BAC Information

Click to search

BAC

Clone NameB6Ng01-317B17
Chromosome15 (Build37)
Map Location 69,676,470 - 69,775,014
singlet/doubletdoublet
Overlap genenone
Upstream geneEG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317B17.bB6Ng01-317B17.g
ACCGA107334GA107335
length1,1141,150
definitionB6Ng01-317B17.b B6Ng01-317B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,676,470 - 69,677,590)(69,773,853 - 69,775,014)
sequence
gaattcttcagagtaggtttaatagtacttgacttaatagaatcttatta
ctgtatataaaacttttcttgctcagccatgacctgtctttctacagttc
tatatactactatatttgtacaacaccctcaaatcataccatatagttgg
ttctttgtattaatcatatttcactcaacttcagagttatgaaatgtact
atcacatagccttgccaatagtttctctgaccacttctcagtttgtggag
gactttttaatttatatctcactatttgcacctaggttccatcttgcgtg
cgctcaactggccaggaagaacgacgctacaacaggatccttctgcacac
gtttattcagtcctgtttcttcttgtttctatctccattgtttctatctc
ccttgtttctatctcccccaaaccctgggcctctcactcttttatactct
cagttcccatccacgcacagcaggccacgccacctcaccaggtacgcagc
ttcagctaatcagggcagcaggggcatatctccatcaaaatggattcacc
ggtatcctggtacacctgtgcagctctcaagatgtttgtggcttatatga
ggaagtcaggtgtaagtcatacgacttagctgcagtccctggcgcctttg
ggactgccgccacacccgctccccacagttccattgtggatttttccatt
agatgattattattgactgatattctgggaacctctttatacacattgca
gctctacatttgctattcaacgctttctagatttctgtccagcctcctag
aatttatactgacatttcccaaatgtttttgtgtctttgtaaaccaatcc
aaggttggaccattctaaccctaccttcaacctccaaatgggattcagtc
atcattcattttgaggtaccaagctgtacactgcttttgaatggtagttt
gctgcaaaatcactgagagtcacttctttttcttttcactaacatgggag
agaaatcagacattaccaccagtagcaaacactcactaggtatcacagca
taaaagcatgtgctgacttttgcattagctaggactatactatgatgtgg
cgtctttggagatt
gaattccaagacagccagggctaaacagagaaaccctgtctcgaaaaaaa
aaaaaaaaaaaagaaagaaaaaagaaaaaaaaaagaaaaaaaaagaaaag
aaaattttcttagatgtaaaaggctattatcttgtcaaactttaacaaaa
agctaaattcaggatttgccaatatttctatcatcattgtttttgaatcc
ttttttgttccaaaagttaatataagttaatggtcaatttgtgggacaaa
ttcagaaagtaaagagcatatggctggtgaattttgcctccttgttctga
tctctgagatcgtgtctccatctcattgagatctaacatctagacaggtg
cagagcactcaaacatgatacctggaattccctggaattctcccaacact
tcatgctagtgtgtatctctgacaagacctcatatcttagggatttgctg
acagatgaatataccattatcacatttctgctcatcatgttccttagctg
tagaactttatgcctctgacctattctggcagaaatgctttacttacaca
gtaaaatgtaggaatccttttacctttctaatgctctggttgttccacag
caatcttgagtttttcacttccatcccttactttcttgtcctcttgttca
ctgataagatgtgaagtgcatgtatgtatctttcttttttttccaaatta
agaaaattcactaaggaacatatcaacagaaatggattcccataactgct
atagcattacctattatcttttttaatgaaatgtatcctaagtaactaac
cagagtacttaatctccagtgatgctgatgcccctacaccttgttccata
tttttttcctgaaaatatgagcaagatgctattaatttttttctacaaca
tcaataatctcctagatttaatgctctgatatcatgccctagcaactttg
gacatcctctgcttacctttgtaagtctctttctgaccctcatatttttt
ctgggtagggtaccctggaatcatgtagctagggagtcagcatcttctag
atcatgtagctcagatgttctctccatgtcacatactcagcgatctcatg
ctcactctaacatttacattcctgattgggttgagggtgagtatataggc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_69676470_69677590
seq2: B6Ng01-317B17.b_48_1161

seq1  GAATTCTTCAGAGTAGGTTTAATAGTACTTGACTTAATAGAATCTTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAGTAGGTTTAATAGTACTTGACTTAATAGAATCTTATTA  50

seq1  CTGTATATAAAACTTTTCTTGCTCAGCCATGACCTGTCTTTCTACAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATAAAACTTTTCTTGCTCAGCCATGACCTGTCTTTCTACAGTTC  100

seq1  TATATACTACTATATTTGTACAACACCCTCAAATCATACCATATAGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTACTATATTTGTACAACACCCTCAAATCATACCATATAGTTGG  150

seq1  TTCTTTGTATTAATCATATTTCACTCAACTTCAGAGTTATGAAATGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTATTAATCATATTTCACTCAACTTCAGAGTTATGAAATGTACT  200

