  TGAAGCATCTGTAACTGCAACGTTAAGCAAAATATTTTGATAAATTATAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCATCTGTAACTGCAACGTTAAGCAAAATATTTTGATAAATTATAT  546

seq1  CTTTACAATCAGCTTGAATAGTCACTTACTAGGCAAGTTGTATGATTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAATCAGCTTGAATAGTCACTTACTAGGCAAGTTGTATGATTTTA  596

seq1  CTAATTTCTTTTTAATGTGTAATTATACCAAGTTTATTTTAATATGTAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCTTTTTAATGTGTAATTATACCAAGTTTATTTTAATATGTAAT  646

seq1  TTAGATCAAGTTTATATAGTAACTAATTTCTTATGGCTTCGTGGTGTGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCAAGTTTATATAGTAACTAATTTCTTATGGCTTCGTGGTGTGTG  696

seq1  TGTGTGTGTGTATGTATGTGTATGTGTGTGAGCATGTGTGGTGTAGGTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTATGTATGTGTATGTGTGTGAGCATGTGTGGTGTAGGTGA  746

seq1  GGTATGTGTGTATATGTGATTTGTAGGTGTGTGTGAGTGTGTGTGTGTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGTGTATATGTGATTTGTAGGTGTGTGTGAGTGTGTGTGTGTGA  796

seq1  TGTGTAGGTCTGTGTATGTGTGTGTGTATGATGTTTAGGTGTGTGTGTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGTCTGTGTATGTGTGTGTGTATGATGTTTAGGTGTGTGTGTGT  846

seq1  ATGATATTTAGGTCTCTCTCTTTCTGGGTATAATGTTTAGGTCTGTGTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTAGGTCTCTCTCTTTCTGGGTATAATGTTTAGGTCTGTGTGT  896

seq1  GGTGTGGTGTGTGTGTGTAGATCTCTGTGTGAATGTGTTCACACATCATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTGTGTGTGTGTAGATCTCTGTGTGAATGTGTTCACACATCATC  946

seq1  AGAGGCTGATGTTGAGTTTTTTTTTTTTTTTTTTTTTTTCAGTTGCTTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGATGTTGAGTTTTTTTTTTTTTTTTTTTTTTTCAGTTGCTTTC  996

seq1  CTCTTTGTTCTGAGATAGGGCTTCTCAGTTAACCCAGAGACCACTACTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTTCTGAGATAGGGCTTCTCAGTTAACCCAGAGACCACTACTGT  1046

seq1  GGCTAGCCAGCTCACTGCAGGGATTCTCAGTTTTTGCATTCAGAGTACTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCAGCTCACTGCAGGGATTCTCAGTTTTTGCATTCAGAGTACTG  1096

seq1  GAATTC  1102
      ||||||
seq2  GAATTC  1102

seq1: chr15_12934917_12936054
seq2: B6Ng01-316N03.g_64_1197

seq1  GAATTCAGTTCCTTATGTTGTGGTGACTCCCAAACATAAAATTGTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTTATGTTGTGGTGACTCCCAAACATAAAATTGTTTTTG  50

seq1  TTGCTACTTCATAACTGTAATTTTTGCTACTGTTATGAATTGTAATGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTTCATAACTGTAATTTTTGCTACTGTTATGAATTGTAATGTAA  100

seq1  GTATCTGTGTTTTCTGATGGTCTTGGGTGACCCCTGTGAAAGGGTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTGTTTTCTGATGGTCTTGGGTGACCCCTGTGAAAGGGTCATTT  150

seq1  GACCTTAGGGGTCTCCACCCGCAAGATGTTGAGAAGCACTGTCTTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAGGGGTCTCCACCCGCAAGATGTTGAGAAGCACTGTCTTAGAAA  200

seq1  CTCTGAAACTCTTCCAGGAACCAGTGCCTGTAGTTTCTCTTCTCCGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAACTCTTCCAGGAACCAGTGCCTGTAGTTTCTCTTCTCCGGTCC  250

seq1  TTGAATCCTCTGCCTTGGGTTTCAACCCTTCCCTTCCTCATGCTTTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCCTCTGCCTTGGGTTTCAACCCTTCCCTTCCTCATGCTTTCTCC  300

seq1  TCCTCTGACCTTACTCCTCTCTTGAACTGTTCAGCTGTATCTTGTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGACCTTACTCCTCTCTTGAACTGTTCAGCTGTATCTTGTTTGTT  350

seq1  TGTTTGTTTGTTTGTTTGTTTTGTTTTACGAGACAGGGTTTTTCTGCGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTTGTTTTACGAGACAGGGTTTTTCTGCGTA  400