seq1  ATCACATAGCCTTGCCAATAGTTTCTCTGACCACTTCTCAGTTTGTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATAGCCTTGCCAATAGTTTCTCTGACCACTTCTCAGTTTGTGGAG  250

seq1  GACTTTTTAATTTATATCTCACTATTTGCACCTAGGTTCCATCTTGCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTAATTTATATCTCACTATTTGCACCTAGGTTCCATCTTGCGTG  300

seq1  CGCTCAACTGGCCAGGAAGAACGACGCTACAACAGGATCCTTCTGCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAACTGGCCAGGAAGAACGACGCTACAACAGGATCCTTCTGCACAC  350

seq1  GTTTATTCAGTCCTGTTTCTTCTTGTTTCTATCTCCATTGTTTCTATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCAGTCCTGTTTCTTCTTGTTTCTATCTCCATTGTTTCTATCTC  400

seq1  CCTTGTTTCTATCTCCCCCAAACCCTGGGCCTCTCACTCTTTTATACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTCTATCTCCCCCAAACCCTGGGCCTCTCACTCTTTTATACTCT  450

seq1  CAGTTCCCATCCACGCACAGCAGGCCACGCCACCTCACCAGGTACGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCATCCACGCACAGCAGGCCACGCCACCTCACCAGGTACGCAGC  500

seq1  TTCAGCTAATCAGGGCAGCAGGGGCATATCTCCATCAAAATGGATTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTAATCAGGGCAGCAGGGGCATATCTCCATCAAAATGGATTCACC  550

seq1  GGTATCCTGGTACACCTGTGCAGCTCTCAAGATGTTTGTGGCTTATATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCTGGTACACCTGTGCAGCTCTCAAGATGTTTGTGGCTTATATGA  600

seq1  GGAAGTCAGGTGTAAGTCATACGACTTAGCTGCAGTCCCTGGCGCCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCAGGTGTAAGTCATACGACTTAGCTGCAGTCCCTGGCGCCTTTG  650

seq1  GGACTGCCGCCACACCCGCTCCCCACAGTTCCATTGTGGATTTTTCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCCGCCACACCCGCTCCCCACAGTTCCATTGTGGATTTTTCCATT  700

seq1  AGATGATTATTATTGACTGATATTCTGGGAACCTCTTTATACACATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTATTATTGACTGATATTCTGGGAACCTCTTTATACACATTGCA  750

seq1  GCTCTACATTTGCTATTCAACGCTTTCTAGATTTCTGTCCAGCCTCCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACATTTGCTATTCAACGCTTTCTAGATTTCTGTCCAGCCTCCTAG  800

seq1  AATTTATACTGACATTTCCCAAATGTTTTTGTGTCTTTGTAAACCAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATACTGACATTTCCCAAATGTTTTTGTGTCTTTGTAAACCAATCC  850

seq1  AAGGTTGGACCATTCTAACCCTACCTTCAACCTCCAAATGGGATTCAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGGACCATTCTAACCCTACCTTCAACCTCCAAATGGGATTCAGTC  900

seq1  ATCATTCATTTTGAGGTACCAAGCTGTACACTGCTTTTGAATGGTAGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCATTTTGAGGTACCAAGCTGTACACTGCTTTTGAATGGTAGTTT  950

seq1  GCTGCAAAATCACTGAGAGTCACTTCTTTTTCTTTTTCACTAACATGGGA  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTGCAAAATCACTGAGAGTCACTTCTTTTTC-TTTTCACTAACATGGGA  999

seq1  GAGAAAATCAGACATTACCACCAGTAAGCAAACACTCCACTAGGTATCAC  1050
      ||| ||||||||||||||||||||| |||||||||| |||||||||||||
seq2  GAG-AAATCAGACATTACCACCAGT-AGCAAACACT-CACTAGGTATCAC  1046

seq1  AAGCATAAAAGCATGTGCTGACTTTTGCATTTAGCTTAAGACTATACTAT  1100
       |||||||||||||||||||||||||||| ||||| || |||||||||||
seq2  -AGCATAAAAGCATGTGCTGACTTTTGCA-TTAGC-TAGGACTATACTAT  1093

seq1  GATGTGGCGTCTTTGAAGATT  1121
      ||||||||||||||| |||||
seq2  GATGTGGCGTCTTTGGAGATT  1114

seq1: chr15_69773853_69775014
seq2: B6Ng01-317B17.g_67_1216 (reverse)

seq1  GCCTATATACTCA-CCTCAACACAATCAAGAAATGTAAAATGGTAAGGAA  49
      ||||||||||||| ||||||| ||||| || ||||| ||||| ||  || 
seq2  GCCTATATACTCACCCTCAACCCAATC-AGGAATGT-AAATGTTA--GA-  45

seq1  GGTGAAGCATGAAGGATCTGCTGAGGTATGTGACCATGGAGAGAACATCT  99
       ||| |||||||  |||| ||||| |||||||| ||||||||||||||||
seq2  -GTG-AGCATGA--GATC-GCTGA-GTATGTGA-CATGGAGAGAACATCT  88

seq1  GAGCTACATGATTCTAGAAGATGCTGACTCCCTAGGCTACATGATTCCAG  149
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  GAGCTACATGA-TCTAGAAGATGCTGACTCCCTA-GCTACATGATTCCAG  136

seq1  GGTACCCTACCCAG-AAAAATATGAGGGTCAGAAAGAGACTTACAAAGGT  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTACCCTACCCAGAAAAAATATGAGGGTCAGAAAGAGACTTACAAAGGT  186

seq1  AAGCAGAGGATGTCCAAAGTTGCTAGGGCATGATATCAGAGCATTAAATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGGATGTCCAAAGTTGCTAGGGCATGATATCAGAGCATTAAATC  236

seq1  TAGGAGATTATTGATGTTGTAGAAAAAAATTAATAGCATCTTGCTCATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATTATTGATGTTGTAGAAAAAAATTAATAGCATCTTGCTCATAT  286

seq1  TTTCAGGAAAAAAATATGGAACAAGGTGTAGGGGCATCAGCATCACTGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAAAAAAATATGGAACAAGGTGTAGGGGCATCAGCATCACTGGA  336

seq1  GATTAAGTACTCTGGTTAGTTACTTAGGATACATTTCATTAAAAAAGATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTACTCTGGTTAGTTACTTAGGATACATTTCATTAAAAAAGATA  386

seq1  ATAGGTAATGCTATAGCAGTTATGGGAATCCATTTCTGTTGATATGTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAATGCTATAGCAGTTATGGGAATCCATTTCTGTTGATATGTTCC  436

seq1  TTAGTGAATTTTCTTAATTTGGAAAAAAAAGAAAGATACATACATGCACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAATTTTCTTAATTTGGAAAAAAAAGAAAGATACATACATGCACT  486

seq1  TCACATCTTATCAGTGAACAAGAGGACAAGAAAGTAAGGGATGGAAGTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTTATCAGTGAACAAGAGGACAAGAAAGTAAGGGATGGAAGTGA  536

seq1  AAAACTCAAGATTGCTGTGGAACAACCAGAGCATTAGAAAGGTAAAAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAAGATTGCTGTGGAACAACCAGAGCATTAGAAAGGTAAAAGGA  586

seq1  TTCCTACATTTTACTGTGTAAGTAAAGCATTTCTGCCAGAATAGGTCAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACATTTTACTGTGTAAGTAAAGCATTTCTGCCAGAATAGGTCAGA  636

seq1  GGCATAAAGTTCTACAGCTAAGGAACATGATGAGCAGAAATGTGATAATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAAGTTCTACAGCTAAGGAACATGATGAGCAGAAATGTGATAATG  686

seq1  GTATATTCATCTGTCAGCAAATCCCTAAGATATGAGGTCTTGTCAGAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTCATCTGTCAGCAAATCCCTAAGATATGAGGTCTTGTCAGAGAT  736

seq1  ACACACTAGCATGAAGTGTTGGGAGAATTCCAGGGAATTCCAGGTATCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAGCATGAAGTGTTGGGAGAATTCCAGGGAATTCCAGGTATCAT  786

seq1  GTTTGAGTGCTCTGCACCTGTCTAGATGTTAGATCTCAATGAGATGGAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTGCTCTGCACCTGTCTAGATGTTAGATCTCAATGAGATGGAGA  836

seq1  CACGATCTCAGAGATCAGAACAAGGAGGCAAAATTCACCAGCCATATGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATCTCAGAGATCAGAACAAGGAGGCAAAATTCACCAGCCATATGCT  886

seq1  CTTTACTTTCTGAATTTGTCCCACAAATTGACCATTAACTTATATTAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTTCTGAATTTGTCCCACAAATTGACCATTAACTTATATTAACT  936

seq1  TTTGGAACAAAAAAGGATTCAAAAACAATGATGATAGAAATATTGGCAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACAAAAAAGGATTCAAAAACAATGATGATAGAAATATTGGCAAA  986

seq1  TCCTGAATTTAGCTTTTTGTTAAAGTTTGACAAGATAATAGCCTTTTACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATTTAGCTTTTTGTTAAAGTTTGACAAGATAATAGCCTTTTACA  1036

seq1  TCTAAGAAAATTTTCTTTTCTTTTTTTTTCTTTTTTTTTTCTTTTTTCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAAAATTTTCTTTTCTTTTTTTTTCTTTTTTTTTTCTTTTTTCTT  1086

seq1  TCTTTTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTTTAGCCCTGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTTTAGCCCTGG  1136

seq1  CTGTCTTGGAATTC  1162
      ||||||||||||||
seq2  CTGTCTTGGAATTC  1150