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTT  450

seq1  AGAGATCCACCTGCCTCTGCCTCCTCATTGCTGGAATTAAAGGCGTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCACCTGCCTCTGCCTCCTCATTGCTGGAATTAAAGGCGTGCCT  500

seq1  ACCACGCCTGGCCACCTGTATCTTGTTAAGGCTGTTGTCACCATCACCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCCTGGCCACCTGTATCTTGTTAAGGCTGTTGTCACCATCACCGT  550

seq1  CTCTCTCACTCCCGCTGCTGCTGTTGAGCACTGACCTTGAAGTTCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCACTCCCGCTGCTGCTGTTGAGCACTGACCTTGAAGTTCTGCCT  600

seq1  AATCTTCAGATGTCCGATAGCTTGTCACCATGCCACACTGGCGGCTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAGATGTCCGATAGCTTGTCACCATGCCACACTGGCGGCTCAGC  650

seq1  CCCTCACTACTCAGCTCAACCTTTTCCTCCCCGGCCCACTCTGGCCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTACTCAGCTCAACCTTTTCCTCCCCGGCCCACTCTGGCCATAT  700

seq1  AAGCAGGCTGTTTAACTCATTGGATGGACTGGATGGAAACCATCCTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCTGTTTAACTCATTGGATGGACTGGATGGAAACCATCCTTTGG  750

seq1  ACCTCTCCTGGGTGTTAGACTACTTGCTCAATGAAAGCCTGCTGTCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCTGGGTGTTAGACTACTTGCTCAATGAAAGCCTGCTGTCAGGT  800

seq1  GGAGTGGGTTGAGCTGGTAACATGAAGAAAGACGCAGCAACGAAGGTAAG  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGAGTGGGTTGAGCTGGTAACATGAAGAAAGACGCAGCAACGAAAGTAAG  850

seq1  CAGTGACAGAGGTCTGAGAACCGCGGCAGCTTCAGAGACAGAGTAGACGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACAGAGGTCTGAGAACCGCGGCAGCTTCAGAGACAGAGTAGACGA  900

seq1  CAGAGTAGCGATTACTACCCAAAGCCACAGAA-GCCGTGGTGGAGCTGCA  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGAGTAGCGATTACTACCCAAAGCCACAGAAGGCCGTGGTGGAGCTGCA  950

seq1  CCTACA-GGGGGAGCTGCTG-AGGTTGTTAGACAATTTCCTTATGGCACG  997
      |||||| ||||||||||||| |||||||||||||| ||||||||||||||
seq2  CCTACAGGGGGGAGCTGCTGAAGGTTGTTAGACAA-TTCCTTATGGCACG  999

seq1  TGTGGGATCTCTTAAGTGACTGAAGCTGCTTTCAGGATGATCTGTCTGTT  1047
      ||||||||||| | |||||||| ||||||||||| |||||||||||||||
seq2  TGTGGGATCTC-TCAGTGACTGGAGCTGCTTTCA-GATGATCTGTCTGTT  1047

seq1  TATTTGACCG-ACAGTTCTTTAGCTTAAGCAT-CCAGGGCAGGTGGGCGT  1095
      |||||||||| ||||||||||||| || |||| ||||| ||||| |||| 
seq2  TATTTGACCGAACAGTTCTTTAGC-TAGGCATCCCAGGCCAGGT-GGCG-  1094

seq1  GTCCAAAAGTTGTTAGTGGTGGAATCGAATTGCCCCACCTCCG  1138
      |||  ||||||||||||||| || |||||||||| ||||||||
seq2  GTC--AAAGTTGTTAGTGGT-GATTCGAATTGCCTCACCTCCG  1134